Wall clock time and date at job start Sun Mar 29 2020 21:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 N 1.46499 * 109.47427 * 120.00289 * 2 1 3 5 5 C 1.35044 * 126.39513 * 299.97334 * 4 2 1 6 6 N 1.30494 * 108.70229 * 180.02562 * 5 4 2 7 7 C 1.34126 * 109.25549 * 0.02562 * 6 5 4 8 8 C 1.34666 * 108.02240 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.59485 * 180.02562 * 8 7 6 10 10 N 1.46902 * 109.47361 * 94.95736 * 9 8 7 11 11 C 1.46899 * 111.00366 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47005 * 34.99894 * 11 10 9 13 13 C 1.53000 * 109.47136 * 275.00228 * 11 10 9 14 14 C 1.50694 * 109.47188 * 154.99972 * 11 10 9 15 15 H 1.08000 * 120.00457 * 0.02562 * 14 11 10 16 16 C 1.37883 * 119.99991 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99871 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99982 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46949 * 60.00006 * 18 16 14 20 20 H 1.48497 * 109.47214 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47136 * 299.99925 * 18 16 14 22 22 H 1.08998 * 109.47556 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47277 * 300.00068 * 1 2 3 24 24 H 1.08998 * 109.47613 * 59.99768 * 1 2 3 25 25 H 1.09004 * 109.47031 * 240.00394 * 2 1 3 26 26 H 1.09000 * 109.47494 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47193 * 299.99970 * 3 2 1 28 28 H 1.08997 * 109.47064 * 59.99605 * 3 2 1 29 29 H 1.08006 * 125.64918 * 359.75453 * 5 4 2 30 30 H 1.07999 * 125.99346 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.47333 * 214.95855 * 9 8 7 32 32 H 1.09003 * 109.46998 * 334.95820 * 9 8 7 33 33 H 1.00899 * 110.99452 * 303.95982 * 10 9 8 34 34 H 1.08999 * 109.46934 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.46902 * 299.99730 * 13 11 10 36 36 H 1.09004 * 109.47315 * 59.99600 * 13 11 10 37 37 H 0.96997 * 119.99661 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7735 -0.3435 2.4780 6 7 2.3752 -1.1937 3.2640 7 6 3.0197 -2.1046 2.5197 8 6 2.8098 -1.8071 1.2232 9 6 3.3421 -2.5600 0.0312 10 7 2.3335 -3.5236 -0.4297 11 6 2.8190 -4.2780 -1.5929 12 1 3.8911 -4.4478 -1.4942 13 6 2.5444 -3.4800 -2.8691 14 6 2.1051 -5.6032 -1.6657 15 1 1.3646 -5.8592 -0.9225 16 6 2.3975 -6.4888 -2.6813 17 7 3.2997 -6.1773 -3.5861 18 14 1.5131 -8.1318 -2.7712 19 1 0.0524 -7.9009 -2.9059 20 1 2.0037 -8.8943 -3.9471 21 1 1.7798 -8.9059 -1.5322 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.1816 0.5009 2.7994 30 1 3.6051 -2.9312 2.8944 31 1 3.5669 -1.8576 -0.7715 32 1 4.2506 -3.0920 0.3136 33 1 2.0606 -4.1458 0.3163 34 1 2.9050 -4.0396 -3.7322 35 1 1.4722 -3.3102 -2.9678 36 1 3.0607 -2.5214 -2.8164 37 1 3.5050 -6.8002 -4.3007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474250627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:43 Heat of formation + Delta-G solvation = 32.845017 kcal Electronic energy + Delta-G solvation = -17092.189487 eV Core-core repulsion = 14483.422636 eV Total energy + Delta-G solvation = -2608.766851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.04191 -37.79528 -36.85676 -34.74502 -32.26933 -31.26803 -29.31055 -28.16889 -27.38397 -25.60865 -23.87789 -21.96286 -21.76384 -20.33988 -18.62044 -17.70895 -16.92932 -16.32335 -16.19650 -15.56178 -15.28572 -15.17762 -14.71492 -14.40437 -14.06207 -13.90379 -13.65307 -13.19467 -13.10419 -12.93149 -12.73617 -12.68860 -12.35543 -12.29960 -12.21596 -12.08614 -11.86732 -10.94223 -10.86822 -10.58479 -10.43866 -9.36524 -9.07926 -8.14493 -6.28373 1.13136 1.42638 1.43560 1.51452 1.92917 2.22689 2.41295 3.14385 3.60936 3.70992 3.80893 3.89468 4.02287 4.18269 4.30057 4.46063 4.63162 4.66769 4.68553 4.80019 4.83651 4.87893 4.99919 5.04993 5.14448 5.18822 5.27929 5.44045 5.54197 5.64957 5.80951 5.83858 6.20925 6.38112 6.44581 6.70476 6.94011 7.16366 7.41904 8.90758 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032278 B = 0.005838 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.246404 B = 4795.203449 C = 5121.232259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.121 3.879 3 C -0.153 4.153 4 N -0.437 5.437 5 C 0.184 3.816 6 N -0.530 5.530 7 C -0.048 4.048 8 C -0.014 4.014 9 C 0.139 3.861 10 N -0.678 5.678 11 C 0.217 3.783 12 H -0.027 1.027 13 C -0.110 4.110 14 C -0.539 4.539 15 H 0.056 0.944 16 C 0.016 3.984 17 N -0.916 5.916 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.235 0.765 30 H 0.167 0.833 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.332 0.668 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 14.326 5.849 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.019 3.981 3 C -0.211 4.211 4 N -0.120 5.120 5 C -0.098 4.098 6 N -0.248 5.248 7 C -0.196 4.196 8 C -0.131 4.131 9 C 0.009 3.991 10 N -0.309 5.309 11 C 0.108 3.892 12 H -0.009 1.009 13 C -0.169 4.169 14 C -0.577 4.577 15 H 0.074 0.926 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.112 0.888 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.251 0.749 30 H 0.184 0.816 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.993 14.822 6.004 16.483 hybrid contribution 0.519 -1.803 -0.709 2.005 sum -3.474 13.019 5.295 14.478 Atomic orbital electron populations 1.22084 0.92026 1.02398 1.04489 1.21646 0.96484 0.94391 0.85567 1.22142 1.01337 0.92747 1.04837 1.45663 1.36667 1.21263 1.08397 1.25344 1.03368 1.02233 0.78899 1.70221 1.13868 1.06209 1.34542 1.22186 1.06083 1.01944 0.89378 1.21172 1.01953 0.92984 0.96941 1.20158 0.92872 0.94009 0.92107 1.60730 1.39647 1.20924 1.09573 1.18927 0.91910 0.90712 0.87613 1.00925 1.21519 0.98530 0.96676 1.00156 1.21522 1.22902 1.01527 1.11750 0.92582 1.25681 0.95772 1.01762 0.95120 1.70002 1.33277 1.37266 1.14966 0.85580 0.78888 0.79392 0.77568 1.19763 1.20800 1.19755 0.93964 0.90308 0.88785 0.89668 0.92959 0.88578 0.90244 0.74900 0.81592 0.91202 0.94062 0.85093 0.92431 0.95324 0.95798 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.24 71.98 0.67 -2.18 16 2 C 0.12 2.63 3.56 44.99 0.16 2.79 16 3 C -0.15 -2.30 9.24 71.98 0.67 -1.64 16 4 N -0.44 -11.82 2.62 -492.19 -1.29 -13.11 16 5 C 0.18 4.73 11.55 180.26 2.08 6.81 16 6 N -0.53 -17.13 11.25 -200.31 -2.25 -19.39 16 7 C -0.05 -1.59 11.79 83.52 0.98 -0.60 16 8 C -0.01 -0.46 6.46 40.95 0.26 -0.19 16 9 C 0.14 4.99 5.51 85.56 0.47 5.46 16 10 N -0.68 -28.52 6.29 -499.46 -3.14 -31.67 16 11 C 0.22 10.85 2.60 44.17 0.11 10.97 16 12 H -0.03 -1.48 7.80 -2.39 -0.02 -1.50 16 13 C -0.11 -5.33 9.19 71.98 0.66 -4.67 16 14 C -0.54 -29.44 8.59 25.60 0.22 -29.22 16 15 H 0.06 3.03 7.62 -2.91 -0.02 3.01 16 16 C 0.02 0.89 5.30 84.66 0.45 1.34 16 17 N -0.92 -52.13 11.32 21.45 0.24 -51.88 16 18 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.15 7.95 -2.38 -0.02 1.13 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.09 2.25 6.95 -2.39 -0.02 2.23 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.08 0.94 7.95 -2.39 -0.02 0.92 16 29 H 0.23 3.83 8.06 -2.91 -0.02 3.80 16 30 H 0.17 5.18 8.06 -2.91 -0.02 5.15 16 31 H 0.07 2.47 6.73 -2.38 -0.02 2.45 16 32 H 0.04 1.52 8.05 -2.39 -0.02 1.50 16 33 H 0.33 14.32 8.21 -89.69 -0.74 13.58 16 34 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -63.37 305.32 2.63 -60.74 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.31 Total: 21.12 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 6.74 Total: -11.14 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -6.44 Total: -116.05 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -63.37 2.63 -60.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474250627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.587 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds