Wall clock time and date at job start Sun Mar 29 2020 21:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 N 1.46499 * 109.47427 * 120.00289 * 2 1 3 5 5 C 1.35044 * 126.39513 * 299.97334 * 4 2 1 6 6 N 1.30494 * 108.70229 * 180.02562 * 5 4 2 7 7 C 1.34126 * 109.25549 * 0.02562 * 6 5 4 8 8 C 1.34666 * 108.02240 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.59485 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.47361 * 94.95736 * 9 8 7 11 11 C 1.46899 * 111.00366 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47005 * 34.99894 * 11 10 9 13 13 C 1.53000 * 109.47136 * 275.00228 * 11 10 9 14 14 C 1.50694 * 109.47188 * 154.99972 * 11 10 9 15 15 H 1.08000 * 120.00457 * 0.02562 * 14 11 10 16 16 C 1.37883 * 119.99991 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99871 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99982 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46949 * 60.00006 * 18 16 14 20 20 H 1.48497 * 109.47214 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47136 * 299.99925 * 18 16 14 22 22 H 1.08998 * 109.47556 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47277 * 300.00068 * 1 2 3 24 24 H 1.08998 * 109.47613 * 59.99768 * 1 2 3 25 25 H 1.09004 * 109.47031 * 240.00394 * 2 1 3 26 26 H 1.09000 * 109.47494 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47193 * 299.99970 * 3 2 1 28 28 H 1.08997 * 109.47064 * 59.99605 * 3 2 1 29 29 H 1.08006 * 125.64918 * 359.75453 * 5 4 2 30 30 H 1.07999 * 125.99346 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.47333 * 214.95855 * 9 8 7 32 32 H 1.09003 * 109.46998 * 334.95820 * 9 8 7 33 33 H 1.00899 * 110.99452 * 303.95982 * 10 9 8 34 34 H 1.08999 * 109.46934 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.46902 * 299.99730 * 13 11 10 36 36 H 1.09004 * 109.47315 * 59.99600 * 13 11 10 37 37 H 0.96997 * 119.99661 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7735 -0.3435 2.4780 6 7 2.3752 -1.1937 3.2640 7 6 3.0197 -2.1046 2.5197 8 6 2.8098 -1.8071 1.2232 9 6 3.3421 -2.5600 0.0312 10 7 2.3335 -3.5236 -0.4297 11 6 2.8190 -4.2780 -1.5929 12 1 3.8911 -4.4478 -1.4942 13 6 2.5444 -3.4800 -2.8691 14 6 2.1051 -5.6032 -1.6657 15 1 1.3646 -5.8592 -0.9225 16 6 2.3975 -6.4888 -2.6813 17 7 3.2997 -6.1773 -3.5861 18 14 1.5131 -8.1318 -2.7712 19 1 0.0524 -7.9009 -2.9059 20 1 2.0037 -8.8943 -3.9471 21 1 1.7798 -8.9059 -1.5322 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.1816 0.5009 2.7994 30 1 3.6051 -2.9312 2.8944 31 1 3.5669 -1.8576 -0.7715 32 1 4.2506 -3.0920 0.3136 33 1 2.0606 -4.1458 0.3163 34 1 2.9050 -4.0396 -3.7322 35 1 1.4722 -3.3102 -2.9678 36 1 3.0607 -2.5214 -2.8164 37 1 3.5050 -6.8002 -4.3007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474250627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:43 Heat of formation + Delta-G solvation = 50.350757 kcal Electronic energy + Delta-G solvation = -17091.430381 eV Core-core repulsion = 14483.422636 eV Total energy + Delta-G solvation = -2608.007745 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.86129 -36.01956 -35.86543 -32.84910 -30.83350 -29.93653 -27.70274 -27.40450 -25.38420 -24.03131 -22.84518 -20.75714 -19.85940 -19.14385 -16.99903 -16.24932 -15.27591 -15.06451 -14.73801 -14.24893 -13.89002 -13.54884 -13.40580 -13.13530 -12.94518 -12.43954 -12.38806 -12.19666 -11.76426 -11.48418 -11.30618 -11.09371 -10.88476 -10.81315 -10.38892 -10.20892 -10.09589 -9.60320 -9.30400 -8.90981 -8.51905 -8.05173 -7.35813 -6.06616 -4.13150 2.34133 3.00292 3.29526 3.33830 3.36889 3.45855 4.37808 4.57393 4.85226 4.88675 4.92880 5.11306 5.24617 5.34951 5.37197 5.49718 5.60548 5.65493 5.75825 5.83616 5.84868 6.10825 6.12492 6.17392 6.72067 6.80321 7.03696 7.05692 7.13809 7.40960 7.50641 7.73763 7.82322 8.20323 8.30513 8.36944 8.59172 8.96439 9.53060 10.99689 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.005838 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.246404 B = 4795.203449 C = 5121.232259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 C -0.161 4.161 4 N -0.439 5.439 5 C 0.168 3.832 6 N -0.498 5.498 7 C -0.038 4.038 8 C 0.003 3.997 9 C 0.129 3.871 10 N -0.684 5.684 11 C 0.212 3.788 12 H 0.003 0.997 13 C -0.124 4.124 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.195 0.805 30 H 0.164 0.836 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.335 0.665 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 12.994 5.392 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 C -0.219 4.219 4 N -0.122 5.122 5 C -0.114 4.114 6 N -0.216 5.216 7 C -0.186 4.186 8 C -0.112 4.112 9 C -0.001 4.001 10 N -0.316 5.316 11 C 0.104 3.896 12 H 0.020 0.980 13 C -0.182 4.182 14 C -0.557 4.557 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.212 0.788 30 H 0.181 0.819 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.810 13.472 5.551 14.839 hybrid contribution 0.154 -1.467 -0.598 1.592 sum -2.656 12.005 4.953 13.255 Atomic orbital electron populations 1.22109 0.93238 1.03775 1.02456 1.21438 0.95587 0.93195 0.87420 1.22179 1.02023 0.94739 1.02960 1.45472 1.37429 1.21956 1.07374 1.24581 1.04906 1.02418 0.79469 1.70214 1.12514 1.05237 1.33651 1.22007 1.05914 1.01590 0.89091 1.21471 1.00297 0.91665 0.97811 1.20304 0.93716 0.94718 0.91389 1.60811 1.38888 1.21456 1.10486 1.19119 0.93878 0.90692 0.85873 0.97975 1.21722 0.98755 0.96159 1.01557 1.21203 1.22705 1.00184 1.11648 0.92245 1.24912 0.95101 0.98453 0.95462 1.69881 1.32280 1.36189 1.14570 0.86571 0.79990 0.83451 0.77461 1.20227 1.21282 1.20256 0.90982 0.92313 0.90792 0.87400 0.91934 0.90598 0.91975 0.78845 0.81885 0.91350 0.93666 0.84713 0.89997 0.95017 0.97952 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.24 37.15 0.34 -1.33 16 2 C 0.13 1.50 3.56 -67.93 -0.24 1.26 16 3 C -0.16 -1.46 9.24 37.16 0.34 -1.12 16 4 N -0.44 -6.28 2.62 -106.92 -0.28 -6.56 16 5 C 0.17 2.37 11.55 -90.38 -1.04 1.33 16 6 N -0.50 -8.39 11.25 -14.67 -0.16 -8.55 16 7 C -0.04 -0.63 11.79 -17.81 -0.21 -0.84 16 8 C 0.00 0.06 6.46 -81.60 -0.53 -0.47 16 9 C 0.13 2.30 5.51 -4.98 -0.03 2.27 16 10 N -0.68 -14.22 6.29 -109.22 -0.69 -14.91 16 11 C 0.21 5.20 2.60 -68.87 -0.18 5.02 16 12 H 0.00 0.07 7.80 -51.93 -0.40 -0.33 16 13 C -0.12 -2.96 9.19 37.16 0.34 -2.61 16 14 C -0.52 -14.01 8.59 -34.44 -0.30 -14.31 16 15 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.11 1.47 6.95 -51.93 -0.36 1.11 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 29 H 0.19 2.01 8.06 -52.48 -0.42 1.58 16 30 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 31 H 0.07 1.20 6.73 -51.93 -0.35 0.85 16 32 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 33 H 0.34 7.11 8.21 -39.29 -0.32 6.78 16 34 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.00 0.03 7.45 -51.93 -0.39 -0.36 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -29.50 305.32 -8.39 -37.90 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.88 Total: 5.05 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.59 Total: -9.19 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.50 Total: -54.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.50 -8.39 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474250627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.248 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds