Wall clock time and date at job start Sun Mar 29 2020 21:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47269 * 2 1 4 4 C 1.34946 * 126.03791 * 125.26060 * 3 2 1 5 5 C 1.35318 * 107.74439 * 180.14949 * 4 3 2 6 6 C 1.50706 * 126.04137 * 179.87200 * 5 4 3 7 7 N 1.46893 * 109.47176 * 259.69380 * 6 5 4 8 8 C 1.46903 * 110.99924 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47239 * 34.99837 * 8 7 6 10 10 C 1.52999 * 109.47145 * 274.99722 * 8 7 6 11 11 C 1.50708 * 109.47148 * 154.99657 * 8 7 6 12 12 H 1.07999 * 120.00002 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00015 * 179.97438 * 11 8 7 14 14 N 1.31519 * 120.00060 * 359.97438 * 13 11 8 15 15 Si 1.86794 * 120.00249 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47140 * 59.99689 * 15 13 11 17 17 H 1.48494 * 109.47401 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46957 * 300.00209 * 15 13 11 19 19 C 1.39868 * 107.92112 * 359.61225 * 5 4 3 20 20 C 1.50704 * 125.89923 * 180.26560 * 19 5 4 21 21 N 1.30832 * 108.20141 * 0.24051 * 19 5 4 22 22 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47056 * 299.99622 * 1 2 3 24 24 H 1.08999 * 109.47107 * 60.00016 * 1 2 3 25 25 H 1.09002 * 109.47292 * 239.99889 * 2 1 3 26 26 H 1.08999 * 109.47107 * 119.99984 * 2 1 3 27 27 H 1.07997 * 126.13256 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46953 * 19.68840 * 6 5 4 29 29 H 1.09000 * 109.47318 * 139.68438 * 6 5 4 30 30 H 1.00904 * 110.99720 * 303.94906 * 7 6 5 31 31 H 1.08994 * 109.47047 * 179.97438 * 10 8 7 32 32 H 1.09008 * 109.47197 * 299.99972 * 10 8 7 33 33 H 1.08996 * 109.46853 * 59.99926 * 10 8 7 34 34 H 0.96997 * 120.00033 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47166 * 89.99774 * 20 19 5 36 36 H 1.09002 * 109.47021 * 209.99781 * 20 19 5 37 37 H 1.08997 * 109.46944 * 329.99652 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9197 0.8910 5 6 3.0715 3.2137 0.5461 6 6 3.9548 4.2000 1.2659 7 7 3.1295 5.0629 2.1215 8 6 3.9589 6.0390 2.8409 9 1 4.7904 6.3467 2.2068 10 6 4.5026 5.4011 4.1209 11 6 3.1247 7.2431 3.1948 12 1 2.0825 7.2795 2.9138 13 6 3.6916 8.2979 3.8782 14 7 4.9603 8.2529 4.2217 15 14 2.6575 9.7901 4.3175 16 1 1.5246 9.3704 5.1812 17 1 3.4955 10.7762 5.0457 18 1 2.1297 10.4096 3.0753 19 6 2.3125 3.4724 -0.5999 20 6 2.2360 4.7882 -1.3307 21 7 1.6808 2.3747 -0.9281 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.3260 1.4102 1.7307 28 1 4.6754 3.6609 1.8809 29 1 4.4856 4.8120 0.5366 30 1 2.4114 5.5248 1.5838 31 1 5.1183 6.1252 4.6544 32 1 3.6711 5.0934 4.7551 33 1 5.1059 4.5302 3.8649 34 1 5.3593 8.9951 4.7022 35 1 3.0113 4.8243 -2.0960 36 1 1.2572 4.8867 -1.8001 37 1 2.3842 5.6051 -0.6245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621051860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:40 Heat of formation + Delta-G solvation = 45.960401 kcal Electronic energy + Delta-G solvation = -16691.490599 eV Core-core repulsion = 14083.292474 eV Total energy + Delta-G solvation = -2608.198125 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.15316 -37.74797 -35.74820 -34.44363 -32.31630 -31.86191 -29.47979 -28.51178 -27.29586 -25.46247 -23.56117 -21.70518 -21.60148 -20.21539 -18.52758 -17.54350 -16.85331 -16.38905 -15.95368 -15.44105 -15.09839 -14.86847 -14.73306 -14.19640 -13.93127 -13.75572 -13.32241 -13.17006 -12.96900 -12.88017 -12.78321 -12.76043 -12.64528 -12.25408 -12.15225 -12.11880 -11.86386 -11.24272 -10.85749 -10.53339 -10.08843 -9.31182 -8.89257 -8.09220 -6.23124 0.98846 1.44640 1.46447 1.53986 1.68750 1.79819 2.45025 3.19091 3.55068 3.92971 3.97611 4.08135 4.14868 4.36963 4.38930 4.49004 4.53805 4.76849 4.80965 4.83398 4.85031 4.90526 5.03537 5.14009 5.15275 5.26305 5.28267 5.31473 5.53469 5.71029 5.79428 5.92147 6.23147 6.27750 6.55316 6.81853 6.84400 7.05506 7.47191 8.96004 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.036332 B = 0.005018 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.494365 B = 5578.956870 C = 5762.744382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 N -0.376 5.376 4 C 0.071 3.929 5 C -0.245 4.245 6 C 0.145 3.855 7 N -0.681 5.681 8 C 0.214 3.786 9 H -0.029 1.029 10 C -0.112 4.112 11 C -0.537 4.537 12 H 0.056 0.944 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.960 3.040 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.271 1.271 19 C 0.066 3.934 20 C -0.071 4.071 21 N -0.325 5.325 22 H 0.102 0.898 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.199 0.801 28 H 0.068 0.932 29 H 0.017 0.983 30 H 0.328 0.672 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 -15.001 -8.051 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.004 3.996 3 N -0.158 5.158 4 C -0.076 4.076 5 C -0.256 4.256 6 C 0.015 3.985 7 N -0.312 5.312 8 C 0.106 3.894 9 H -0.011 1.011 10 C -0.170 4.170 11 C -0.575 4.575 12 H 0.074 0.926 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.786 3.214 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.100 4.100 20 C -0.130 4.130 21 N -0.149 5.149 22 H 0.121 0.879 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.142 0.858 27 H 0.216 0.784 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.797 -16.071 -8.250 18.972 hybrid contribution 0.535 1.909 0.280 2.003 sum -5.262 -14.161 -7.970 17.081 Atomic orbital electron populations 1.22006 0.93801 1.03937 1.01930 1.22038 0.96160 0.75862 1.05545 1.48854 1.35296 1.10850 1.20817 1.22694 0.94610 0.94278 0.95991 1.20010 1.09182 0.95736 1.00692 1.19994 0.93142 0.92573 0.92792 1.60724 1.15056 1.24688 1.30692 1.18939 0.90758 0.88485 0.91258 1.01141 1.21526 0.98683 0.97753 0.99042 1.21550 0.96823 1.02060 1.37081 0.92599 1.25693 0.96074 1.01148 0.95504 1.70015 1.12771 1.32603 1.40258 0.85580 0.78558 0.78838 0.78441 1.19855 1.20871 1.19575 1.22512 0.95802 0.95746 0.95927 1.20191 1.03555 0.89740 0.99495 1.77101 1.25002 0.97377 1.15410 0.87927 0.93425 0.93198 0.88864 0.85784 0.78429 0.91401 0.96461 0.85447 0.92527 0.95535 0.95674 0.92860 0.89605 0.90222 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.10 71.98 0.73 -1.79 16 2 C 0.12 1.97 7.23 86.38 0.62 2.60 16 3 N -0.38 -9.81 3.68 -348.06 -1.28 -11.09 16 4 C 0.07 1.96 11.36 83.54 0.95 2.91 16 5 C -0.24 -8.09 5.61 -20.14 -0.11 -8.21 16 6 C 0.15 5.44 5.59 85.56 0.48 5.92 16 7 N -0.68 -30.00 6.29 -499.45 -3.14 -33.14 16 8 C 0.21 11.11 2.60 44.17 0.11 11.23 16 9 H -0.03 -1.65 7.80 -2.39 -0.02 -1.67 16 10 C -0.11 -5.63 9.19 71.98 0.66 -4.97 16 11 C -0.54 -29.96 8.59 25.60 0.22 -29.74 16 12 H 0.06 3.07 7.62 -2.91 -0.02 3.05 16 13 C 0.02 0.84 5.30 84.65 0.45 1.29 16 14 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 15 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.07 2.15 7.22 43.10 0.31 2.46 16 20 C -0.07 -2.01 10.26 71.24 0.73 -1.28 16 21 N -0.33 -10.32 12.42 -47.38 -0.59 -10.91 16 22 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 27 H 0.20 4.11 8.06 -2.91 -0.02 4.08 16 28 H 0.07 2.48 7.43 -2.39 -0.02 2.46 16 29 H 0.02 0.67 8.06 -2.39 -0.02 0.65 16 30 H 0.33 14.52 7.50 -89.69 -0.67 13.85 16 31 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 32 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 33 H 0.02 1.11 7.45 -2.39 -0.02 1.09 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.08 7.25 -2.39 -0.02 2.06 16 Total: -1.00 -66.25 308.22 2.78 -63.47 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.37 Total: 18.30 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 5.15 Total: -19.58 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.77 Total: -108.03 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.25 2.78 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621051860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.426 kcal (2) G-P(sol) polarization free energy of solvation -66.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds