Wall clock time and date at job start Sun Mar 29 2020 21:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35038 * 126.39996 * 265.02615 * 3 2 1 5 5 N 1.30498 * 108.70178 * 180.02562 * 4 3 2 6 6 C 1.34129 * 109.25875 * 0.02562 * 5 4 3 7 7 C 1.34673 * 108.01592 * 359.73613 * 6 5 4 8 8 C 1.50701 * 126.59070 * 180.29019 * 7 6 5 9 9 N 1.46892 * 109.47749 * 95.15564 * 8 7 6 10 10 C 1.46904 * 111.00171 * 293.95685 * 9 8 7 11 11 C 1.46901 * 111.00026 * 169.99481 * 9 8 7 12 12 H 1.08994 * 109.47612 * 310.00743 * 11 9 8 13 13 C 1.53001 * 109.46588 * 70.00794 * 11 9 8 14 14 C 1.50703 * 109.47066 * 189.99949 * 11 9 8 15 15 H 1.08003 * 120.00088 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99986 * 180.02562 * 14 11 9 17 17 N 1.31519 * 120.00077 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99972 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47078 * 90.00436 * 18 16 14 20 20 H 1.48503 * 109.47046 * 210.00349 * 18 16 14 21 21 H 1.48498 * 109.47307 * 330.00190 * 18 16 14 22 22 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 1.07999 * 125.65195 * 359.96799 * 4 3 2 28 28 H 1.07996 * 125.99071 * 180.02562 * 6 5 4 29 29 H 1.09006 * 109.46492 * 215.16297 * 8 7 6 30 30 H 1.09003 * 109.46755 * 335.15198 * 8 7 6 31 31 H 1.08994 * 109.47163 * 59.99804 * 10 9 8 32 32 H 1.08995 * 109.46758 * 179.97438 * 10 9 8 33 33 H 1.08994 * 109.46592 * 299.99804 * 10 9 8 34 34 H 1.08997 * 109.47502 * 59.99273 * 13 11 9 35 35 H 1.08998 * 109.46872 * 179.97438 * 13 11 9 36 36 H 1.09005 * 109.47294 * 299.99291 * 13 11 9 37 37 H 0.96992 * 120.00353 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3742 2.1053 -1.0828 5 7 2.7566 3.2888 -0.6876 6 6 2.6601 3.3616 0.6483 7 6 2.1948 2.1803 1.0973 8 6 1.9230 1.8087 2.5323 9 7 0.5043 2.0366 2.8370 10 6 0.1764 3.4674 2.7785 11 6 0.1486 1.4679 4.1439 12 1 0.4985 0.4372 4.1992 13 6 0.8065 2.2901 5.2539 14 6 -1.3484 1.5001 4.3152 15 1 -1.9731 1.9024 3.5313 16 6 -1.9204 1.0161 5.4725 17 7 -1.1597 0.5267 6.4272 18 14 -3.7760 1.0553 5.6844 19 1 -4.3606 -0.2062 5.1628 20 1 -4.1067 1.1955 7.1253 21 1 -4.3357 2.2079 4.9337 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.3477 1.7617 -2.1063 28 1 2.9073 4.2190 1.2566 29 1 2.1636 0.7568 2.6869 30 1 2.5390 2.4226 3.1894 31 1 0.3844 3.8471 1.7782 32 1 -0.8799 3.6077 3.0076 33 1 0.7814 4.0087 3.5057 34 1 0.4566 3.3209 5.1986 35 1 0.5423 1.8685 6.2236 36 1 1.8893 2.2669 5.1301 37 1 -1.5621 0.1865 7.2415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658348082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:26 Heat of formation + Delta-G solvation = 65.491321 kcal Electronic energy + Delta-G solvation = -17544.742779 eV Core-core repulsion = 14937.391578 eV Total energy + Delta-G solvation = -2607.351201 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.79126 -37.17299 -34.66040 -32.94397 -30.56972 -29.59584 -28.15976 -26.39594 -25.25380 -23.61173 -23.26335 -21.07294 -19.82283 -18.86043 -16.86262 -16.12853 -15.46622 -14.84361 -14.74075 -14.11089 -13.84634 -13.58584 -13.39641 -13.04533 -12.57867 -12.46551 -12.21955 -11.82837 -11.52440 -11.14114 -11.06532 -10.96122 -10.80188 -10.69577 -10.54037 -10.07629 -9.96881 -9.58058 -9.26265 -8.94992 -8.42404 -8.03124 -7.20659 -6.05088 -4.08896 2.36610 3.09569 3.27920 3.34843 3.38332 3.46788 4.38433 4.81251 4.93417 5.02410 5.14524 5.22237 5.27330 5.35099 5.64620 5.73320 5.88609 5.90374 6.07805 6.15474 6.27815 6.38693 6.60566 6.64953 6.74752 6.82003 6.88992 7.06276 7.08134 7.40241 7.51621 7.67986 7.79563 8.06262 8.32487 8.38370 8.53062 8.97267 9.56470 11.01837 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032921 B = 0.006858 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.321194 B = 4081.990467 C = 4419.422262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 N -0.445 5.445 4 C 0.164 3.836 5 N -0.499 5.499 6 C -0.039 4.039 7 C 0.012 3.988 8 C 0.122 3.878 9 N -0.529 5.529 10 C 0.035 3.965 11 C 0.212 3.788 12 H 0.037 0.963 13 C -0.173 4.173 14 C -0.497 4.497 15 H 0.062 0.938 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.096 0.904 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.197 0.803 28 H 0.161 0.839 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.018 0.982 34 H 0.033 0.967 35 H 0.088 0.912 36 H 0.006 0.994 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 -0.871 -9.874 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.128 5.128 4 C -0.118 4.118 5 N -0.217 5.217 6 C -0.187 4.187 7 C -0.104 4.104 8 C -0.007 4.007 9 N -0.253 5.253 10 C -0.114 4.114 11 C 0.106 3.894 12 H 0.055 0.945 13 C -0.232 4.232 14 C -0.536 4.536 15 H 0.080 0.920 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.214 0.786 28 H 0.179 0.821 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.025 0.975 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.226 -0.727 -10.561 11.805 hybrid contribution -0.813 -0.285 1.313 1.570 sum 4.413 -1.012 -9.248 10.297 Atomic orbital electron populations 1.22208 0.93323 1.02939 1.04713 1.21774 0.96588 0.79647 1.03528 1.45428 1.47813 1.12684 1.06864 1.24705 1.04919 0.88755 0.93388 1.70189 1.20968 1.18403 1.12144 1.21942 1.08245 0.97400 0.91113 1.21379 1.06087 0.92620 0.90359 1.20422 0.92206 1.00670 0.87400 1.62358 1.13808 1.14626 1.34459 1.22234 1.01733 0.88682 0.98732 1.19320 0.95590 0.93509 0.80972 0.94542 1.22415 0.95395 1.00064 1.05376 1.21080 0.90877 1.40007 1.01647 0.92002 1.24916 0.98074 0.95387 0.95860 1.69879 1.34664 1.41691 1.07175 0.86537 0.85583 0.78401 0.77108 1.20746 1.21360 1.19960 0.88546 0.92840 0.91309 0.89350 0.89809 0.78625 0.82131 0.91078 0.93203 0.93524 0.91021 0.96349 0.94829 0.89344 0.97454 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.27 6.66 -4.04 -0.03 1.24 16 3 N -0.44 -6.45 2.75 -113.99 -0.31 -6.76 16 4 C 0.16 2.33 12.56 -90.38 -1.13 1.19 16 5 N -0.50 -8.42 11.25 -14.67 -0.17 -8.58 16 6 C -0.04 -0.65 10.80 -17.81 -0.19 -0.84 16 7 C 0.01 0.19 5.68 -81.60 -0.46 -0.27 16 8 C 0.12 2.15 4.79 -4.98 -0.02 2.13 16 9 N -0.53 -10.69 4.14 -237.74 -0.98 -11.68 16 10 C 0.03 0.68 8.45 60.07 0.51 1.19 16 11 C 0.21 5.04 2.31 -68.86 -0.16 4.88 16 12 H 0.04 0.95 7.93 -51.93 -0.41 0.54 16 13 C -0.17 -4.03 8.22 37.16 0.31 -3.73 16 14 C -0.50 -13.07 7.91 -34.44 -0.27 -13.35 16 15 H 0.06 1.65 7.12 -52.48 -0.37 1.27 16 16 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 17 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H 0.10 1.64 7.58 -51.93 -0.39 1.25 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 1.06 7.47 -51.93 -0.39 0.68 16 26 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.20 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 29 H 0.07 1.23 7.27 -51.93 -0.38 0.85 16 30 H 0.05 0.88 7.06 -51.93 -0.37 0.51 16 31 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 32 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 33 H 0.02 0.35 6.46 -51.93 -0.34 0.01 16 34 H 0.03 0.76 6.42 -51.93 -0.33 0.43 16 35 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 36 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 295.69 15.07 4.46 4.46 Total: -1.00 -28.94 295.69 -8.17 -37.11 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.59 Total: 1.67 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.17 Total: -7.97 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.84 Total: -51.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.94 -8.17 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658348082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.600 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds