Wall clock time and date at job start Sun Mar 29 2020 22:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 H 1.09000 * 109.47175 * 53.78040 * 3 2 1 5 5 C 1.50698 * 109.47522 * 173.78667 * 3 2 1 6 6 H 1.08000 * 120.00131 * 115.35228 * 5 3 2 7 7 C 1.37880 * 119.99462 * 295.35459 * 5 3 2 8 8 N 1.31508 * 120.00338 * 352.87997 * 7 5 3 9 9 Si 1.86806 * 119.99561 * 172.87817 * 7 5 3 10 10 H 1.48498 * 109.46900 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.46900 * 300.00240 * 9 7 5 12 12 H 1.48497 * 109.47017 * 60.00314 * 9 7 5 13 13 N 1.46904 * 109.46895 * 293.78656 * 3 2 1 14 14 C 1.46894 * 111.00369 * 158.23971 * 13 3 2 15 15 H 1.09004 * 110.24537 * 35.06632 * 14 13 3 16 16 C 1.53913 * 110.27822 * 272.95104 * 14 13 3 17 17 C 1.53675 * 105.86221 * 212.09279 * 16 14 13 18 18 C 1.53203 * 107.21256 * 19.18174 * 17 16 14 19 19 H 1.09002 * 111.23990 * 237.02235 * 18 17 16 20 20 C 1.53539 * 110.22522 * 114.18085 * 18 17 16 21 21 C 1.54266 * 106.52451 * 240.28274 * 20 18 17 22 22 C 1.54748 * 104.14437 * 25.32327 * 21 20 18 23 23 C 1.53982 * 110.28061 * 157.07826 * 14 13 3 24 24 H 1.09005 * 112.36439 * 270.25614 * 23 14 13 25 25 H 1.08994 * 109.46927 * 185.72009 * 1 2 3 26 26 H 1.09001 * 109.47116 * 305.71580 * 1 2 3 27 27 H 1.08999 * 109.47091 * 65.72052 * 1 2 3 28 28 H 1.08995 * 109.47141 * 240.00022 * 2 1 3 29 29 H 1.09004 * 109.47228 * 119.99060 * 2 1 3 30 30 H 0.97001 * 120.00298 * 356.10132 * 8 7 5 31 31 H 1.00899 * 111.00159 * 34.28079 * 13 3 2 32 32 H 1.08998 * 110.17472 * 331.19271 * 16 14 13 33 33 H 1.09000 * 110.17185 * 92.99945 * 16 14 13 34 34 H 1.08998 * 109.89310 * 259.77623 * 17 16 14 35 35 H 1.09007 * 109.88978 * 138.57800 * 17 16 14 36 36 H 1.08994 * 110.04778 * 121.01394 * 20 18 17 37 37 H 1.09004 * 110.08897 * 359.56828 * 20 18 17 38 38 H 1.09000 * 110.49645 * 266.65932 * 21 20 18 39 39 H 1.09003 * 110.49601 * 143.98402 * 21 20 18 40 40 H 1.09005 * 110.65386 * 204.04559 * 22 21 20 41 41 H 1.09006 * 110.79609 * 81.01340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9875 0.8291 5 6 3.5391 1.4454 0.1538 6 1 4.1633 1.8161 -0.6458 7 6 4.1138 0.9746 1.3153 8 7 3.3558 0.6545 2.3412 9 14 5.9692 0.7914 1.4317 10 1 6.3318 0.2696 2.7739 11 1 6.4394 -0.1558 0.3892 12 1 6.6112 2.1143 1.2244 13 7 1.6766 2.0904 -1.2674 14 6 1.6694 3.5527 -1.1281 15 1 2.4547 3.8701 -0.4420 16 6 0.2954 4.0343 -0.6291 17 6 0.0815 5.4195 -1.2592 18 6 1.0364 5.5271 -2.4525 19 1 1.6959 6.3893 -2.3540 20 6 0.2408 5.6077 -3.7632 21 6 0.6665 4.3907 -4.6104 22 6 1.1447 3.3525 -3.5672 23 6 1.8594 4.2206 -2.5025 24 1 2.9099 4.3886 -2.7403 25 1 -0.3633 -1.0225 0.1024 26 1 -0.3633 0.5999 0.8344 27 1 -0.3633 0.4226 -0.9368 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 2.3980 0.8026 2.3015 31 1 0.7861 1.7547 -1.6028 32 1 -0.4853 3.3478 -0.9567 33 1 0.2965 4.1121 0.4581 34 1 0.3093 6.1975 -0.5306 35 1 -0.9495 5.5171 -1.5993 36 1 0.4806 6.5315 -4.2895 37 1 -0.8283 5.5629 -3.5557 38 1 1.4814 4.6597 -5.2824 39 1 -0.1820 4.0025 -5.1739 40 1 1.8418 2.6467 -4.0189 41 1 0.2970 2.8262 -3.1283 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652111219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:55 Heat of formation + Delta-G solvation = -31.810077 kcal Electronic energy + Delta-G solvation = -18064.361834 eV Core-core repulsion = 15556.331672 eV Total energy + Delta-G solvation = -2508.030163 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.69511 -36.22399 -33.43308 -31.97740 -31.09042 -28.58938 -27.05173 -25.77092 -24.19230 -22.81067 -20.74435 -19.94784 -19.42685 -18.39043 -16.57816 -16.23799 -15.03081 -14.79849 -14.01247 -13.86749 -13.67861 -13.34507 -12.92182 -12.45525 -12.29148 -12.11595 -11.61891 -11.48849 -11.15394 -10.98329 -10.75633 -10.72379 -10.67300 -10.44236 -10.39865 -10.15421 -10.08908 -10.03514 -9.89112 -9.84632 -9.52806 -8.58056 -8.29653 -7.16636 -6.24339 -3.95033 3.48345 3.50452 3.68864 4.58136 4.66433 4.77055 4.83981 5.30780 5.40881 5.42044 5.46360 5.52343 5.65646 5.79113 5.87316 5.93776 5.94139 5.96414 6.00340 6.08336 6.14754 6.18353 6.19400 6.22256 6.29563 6.38851 6.56052 6.58507 6.64594 6.67232 6.75429 6.82961 6.89481 7.00162 7.26221 7.47466 8.14175 8.21930 8.56035 8.75890 9.01131 9.74498 11.10135 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.007244 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.555016 B = 3864.428357 C = 4214.256343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.208 3.792 4 H -0.009 1.009 5 C -0.574 4.574 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.290 1.290 13 N -0.670 5.670 14 C 0.100 3.900 15 H 0.083 0.917 16 C -0.150 4.150 17 C -0.110 4.110 18 C -0.095 4.095 19 H 0.068 0.932 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.100 4.100 23 C -0.079 4.079 24 H 0.078 0.922 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.268 0.732 31 H 0.316 0.684 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 7.338 -9.491 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.100 3.900 4 H 0.009 0.991 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.894 3.106 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.217 1.217 13 N -0.300 5.300 14 C -0.011 4.011 15 H 0.101 0.899 16 C -0.189 4.189 17 C -0.148 4.148 18 C -0.114 4.114 19 H 0.086 0.914 20 C -0.154 4.154 21 C -0.166 4.166 22 C -0.137 4.137 23 C -0.098 4.098 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.039 6.771 -8.728 12.142 hybrid contribution -2.117 0.676 -0.421 2.262 sum -7.156 7.447 -9.150 13.798 Atomic orbital electron populations 1.21884 0.99014 1.00021 0.99983 1.21804 0.91885 1.00735 1.02141 1.19261 0.96205 0.89260 0.85265 0.99142 1.21974 0.91018 1.45095 1.03212 0.92748 1.25728 1.06594 0.94140 0.92286 1.70796 1.07386 1.45815 1.31445 0.83607 0.74787 0.76400 0.75836 1.21035 1.21530 1.21671 1.60675 1.34135 1.02885 1.32301 1.22008 0.94980 0.89132 0.95019 0.89859 1.22808 0.99316 0.96520 1.00275 1.21951 0.98515 0.97422 0.96949 1.22005 0.96508 0.98446 0.94405 0.91368 1.22250 0.99401 0.97952 0.95748 1.22417 1.00130 0.96147 0.97917 1.22278 0.99679 0.96750 0.95030 1.22456 0.98458 0.93018 0.95844 0.90328 0.94074 0.93845 0.94072 0.92976 0.91012 0.92045 0.86546 0.92551 0.92273 0.92474 0.92321 0.92626 0.92149 0.92150 0.92433 0.91448 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.64 37.16 0.36 -2.49 16 2 C -0.13 -2.92 5.22 -26.73 -0.14 -3.06 16 3 C 0.21 5.09 1.53 -68.86 -0.11 4.99 16 4 H -0.01 -0.24 7.16 -51.93 -0.37 -0.61 16 5 C -0.57 -16.02 8.28 -34.44 -0.29 -16.31 16 6 H 0.05 1.57 7.82 -52.49 -0.41 1.16 16 7 C 0.02 0.45 5.19 -17.82 -0.09 0.35 16 8 N -0.92 -27.33 12.82 55.43 0.71 -26.62 16 9 Si 1.06 25.49 29.91 -169.99 -5.08 20.40 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.67 -13.91 5.28 -99.92 -0.53 -14.44 16 14 C 0.10 1.88 2.71 -66.73 -0.18 1.70 16 15 H 0.08 1.84 7.57 -51.93 -0.39 1.45 16 16 C -0.15 -2.46 5.96 -25.90 -0.15 -2.61 16 17 C -0.11 -1.51 6.42 -26.28 -0.17 -1.68 16 18 C -0.09 -1.28 3.61 -89.45 -0.32 -1.60 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.12 -1.36 6.43 -25.79 -0.17 -1.53 16 21 C -0.13 -1.56 6.84 -25.15 -0.17 -1.73 16 22 C -0.10 -1.46 5.36 -24.83 -0.13 -1.59 16 23 C -0.08 -1.25 3.78 -88.34 -0.33 -1.59 16 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.70 6.68 -51.93 -0.35 0.35 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.84 6.26 -51.93 -0.32 1.52 16 30 H 0.27 7.96 6.19 -40.82 -0.25 7.71 16 31 H 0.32 6.02 4.65 -39.29 -0.18 5.84 16 32 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.73 7.06 -51.92 -0.37 0.36 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.68 7.07 -51.93 -0.37 0.31 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.93 6.30 -51.93 -0.33 0.60 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -28.61 304.12 -9.39 -38.00 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.18 Total: 5.23 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -1.90 Total: -27.16 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.18 Total: -41.06 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.61 -9.39 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.193 kcal (2) G-P(sol) polarization free energy of solvation -28.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds