Wall clock time and date at job start Sun Mar 29 2020 21:41:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.47350 * 2 1
4 4 N 1.46499 * 109.47427 * 120.00289 * 2 1 3
5 5 C 1.35044 * 126.39513 * 299.97334 * 4 2 1
6 6 N 1.30494 * 108.70229 * 180.02562 * 5 4 2
7 7 C 1.34126 * 109.25549 * 0.02562 * 6 5 4
8 8 C 1.34666 * 108.02240 * 0.02562 * 7 6 5
9 9 C 1.50699 * 126.59485 * 180.02562 * 8 7 6
10 10 N 1.46902 * 109.47361 * 94.95736 * 9 8 7
11 11 C 1.46899 * 111.00366 * 180.02562 * 10 9 8
12 12 H 1.09000 * 109.47005 * 34.99894 * 11 10 9
13 13 C 1.53000 * 109.47136 * 275.00228 * 11 10 9
14 14 C 1.50694 * 109.47188 * 154.99972 * 11 10 9
15 15 H 1.08000 * 120.00457 * 0.02562 * 14 11 10
16 16 C 1.37883 * 119.99991 * 180.02562 * 14 11 10
17 17 N 1.31517 * 119.99871 * 0.02562 * 16 14 11
18 18 Si 1.86799 * 119.99982 * 179.97438 * 16 14 11
19 19 H 1.48501 * 109.46949 * 60.00006 * 18 16 14
20 20 H 1.48497 * 109.47214 * 179.97438 * 18 16 14
21 21 H 1.48504 * 109.47136 * 299.99925 * 18 16 14
22 22 H 1.08998 * 109.47556 * 180.02562 * 1 2 3
23 23 H 1.09007 * 109.47277 * 300.00068 * 1 2 3
24 24 H 1.08998 * 109.47613 * 59.99768 * 1 2 3
25 25 H 1.09004 * 109.47031 * 240.00394 * 2 1 3
26 26 H 1.09000 * 109.47494 * 180.02562 * 3 2 1
27 27 H 1.09004 * 109.47193 * 299.99970 * 3 2 1
28 28 H 1.08997 * 109.47064 * 59.99605 * 3 2 1
29 29 H 1.08006 * 125.64918 * 359.75453 * 5 4 2
30 30 H 1.07999 * 125.99346 * 179.97438 * 7 6 5
31 31 H 1.09007 * 109.47333 * 214.95855 * 9 8 7
32 32 H 1.09003 * 109.46998 * 334.95820 * 9 8 7
33 33 H 1.00899 * 110.99452 * 303.95982 * 10 9 8
34 34 H 1.08999 * 109.46934 * 179.97438 * 13 11 10
35 35 H 1.09000 * 109.46902 * 299.99730 * 13 11 10
36 36 H 1.09004 * 109.47315 * 59.99600 * 13 11 10
37 37 H 0.96997 * 119.99661 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0183 -0.6907 1.1961
5 6 1.7735 -0.3435 2.4780
6 7 2.3752 -1.1937 3.2640
7 6 3.0197 -2.1046 2.5197
8 6 2.8098 -1.8071 1.2232
9 6 3.3421 -2.5600 0.0312
10 7 2.3335 -3.5236 -0.4297
11 6 2.8190 -4.2780 -1.5929
12 1 3.8911 -4.4478 -1.4942
13 6 2.5444 -3.4800 -2.8691
14 6 2.1051 -5.6032 -1.6657
15 1 1.3646 -5.8592 -0.9225
16 6 2.3975 -6.4888 -2.6813
17 7 3.2997 -6.1773 -3.5861
18 14 1.5131 -8.1318 -2.7712
19 1 0.0524 -7.9009 -2.9059
20 1 2.0037 -8.8943 -3.9471
21 1 1.7798 -8.9059 -1.5322
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3634 0.5139 0.8900
24 1 -0.3634 0.5138 -0.8899
25 1 1.8933 -0.5138 -0.8901
26 1 3.1300 1.4425 -0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6766 1.9563 0.8899
29 1 1.1816 0.5009 2.7994
30 1 3.6051 -2.9312 2.8944
31 1 3.5669 -1.8576 -0.7715
32 1 4.2506 -3.0920 0.3136
33 1 2.0606 -4.1458 0.3163
34 1 2.9050 -4.0396 -3.7322
35 1 1.4722 -3.3102 -2.9678
36 1 3.0607 -2.5214 -2.8164
37 1 3.5050 -6.8002 -4.3007
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001474250627.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:43
Heat of formation + Delta-G solvation = 32.845017 kcal
Electronic energy + Delta-G solvation = -17092.189487 eV
Core-core repulsion = 14483.422636 eV
Total energy + Delta-G solvation = -2608.766851 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 237.154 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-43.04191 -37.79528 -36.85676 -34.74502 -32.26933 -31.26803 -29.31055 -28.16889
-27.38397 -25.60865 -23.87789 -21.96286 -21.76384 -20.33988 -18.62044 -17.70895
-16.92932 -16.32335 -16.19650 -15.56178 -15.28572 -15.17762 -14.71492 -14.40437
-14.06207 -13.90379 -13.65307 -13.19467 -13.10419 -12.93149 -12.73617 -12.68860
-12.35543 -12.29960 -12.21596 -12.08614 -11.86732 -10.94223 -10.86822 -10.58479
-10.43866 -9.36524 -9.07926 -8.14493 -6.28373 1.13136 1.42638 1.43560
1.51452 1.92917 2.22689 2.41295 3.14385 3.60936 3.70992 3.80893
3.89468 4.02287 4.18269 4.30057 4.46063 4.63162 4.66769 4.68553
4.80019 4.83651 4.87893 4.99919 5.04993 5.14448 5.18822 5.27929
5.44045 5.54197 5.64957 5.80951 5.83858 6.20925 6.38112 6.44581
6.70476 6.94011 7.16366 7.41904 8.90758
Molecular weight = 237.15amu
Principal moments of inertia in cm(-1)
A = 0.032278 B = 0.005838 C = 0.005466
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 867.246404 B = 4795.203449 C = 5121.232259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.121 3.879
3 C -0.153 4.153
4 N -0.437 5.437
5 C 0.184 3.816
6 N -0.530 5.530
7 C -0.048 4.048
8 C -0.014 4.014
9 C 0.139 3.861
10 N -0.678 5.678
11 C 0.217 3.783
12 H -0.027 1.027
13 C -0.110 4.110
14 C -0.539 4.539
15 H 0.056 0.944
16 C 0.016 3.984
17 N -0.916 5.916
18 Si 0.960 3.040
19 H -0.272 1.272
20 H -0.283 1.283
21 H -0.272 1.272
22 H 0.041 0.959
23 H 0.078 0.922
24 H 0.093 0.907
25 H 0.085 0.915
26 H 0.051 0.949
27 H 0.095 0.905
28 H 0.079 0.921
29 H 0.235 0.765
30 H 0.167 0.833
31 H 0.070 0.930
32 H 0.041 0.959
33 H 0.332 0.668
34 H 0.057 0.943
35 H 0.028 0.972
36 H 0.023 0.977
37 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.680 14.326 5.849 15.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.019 3.981
3 C -0.211 4.211
4 N -0.120 5.120
5 C -0.098 4.098
6 N -0.248 5.248
7 C -0.196 4.196
8 C -0.131 4.131
9 C 0.009 3.991
10 N -0.309 5.309
11 C 0.108 3.892
12 H -0.009 1.009
13 C -0.169 4.169
14 C -0.577 4.577
15 H 0.074 0.926
16 C -0.183 4.183
17 N -0.555 5.555
18 Si 0.786 3.214
19 H -0.198 1.198
20 H -0.208 1.208
21 H -0.198 1.198
22 H 0.060 0.940
23 H 0.097 0.903
24 H 0.112 0.888
25 H 0.103 0.897
26 H 0.070 0.930
27 H 0.114 0.886
28 H 0.098 0.902
29 H 0.251 0.749
30 H 0.184 0.816
31 H 0.088 0.912
32 H 0.059 0.941
33 H 0.149 0.851
34 H 0.076 0.924
35 H 0.047 0.953
36 H 0.042 0.958
37 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -3.993 14.822 6.004 16.483
hybrid contribution 0.519 -1.803 -0.709 2.005
sum -3.474 13.019 5.295 14.478
Atomic orbital electron populations
1.22084 0.92026 1.02398 1.04489 1.21646 0.96484 0.94391 0.85567
1.22142 1.01337 0.92747 1.04837 1.45663 1.36667 1.21263 1.08397
1.25344 1.03368 1.02233 0.78899 1.70221 1.13868 1.06209 1.34542
1.22186 1.06083 1.01944 0.89378 1.21172 1.01953 0.92984 0.96941
1.20158 0.92872 0.94009 0.92107 1.60730 1.39647 1.20924 1.09573
1.18927 0.91910 0.90712 0.87613 1.00925 1.21519 0.98530 0.96676
1.00156 1.21522 1.22902 1.01527 1.11750 0.92582 1.25681 0.95772
1.01762 0.95120 1.70002 1.33277 1.37266 1.14966 0.85580 0.78888
0.79392 0.77568 1.19763 1.20800 1.19755 0.93964 0.90308 0.88785
0.89668 0.92959 0.88578 0.90244 0.74900 0.81592 0.91202 0.94062
0.85093 0.92431 0.95324 0.95798 0.92763
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.85 9.24 71.98 0.67 -2.18 16
2 C 0.12 2.63 3.56 44.99 0.16 2.79 16
3 C -0.15 -2.30 9.24 71.98 0.67 -1.64 16
4 N -0.44 -11.82 2.62 -492.19 -1.29 -13.11 16
5 C 0.18 4.73 11.55 180.26 2.08 6.81 16
6 N -0.53 -17.13 11.25 -200.31 -2.25 -19.39 16
7 C -0.05 -1.59 11.79 83.52 0.98 -0.60 16
8 C -0.01 -0.46 6.46 40.95 0.26 -0.19 16
9 C 0.14 4.99 5.51 85.56 0.47 5.46 16
10 N -0.68 -28.52 6.29 -499.46 -3.14 -31.67 16
11 C 0.22 10.85 2.60 44.17 0.11 10.97 16
12 H -0.03 -1.48 7.80 -2.39 -0.02 -1.50 16
13 C -0.11 -5.33 9.19 71.98 0.66 -4.67 16
14 C -0.54 -29.44 8.59 25.60 0.22 -29.22 16
15 H 0.06 3.03 7.62 -2.91 -0.02 3.01 16
16 C 0.02 0.89 5.30 84.66 0.45 1.34 16
17 N -0.92 -52.13 11.32 21.45 0.24 -51.88 16
18 Si 0.96 43.29 29.54 68.60 2.03 45.32 16
19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16
20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
22 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
23 H 0.08 1.15 7.95 -2.38 -0.02 1.13 16
24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
25 H 0.09 2.25 6.95 -2.39 -0.02 2.23 16
26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
27 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16
28 H 0.08 0.94 7.95 -2.39 -0.02 0.92 16
29 H 0.23 3.83 8.06 -2.91 -0.02 3.80 16
30 H 0.17 5.18 8.06 -2.91 -0.02 5.15 16
31 H 0.07 2.47 6.73 -2.38 -0.02 2.45 16
32 H 0.04 1.52 8.05 -2.39 -0.02 1.50 16
33 H 0.33 14.32 8.21 -89.69 -0.74 13.58 16
34 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16
35 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16
36 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16
37 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16
Total: -1.00 -63.37 305.32 2.63 -60.74
By element:
Atomic # 1 Polarization: 20.82 SS G_CDS: 0.31 Total: 21.12 kcal
Atomic # 6 Polarization: -17.88 SS G_CDS: 6.74 Total: -11.14 kcal
Atomic # 7 Polarization: -109.60 SS G_CDS: -6.44 Total: -116.05 kcal
Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal
Total: -63.37 2.63 -60.74 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001474250627.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.587 kcal
(2) G-P(sol) polarization free energy of solvation -63.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.214 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.742 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds