Wall clock time and date at job start Sun Mar 29 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47269 * 2 1 4 4 C 1.34946 * 126.03791 * 125.26060 * 3 2 1 5 5 C 1.35318 * 107.74439 * 180.14949 * 4 3 2 6 6 C 1.50706 * 126.04137 * 179.87200 * 5 4 3 7 7 N 1.46893 * 109.47176 * 259.69380 * 6 5 4 8 8 C 1.46903 * 110.99924 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47239 * 34.99837 * 8 7 6 10 10 C 1.52999 * 109.47145 * 274.99722 * 8 7 6 11 11 C 1.50708 * 109.47148 * 154.99657 * 8 7 6 12 12 H 1.07999 * 120.00002 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00015 * 179.97438 * 11 8 7 14 14 N 1.31519 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00249 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47140 * 59.99689 * 15 13 11 17 17 H 1.48494 * 109.47401 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46957 * 300.00209 * 15 13 11 19 19 C 1.39868 * 107.92112 * 359.61225 * 5 4 3 20 20 C 1.50704 * 125.89923 * 180.26560 * 19 5 4 21 21 N 1.30832 * 108.20141 * 0.24051 * 19 5 4 22 22 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47056 * 299.99622 * 1 2 3 24 24 H 1.08999 * 109.47107 * 60.00016 * 1 2 3 25 25 H 1.09002 * 109.47292 * 239.99889 * 2 1 3 26 26 H 1.08999 * 109.47107 * 119.99984 * 2 1 3 27 27 H 1.07997 * 126.13256 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46953 * 19.68840 * 6 5 4 29 29 H 1.09000 * 109.47318 * 139.68438 * 6 5 4 30 30 H 1.00904 * 110.99720 * 303.94906 * 7 6 5 31 31 H 1.08994 * 109.47047 * 179.97438 * 10 8 7 32 32 H 1.09008 * 109.47197 * 299.99972 * 10 8 7 33 33 H 1.08996 * 109.46853 * 59.99926 * 10 8 7 34 34 H 0.96997 * 120.00033 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47166 * 89.99774 * 20 19 5 36 36 H 1.09002 * 109.47021 * 209.99781 * 20 19 5 37 37 H 1.08997 * 109.46944 * 329.99652 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9197 0.8910 5 6 3.0715 3.2137 0.5461 6 6 3.9548 4.2000 1.2659 7 7 3.1295 5.0629 2.1215 8 6 3.9589 6.0390 2.8409 9 1 4.7904 6.3467 2.2068 10 6 4.5026 5.4011 4.1209 11 6 3.1247 7.2431 3.1948 12 1 2.0825 7.2795 2.9138 13 6 3.6916 8.2979 3.8782 14 7 4.9603 8.2529 4.2217 15 14 2.6575 9.7901 4.3175 16 1 1.5246 9.3704 5.1812 17 1 3.4955 10.7762 5.0457 18 1 2.1297 10.4096 3.0753 19 6 2.3125 3.4724 -0.5999 20 6 2.2360 4.7882 -1.3307 21 7 1.6808 2.3747 -0.9281 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.3260 1.4102 1.7307 28 1 4.6754 3.6609 1.8809 29 1 4.4856 4.8120 0.5366 30 1 2.4114 5.5248 1.5838 31 1 5.1183 6.1252 4.6544 32 1 3.6711 5.0934 4.7551 33 1 5.1059 4.5302 3.8649 34 1 5.3593 8.9951 4.7022 35 1 3.0113 4.8243 -2.0960 36 1 1.2572 4.8867 -1.8001 37 1 2.3842 5.6051 -0.6245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621051860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:40 Heat of formation + Delta-G solvation = 66.013308 kcal Electronic energy + Delta-G solvation = -16690.621039 eV Core-core repulsion = 14083.292474 eV Total energy + Delta-G solvation = -2607.328566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98925 -36.00551 -34.60782 -32.58638 -31.27625 -30.27465 -27.91578 -27.33280 -25.24644 -24.00580 -22.55621 -20.44772 -19.70747 -19.00223 -16.78078 -16.22019 -15.39211 -14.86425 -14.37352 -14.20700 -13.73440 -13.43621 -13.28384 -12.95354 -12.54301 -12.36627 -12.11249 -11.92214 -11.87109 -11.51973 -11.43775 -11.13940 -10.86706 -10.73831 -10.24207 -10.18524 -10.04609 -9.82099 -8.93867 -8.78703 -8.43201 -8.03317 -7.11990 -5.97850 -4.03959 2.14061 2.67058 3.06243 3.34374 3.38558 3.41815 4.44395 4.46863 4.84041 4.98857 5.06279 5.11101 5.33200 5.37210 5.53483 5.63584 5.63793 5.84886 5.87133 5.88848 5.98474 6.16701 6.28790 6.43105 6.62714 6.92661 7.02590 7.19807 7.28026 7.30047 7.58090 7.83584 7.96663 8.00095 8.33861 8.49857 8.76566 9.07893 9.61866 11.08369 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.036332 B = 0.005018 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.494365 B = 5578.956870 C = 5762.744382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 N -0.381 5.381 4 C 0.061 3.939 5 C -0.214 4.214 6 C 0.136 3.864 7 N -0.684 5.684 8 C 0.210 3.790 9 H 0.001 0.999 10 C -0.123 4.123 11 C -0.516 4.516 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.079 3.921 20 C -0.073 4.073 21 N -0.304 5.304 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.170 0.830 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.329 0.671 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.003 0.997 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -13.680 -8.036 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.164 5.164 4 C -0.085 4.085 5 C -0.225 4.225 6 C 0.005 3.995 7 N -0.316 5.316 8 C 0.103 3.897 9 H 0.018 0.982 10 C -0.182 4.182 11 C -0.555 4.555 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.087 4.087 20 C -0.132 4.132 21 N -0.127 5.127 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.187 0.813 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.980 -14.721 -8.211 17.576 hybrid contribution 0.291 1.628 0.305 1.682 sum -4.690 -13.092 -7.906 15.997 Atomic orbital electron populations 1.22045 0.94091 1.02410 1.03692 1.21558 0.95888 0.77960 1.03197 1.48438 1.36245 1.09808 1.21933 1.22278 0.95550 0.94845 0.95808 1.20126 1.07699 0.94973 0.99694 1.20122 0.93171 0.92858 0.93349 1.60768 1.15233 1.25768 1.29782 1.19114 0.91465 0.87963 0.91195 0.98157 1.21706 0.99080 0.97708 0.99676 1.21239 0.96667 1.00855 1.36743 0.92346 1.24908 0.94971 0.98393 0.95690 1.69890 1.11398 1.31796 1.39896 0.86602 0.80143 0.82317 0.78565 1.20266 1.21354 1.20324 1.22236 0.95791 0.94979 0.95717 1.20181 1.02492 0.90925 0.99606 1.77150 1.24452 0.96855 1.14229 0.91083 0.91972 0.91225 0.90383 0.88949 0.81325 0.91578 0.95660 0.85311 0.90202 0.95084 0.97771 0.92943 0.90904 0.91220 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.10 37.16 0.38 -1.12 16 2 C 0.14 1.29 7.23 -4.04 -0.03 1.26 16 3 N -0.38 -5.38 3.68 -61.37 -0.23 -5.61 16 4 C 0.06 0.90 11.36 -17.22 -0.20 0.70 16 5 C -0.21 -3.62 5.61 -105.05 -0.59 -4.21 16 6 C 0.14 2.55 5.59 -4.98 -0.03 2.52 16 7 N -0.68 -15.01 6.29 -109.22 -0.69 -15.70 16 8 C 0.21 5.38 2.60 -68.86 -0.18 5.20 16 9 H 0.00 0.02 7.80 -51.93 -0.41 -0.38 16 10 C -0.12 -3.10 9.19 37.16 0.34 -2.76 16 11 C -0.52 -14.29 8.59 -34.44 -0.30 -14.58 16 12 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.08 1.31 7.22 -82.41 -0.59 0.72 16 20 C -0.07 -1.04 10.26 36.01 0.37 -0.67 16 21 N -0.30 -4.98 12.42 33.67 0.42 -4.57 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.17 2.04 8.06 -52.49 -0.42 1.61 16 28 H 0.07 1.23 7.43 -51.93 -0.39 0.85 16 29 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.33 7.19 7.50 -39.29 -0.29 6.89 16 31 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 32 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.21 7.25 -51.93 -0.38 0.83 16 LS Contribution 308.22 15.07 4.64 4.64 Total: -1.00 -30.99 308.22 -7.08 -38.07 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.92 Total: 3.02 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.92 Total: -11.31 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.13 Total: -50.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.99 -7.08 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621051860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.086 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds