Wall clock time and date at job start Sun Mar 29 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99676 * 2 1 4 4 C 1.53002 * 109.47164 * 125.00057 * 3 2 1 5 5 C 1.53005 * 109.47180 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.41580 * 57.31527 * 5 4 3 7 7 C 1.54907 * 110.37126 * 179.62538 * 5 4 3 8 8 C 1.55144 * 101.65210 * 155.89919 * 7 5 4 9 9 C 1.54315 * 103.01973 * 324.34978 * 8 7 5 10 10 N 1.47451 * 107.23296 * 22.27991 * 9 8 7 11 11 C 1.46904 * 110.99756 * 123.26063 * 10 9 8 12 12 C 1.52997 * 109.46983 * 69.87585 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 H 1.07998 * 120.00050 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.99710 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00050 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47479 * 5.00155 * 3 2 1 26 26 H 1.09006 * 109.47250 * 244.99687 * 3 2 1 27 27 H 1.09006 * 109.46947 * 59.99833 * 4 3 2 28 28 H 1.09002 * 109.47093 * 300.00285 * 4 3 2 29 29 H 1.09004 * 110.99252 * 37.81517 * 7 5 4 30 30 H 1.09001 * 110.99446 * 273.99537 * 7 5 4 31 31 H 1.08997 * 110.70275 * 205.96371 * 8 7 5 32 32 H 1.09007 * 110.70183 * 82.72729 * 8 7 5 33 33 H 1.09001 * 109.88577 * 262.87755 * 9 8 7 34 34 H 1.08997 * 110.02678 * 141.76157 * 9 8 7 35 35 H 1.08995 * 109.46789 * 309.87200 * 11 10 9 36 36 H 1.08998 * 109.46713 * 189.87643 * 11 10 9 37 37 H 1.09000 * 109.47849 * 59.99743 * 12 11 10 38 38 H 1.09007 * 109.47288 * 299.99336 * 12 11 10 39 39 H 1.09000 * 109.47211 * 59.99130 * 13 12 11 40 40 H 1.09007 * 109.46376 * 299.99672 * 13 12 11 41 41 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1813 6 1 3.1068 3.4978 1.2223 7 6 4.7846 2.7125 2.3762 8 6 5.8387 3.7310 1.8678 9 6 5.9169 3.4255 0.3572 10 7 4.6579 2.7567 -0.0190 11 6 3.9750 3.4870 -1.0953 12 6 4.7695 3.3409 -2.3946 13 6 4.0586 4.1021 -3.5154 14 6 4.8408 3.9576 -4.7954 15 1 5.7539 3.3809 -4.8081 16 6 4.3941 4.5668 -5.9487 17 7 3.2824 5.2693 -5.9332 18 14 5.3677 4.3942 -7.5335 19 1 4.8948 3.1991 -8.2774 20 1 5.1726 5.6063 -8.3689 21 1 6.8097 4.2398 -7.2142 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 3.7400 0.5066 1.0920 28 1 2.4772 1.2356 2.1130 29 1 5.2380 1.7371 2.5535 30 1 4.2883 3.0797 3.2745 31 1 6.8028 3.5590 2.3463 32 1 5.5000 4.7531 2.0372 33 1 6.7615 2.7666 0.1554 34 1 6.0271 4.3523 -0.2058 35 1 3.9033 4.5417 -0.8298 36 1 2.9741 3.0783 -1.2334 37 1 4.8413 2.2861 -2.6600 38 1 5.7705 3.7497 -2.2564 39 1 3.9872 5.1568 -3.2498 40 1 3.0575 3.6936 -3.6537 41 1 2.9683 5.6982 -6.7445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648525984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:04 Heat of formation + Delta-G solvation = -5.792079 kcal Electronic energy + Delta-G solvation = -17015.475683 eV Core-core repulsion = 14508.573745 eV Total energy + Delta-G solvation = -2506.901938 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27071 -35.41858 -34.31775 -32.38873 -31.46415 -29.94358 -27.32088 -26.09040 -23.66959 -22.28509 -21.28798 -19.81195 -19.59515 -19.43404 -16.55585 -16.14209 -15.34634 -15.07107 -14.41198 -14.14403 -13.99757 -13.45158 -13.26916 -12.78023 -12.42894 -12.13617 -12.09091 -11.96267 -11.56628 -11.23913 -11.09682 -10.96626 -10.83010 -10.66887 -10.61042 -10.49778 -10.42248 -10.17351 -9.59058 -9.27123 -9.15626 -8.99718 -8.30419 -7.98452 -5.95828 -3.97615 2.37528 3.34846 3.40733 3.44518 4.19814 4.50223 4.65186 4.72288 5.00319 5.05711 5.16797 5.33664 5.39985 5.43760 5.53742 5.56530 5.70307 5.77421 5.80904 5.86176 5.90365 5.93491 5.96689 6.11460 6.16805 6.29395 6.32855 6.39187 6.43304 6.72276 6.76951 6.85335 6.90926 7.18036 7.37475 7.51219 7.73432 7.88583 8.05075 8.48867 9.09692 9.66217 11.15681 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.005550 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.996885 B = 5043.926240 C = 6112.771387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.103 4.103 4 C -0.093 4.093 5 C 0.068 3.932 6 H 0.051 0.949 7 C -0.124 4.124 8 C -0.143 4.143 9 C 0.042 3.958 10 N -0.524 5.524 11 C 0.044 3.956 12 C -0.103 4.103 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 -6.468 16.784 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.160 4.160 3 C -0.140 4.140 4 C -0.131 4.131 5 C -0.040 4.040 6 H 0.069 0.931 7 C -0.162 4.162 8 C -0.181 4.181 9 C -0.085 4.085 10 N -0.248 5.248 11 C -0.083 4.083 12 C -0.141 4.141 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.124 0.876 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.303 -6.848 16.473 17.842 hybrid contribution 0.236 0.826 -0.741 1.134 sum -0.068 -6.022 15.732 16.845 Atomic orbital electron populations 1.23794 0.96051 1.01482 1.03088 1.23031 0.95916 0.98793 0.98277 1.20970 0.97933 0.94597 1.00483 1.21423 0.97185 0.97136 0.97331 1.22600 0.94461 0.97264 0.89700 0.93069 1.22721 0.96502 0.99735 0.97205 1.22789 0.99500 0.99083 0.96736 1.22804 0.93683 0.98165 0.93892 1.63550 1.03983 1.50283 1.06994 1.22637 0.98633 0.94950 0.92064 1.21621 0.98317 1.00996 0.93151 1.19077 0.95690 0.94968 0.91860 1.21258 1.08760 1.31320 0.94175 0.92712 1.25022 0.95127 0.95336 0.99018 1.69966 1.21737 1.33819 1.28158 0.86611 0.80474 0.77487 0.83532 1.20662 1.21284 1.19897 0.88771 0.88952 0.87649 0.92088 0.89019 0.91234 0.92280 0.90759 0.91389 0.91124 0.91806 0.90888 0.92313 0.95496 0.90642 0.92713 0.93644 0.96940 0.96681 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.33 14.32 29.01 0.42 -1.91 16 2 C -0.14 -1.70 9.52 -36.03 -0.34 -2.04 16 3 C -0.10 -1.33 4.46 -27.88 -0.12 -1.46 16 4 C -0.09 -1.09 4.92 -26.73 -0.13 -1.22 16 5 C 0.07 0.86 2.58 -66.19 -0.17 0.69 16 6 H 0.05 0.68 7.81 -51.93 -0.41 0.27 16 7 C -0.12 -1.31 6.50 -24.59 -0.16 -1.47 16 8 C -0.14 -1.59 6.94 -24.91 -0.17 -1.76 16 9 C 0.04 0.59 6.21 -2.83 -0.02 0.58 16 10 N -0.52 -7.94 4.62 -223.39 -1.03 -8.97 16 11 C 0.04 0.79 4.04 -3.82 -0.02 0.77 16 12 C -0.10 -2.20 5.18 -26.73 -0.14 -2.34 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 22 H 0.09 1.04 7.84 -52.49 -0.41 0.63 16 23 H 0.09 0.90 8.06 -52.49 -0.42 0.48 16 24 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.06 0.79 7.79 -51.93 -0.40 0.39 16 26 H 0.09 1.41 6.00 -51.93 -0.31 1.10 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.89 6.91 -51.93 -0.36 0.53 16 35 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 36 H 0.08 1.34 5.29 -51.93 -0.27 1.06 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.04 0.96 7.14 -51.93 -0.37 0.59 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -30.02 323.23 -9.42 -39.43 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.56 Total: -2.18 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -1.41 Total: -23.48 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.30 Total: -35.66 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.02 -9.42 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648525984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.642 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds