Wall clock time and date at job start Sun Mar 29 2020 22:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 H 1.09000 * 109.47175 * 53.78040 * 3 2 1 5 5 C 1.50698 * 109.47522 * 173.78667 * 3 2 1 6 6 H 1.08000 * 120.00131 * 115.35228 * 5 3 2 7 7 C 1.37880 * 119.99462 * 295.35459 * 5 3 2 8 8 N 1.31508 * 120.00338 * 352.87997 * 7 5 3 9 9 Si 1.86806 * 119.99561 * 172.87817 * 7 5 3 10 10 H 1.48498 * 109.46900 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.46900 * 300.00240 * 9 7 5 12 12 H 1.48497 * 109.47017 * 60.00314 * 9 7 5 13 13 N 1.46904 * 109.46895 * 293.78656 * 3 2 1 14 14 C 1.46894 * 111.00369 * 158.23971 * 13 3 2 15 15 H 1.09004 * 110.24537 * 35.06632 * 14 13 3 16 16 C 1.53913 * 110.27822 * 272.95104 * 14 13 3 17 17 C 1.53675 * 105.86221 * 212.09279 * 16 14 13 18 18 C 1.53203 * 107.21256 * 19.18174 * 17 16 14 19 19 H 1.09002 * 111.23990 * 237.02235 * 18 17 16 20 20 C 1.53539 * 110.22522 * 114.18085 * 18 17 16 21 21 C 1.54266 * 106.52451 * 240.28274 * 20 18 17 22 22 C 1.54748 * 104.14437 * 25.32327 * 21 20 18 23 23 C 1.53982 * 110.28061 * 157.07826 * 14 13 3 24 24 H 1.09005 * 112.36439 * 270.25614 * 23 14 13 25 25 H 1.08994 * 109.46927 * 185.72009 * 1 2 3 26 26 H 1.09001 * 109.47116 * 305.71580 * 1 2 3 27 27 H 1.08999 * 109.47091 * 65.72052 * 1 2 3 28 28 H 1.08995 * 109.47141 * 240.00022 * 2 1 3 29 29 H 1.09004 * 109.47228 * 119.99060 * 2 1 3 30 30 H 0.97001 * 120.00298 * 356.10132 * 8 7 5 31 31 H 1.00899 * 111.00159 * 34.28079 * 13 3 2 32 32 H 1.08998 * 110.17472 * 331.19271 * 16 14 13 33 33 H 1.09000 * 110.17185 * 92.99945 * 16 14 13 34 34 H 1.08998 * 109.89310 * 259.77623 * 17 16 14 35 35 H 1.09007 * 109.88978 * 138.57800 * 17 16 14 36 36 H 1.08994 * 110.04778 * 121.01394 * 20 18 17 37 37 H 1.09004 * 110.08897 * 359.56828 * 20 18 17 38 38 H 1.09000 * 110.49645 * 266.65932 * 21 20 18 39 39 H 1.09003 * 110.49601 * 143.98402 * 21 20 18 40 40 H 1.09005 * 110.65386 * 204.04559 * 22 21 20 41 41 H 1.09006 * 110.79609 * 81.01340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9875 0.8291 5 6 3.5391 1.4454 0.1538 6 1 4.1633 1.8161 -0.6458 7 6 4.1138 0.9746 1.3153 8 7 3.3558 0.6545 2.3412 9 14 5.9692 0.7914 1.4317 10 1 6.3318 0.2696 2.7739 11 1 6.4394 -0.1558 0.3892 12 1 6.6112 2.1143 1.2244 13 7 1.6766 2.0904 -1.2674 14 6 1.6694 3.5527 -1.1281 15 1 2.4547 3.8701 -0.4420 16 6 0.2954 4.0343 -0.6291 17 6 0.0815 5.4195 -1.2592 18 6 1.0364 5.5271 -2.4525 19 1 1.6959 6.3893 -2.3540 20 6 0.2408 5.6077 -3.7632 21 6 0.6665 4.3907 -4.6104 22 6 1.1447 3.3525 -3.5672 23 6 1.8594 4.2206 -2.5025 24 1 2.9099 4.3886 -2.7403 25 1 -0.3633 -1.0225 0.1024 26 1 -0.3633 0.5999 0.8344 27 1 -0.3633 0.4226 -0.9368 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 2.3980 0.8026 2.3015 31 1 0.7861 1.7547 -1.6028 32 1 -0.4853 3.3478 -0.9567 33 1 0.2965 4.1121 0.4581 34 1 0.3093 6.1975 -0.5306 35 1 -0.9495 5.5171 -1.5993 36 1 0.4806 6.5315 -4.2895 37 1 -0.8283 5.5629 -3.5557 38 1 1.4814 4.6597 -5.2824 39 1 -0.1820 4.0025 -5.1739 40 1 1.8418 2.6467 -4.0189 41 1 0.2970 2.8262 -3.1283 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652111219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:54 Heat of formation + Delta-G solvation = -47.384918 kcal Electronic energy + Delta-G solvation = -18065.037210 eV Core-core repulsion = 15556.331672 eV Total energy + Delta-G solvation = -2508.705538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98129 -37.98600 -34.95072 -33.74900 -32.62454 -30.00785 -28.27275 -27.60226 -25.66480 -24.67446 -22.00008 -21.64345 -20.79596 -19.64919 -18.68505 -17.53055 -16.58682 -16.36214 -15.67823 -15.28933 -15.02200 -14.84497 -14.37106 -14.03142 -14.00647 -13.52050 -13.28573 -12.99044 -12.74648 -12.58168 -12.36300 -12.17163 -12.08041 -11.95262 -11.81285 -11.67718 -11.54482 -11.36919 -11.27827 -11.15536 -11.01498 -10.62382 -10.46248 -8.98625 -8.50354 -6.24249 1.51259 1.58631 1.78303 2.57711 3.20243 3.37447 3.59438 3.70053 3.93792 4.20480 4.25434 4.31910 4.35843 4.37612 4.46060 4.50382 4.66348 4.66980 4.71027 4.82221 4.87388 4.93549 4.96560 5.07194 5.08189 5.13022 5.14589 5.16635 5.22021 5.29963 5.37829 5.44345 5.46462 5.53290 5.58886 5.61518 6.06925 6.19876 6.57156 6.63504 7.02370 7.52791 8.81367 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.007244 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.555016 B = 3864.428357 C = 4214.256343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.214 3.786 4 H -0.040 1.040 5 C -0.587 4.587 6 H 0.038 0.962 7 C -0.031 4.031 8 N -0.937 5.937 9 Si 1.109 2.891 10 H -0.284 1.284 11 H -0.274 1.274 12 H -0.277 1.277 13 N -0.668 5.668 14 C 0.095 3.905 15 H 0.038 0.962 16 C -0.144 4.144 17 C -0.104 4.104 18 C -0.091 4.091 19 H 0.074 0.926 20 C -0.110 4.110 21 C -0.122 4.122 22 C -0.098 4.098 23 C -0.080 4.080 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.257 0.743 31 H 0.328 0.672 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 8.244 -11.381 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.106 3.894 4 H -0.023 1.023 5 C -0.625 4.625 6 H 0.057 0.943 7 C -0.229 4.229 8 N -0.576 5.576 9 Si 0.932 3.068 10 H -0.209 1.209 11 H -0.200 1.200 12 H -0.202 1.202 13 N -0.299 5.299 14 C -0.016 4.016 15 H 0.056 0.944 16 C -0.183 4.183 17 C -0.142 4.142 18 C -0.110 4.110 19 H 0.093 0.907 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.136 4.136 23 C -0.099 4.099 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.226 7.692 -10.644 14.534 hybrid contribution -1.739 0.402 0.167 1.793 sum -7.966 8.094 -10.476 15.450 Atomic orbital electron populations 1.21756 0.95373 1.01635 1.00965 1.21626 0.95140 0.98898 1.00280 1.19033 0.94321 0.90236 0.85845 1.02272 1.22273 0.92948 1.44623 1.02689 0.94331 1.27039 1.10272 0.93597 0.92018 1.70904 1.06966 1.47474 1.32226 0.83034 0.70354 0.77289 0.76164 1.20942 1.19952 1.20236 1.60592 1.35029 1.04154 1.30167 1.22004 0.95185 0.88087 0.96282 0.94395 1.22695 0.97716 0.98709 0.99197 1.21947 0.99976 0.95323 0.96965 1.21996 0.96406 0.96922 0.95645 0.90746 1.22230 0.99670 0.98529 0.94323 1.22382 1.00932 0.95301 0.97295 1.22225 0.98999 0.97027 0.95320 1.22430 0.98512 0.94756 0.94241 0.91813 0.91850 0.94311 0.91867 0.93358 0.94205 0.93243 0.85201 0.91714 0.94273 0.92029 0.89923 0.90774 0.90898 0.91572 0.90720 0.92908 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.64 71.98 0.69 -4.42 16 2 C -0.12 -5.66 5.22 30.60 0.16 -5.50 16 3 C 0.21 10.90 1.53 44.17 0.07 10.97 16 4 H -0.04 -2.26 7.16 -2.39 -0.02 -2.28 16 5 C -0.59 -33.98 8.28 25.60 0.21 -33.77 16 6 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 7 C -0.03 -1.84 5.19 84.66 0.44 -1.40 16 8 N -0.94 -57.71 12.82 21.45 0.27 -57.44 16 9 Si 1.11 52.12 29.91 68.60 2.05 54.18 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.67 -28.31 5.28 -470.03 -2.48 -30.79 16 14 C 0.10 3.68 2.71 45.56 0.12 3.80 16 15 H 0.04 1.78 7.57 -2.38 -0.02 1.77 16 16 C -0.14 -4.68 5.96 31.13 0.19 -4.50 16 17 C -0.10 -2.63 6.42 30.89 0.20 -2.43 16 18 C -0.09 -2.25 3.61 -10.04 -0.04 -2.28 16 19 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 20 C -0.11 -2.15 6.43 31.20 0.20 -1.94 16 21 C -0.12 -2.54 6.84 31.62 0.22 -2.32 16 22 C -0.10 -2.71 5.36 31.83 0.17 -2.54 16 23 C -0.08 -2.52 3.78 -9.32 -0.04 -2.56 16 24 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 2.02 6.68 -2.39 -0.02 2.00 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 2.11 6.26 -2.38 -0.01 2.09 16 30 H 0.26 15.99 6.19 -92.71 -0.57 15.42 16 31 H 0.33 12.36 4.65 -89.70 -0.42 11.94 16 32 H 0.06 1.99 7.51 -2.39 -0.02 1.97 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.73 7.06 -2.38 -0.02 1.72 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.28 7.07 -2.39 -0.02 1.27 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.06 1.65 6.30 -2.38 -0.02 1.64 16 Total: -1.00 -64.11 304.12 3.20 -60.90 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.76 Total: 22.04 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 2.60 Total: -48.89 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.21 Total: -88.22 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.18 kcal Total: -64.11 3.20 -60.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.519 kcal (2) G-P(sol) polarization free energy of solvation -64.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds