Wall clock time and date at job start Sun Mar 29 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99676 * 2 1 4 4 C 1.53002 * 109.47164 * 125.00057 * 3 2 1 5 5 C 1.53005 * 109.47180 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.41580 * 57.31527 * 5 4 3 7 7 C 1.54907 * 110.37126 * 179.62538 * 5 4 3 8 8 C 1.55144 * 101.65210 * 155.89919 * 7 5 4 9 9 C 1.54315 * 103.01973 * 324.34978 * 8 7 5 10 10 N 1.47451 * 107.23296 * 22.27991 * 9 8 7 11 11 C 1.46904 * 110.99756 * 123.26063 * 10 9 8 12 12 C 1.52997 * 109.46983 * 69.87585 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 H 1.07998 * 120.00050 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.99710 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.00050 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47479 * 5.00155 * 3 2 1 26 26 H 1.09006 * 109.47250 * 244.99687 * 3 2 1 27 27 H 1.09006 * 109.46947 * 59.99833 * 4 3 2 28 28 H 1.09002 * 109.47093 * 300.00285 * 4 3 2 29 29 H 1.09004 * 110.99252 * 37.81517 * 7 5 4 30 30 H 1.09001 * 110.99446 * 273.99537 * 7 5 4 31 31 H 1.08997 * 110.70275 * 205.96371 * 8 7 5 32 32 H 1.09007 * 110.70183 * 82.72729 * 8 7 5 33 33 H 1.09001 * 109.88577 * 262.87755 * 9 8 7 34 34 H 1.08997 * 110.02678 * 141.76157 * 9 8 7 35 35 H 1.08995 * 109.46789 * 309.87200 * 11 10 9 36 36 H 1.08998 * 109.46713 * 189.87643 * 11 10 9 37 37 H 1.09000 * 109.47849 * 59.99743 * 12 11 10 38 38 H 1.09007 * 109.47288 * 299.99336 * 12 11 10 39 39 H 1.09000 * 109.47211 * 59.99130 * 13 12 11 40 40 H 1.09007 * 109.46376 * 299.99672 * 13 12 11 41 41 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1813 6 1 3.1068 3.4978 1.2223 7 6 4.7846 2.7125 2.3762 8 6 5.8387 3.7310 1.8678 9 6 5.9169 3.4255 0.3572 10 7 4.6579 2.7567 -0.0190 11 6 3.9750 3.4870 -1.0953 12 6 4.7695 3.3409 -2.3946 13 6 4.0586 4.1021 -3.5154 14 6 4.8408 3.9576 -4.7954 15 1 5.7539 3.3809 -4.8081 16 6 4.3941 4.5668 -5.9487 17 7 3.2824 5.2693 -5.9332 18 14 5.3677 4.3942 -7.5335 19 1 4.8948 3.1991 -8.2774 20 1 5.1726 5.6063 -8.3689 21 1 6.8097 4.2398 -7.2142 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 3.7400 0.5066 1.0920 28 1 2.4772 1.2356 2.1130 29 1 5.2380 1.7371 2.5535 30 1 4.2883 3.0797 3.2745 31 1 6.8028 3.5590 2.3463 32 1 5.5000 4.7531 2.0372 33 1 6.7615 2.7666 0.1554 34 1 6.0271 4.3523 -0.2058 35 1 3.9033 4.5417 -0.8298 36 1 2.9741 3.0783 -1.2334 37 1 4.8413 2.2861 -2.6600 38 1 5.7705 3.7497 -2.2564 39 1 3.9872 5.1568 -3.2498 40 1 3.0575 3.6936 -3.6537 41 1 2.9683 5.6982 -6.7445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648525984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:03 Heat of formation + Delta-G solvation = -22.297130 kcal Electronic energy + Delta-G solvation = -17016.191395 eV Core-core repulsion = 14508.573745 eV Total energy + Delta-G solvation = -2507.617650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38664 -36.46611 -36.09646 -34.25831 -32.41962 -31.57677 -28.31565 -27.92184 -25.13306 -23.73072 -22.54763 -21.12537 -20.84160 -20.45230 -18.51221 -17.50661 -16.69600 -16.35255 -16.01959 -15.55125 -15.14983 -14.68456 -14.36865 -14.31955 -13.82928 -13.64307 -13.48441 -13.26074 -12.84562 -12.76308 -12.58709 -12.44119 -12.24037 -11.98194 -11.95971 -11.74060 -11.50997 -11.47325 -11.37266 -11.18455 -11.02435 -10.56304 -10.10694 -9.21040 -8.21016 -6.32306 1.38897 1.40700 1.45775 1.51896 2.40217 3.04153 3.11888 3.68084 3.76712 4.01184 4.11444 4.19820 4.23179 4.35374 4.39975 4.50343 4.57294 4.61697 4.73123 4.77379 4.85151 4.94248 4.98231 5.00814 5.05282 5.07708 5.10535 5.17885 5.26518 5.30319 5.39399 5.44632 5.52086 5.72913 5.79707 5.84596 5.95792 6.15272 6.20018 6.29726 6.84133 7.36968 8.91035 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.005550 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.996885 B = 5043.926240 C = 6112.771387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.101 4.101 4 C -0.085 4.085 5 C 0.063 3.937 6 H 0.044 0.956 7 C -0.115 4.115 8 C -0.136 4.136 9 C 0.035 3.965 10 N -0.530 5.530 11 C 0.059 3.941 12 C -0.086 4.086 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.264 1.264 22 H 0.092 0.908 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.045 0.955 39 H -0.012 1.012 40 H -0.009 1.009 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -7.453 17.843 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.174 4.174 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.045 4.045 6 H 0.063 0.937 7 C -0.153 4.153 8 C -0.174 4.174 9 C -0.092 4.092 10 N -0.254 5.254 11 C -0.069 4.069 12 C -0.124 4.124 13 C -0.011 4.011 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.188 1.188 22 H 0.111 0.889 23 H 0.128 0.872 24 H 0.133 0.867 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.006 0.994 40 H 0.009 0.991 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.462 -7.841 17.552 19.229 hybrid contribution -0.049 1.140 -1.062 1.559 sum 0.413 -6.701 16.490 17.805 Atomic orbital electron populations 1.23977 0.95921 1.02294 1.01755 1.23069 0.96274 0.98560 0.99456 1.20895 0.97972 0.95208 0.99757 1.21384 0.96855 0.96460 0.97576 1.22737 0.94697 0.97559 0.89530 0.93738 1.22717 0.95635 1.00132 0.96772 1.22760 1.00874 0.99373 0.94395 1.22879 0.93064 0.97261 0.96036 1.63504 1.04656 1.49661 1.07592 1.22320 0.98137 0.94809 0.91593 1.21354 0.98111 0.99569 0.93379 1.18963 0.94848 0.93946 0.93302 1.21673 1.09223 1.31704 0.95474 0.92414 1.25991 0.96159 0.94671 1.02986 1.70097 1.23358 1.34527 1.29444 0.85438 0.79174 0.77827 0.78561 1.19672 1.20552 1.18777 0.88917 0.87229 0.86706 0.92660 0.91938 0.91266 0.90218 0.89871 0.89234 0.89093 0.91692 0.90697 0.94147 0.96369 0.90859 0.93197 0.93666 0.99376 0.99092 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.29 14.32 67.78 0.97 -3.32 16 2 C -0.16 -3.58 9.52 25.64 0.24 -3.33 16 3 C -0.10 -2.61 4.46 29.85 0.13 -2.48 16 4 C -0.08 -1.86 4.92 30.60 0.15 -1.71 16 5 C 0.06 1.51 2.58 45.39 0.12 1.62 16 6 H 0.04 1.14 7.81 -2.39 -0.02 1.12 16 7 C -0.11 -2.11 6.50 31.98 0.21 -1.90 16 8 C -0.14 -2.72 6.94 31.78 0.22 -2.49 16 9 C 0.04 0.96 6.21 86.64 0.54 1.50 16 10 N -0.53 -15.92 4.62 -860.66 -3.98 -19.90 16 11 C 0.06 2.18 4.04 86.30 0.35 2.53 16 12 C -0.09 -3.80 5.18 30.59 0.16 -3.65 16 13 C 0.03 1.49 4.97 29.85 0.15 1.64 16 14 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16 18 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 22 H 0.09 1.97 7.84 -2.91 -0.02 1.94 16 23 H 0.11 1.92 8.06 -2.91 -0.02 1.90 16 24 H 0.11 2.39 8.06 -2.91 -0.02 2.37 16 25 H 0.05 1.45 7.79 -2.39 -0.02 1.43 16 26 H 0.06 1.98 6.00 -2.38 -0.01 1.96 16 27 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.23 6.91 -2.39 -0.02 1.22 16 35 H 0.02 0.69 7.96 -2.39 -0.02 0.67 16 36 H 0.07 2.71 5.29 -2.39 -0.01 2.70 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.04 1.97 7.14 -2.38 -0.02 1.95 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -65.09 323.23 3.21 -61.87 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.95 Total: 11.65 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 3.93 Total: -43.05 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -3.69 Total: -77.82 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -65.09 3.21 -61.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648525984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.578 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds