Wall clock time and date at job start Sun Mar 29 2020 21:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35038 * 126.39996 * 265.02615 * 3 2 1 5 5 N 1.30498 * 108.70178 * 180.02562 * 4 3 2 6 6 C 1.34129 * 109.25875 * 0.02562 * 5 4 3 7 7 C 1.34673 * 108.01592 * 359.73613 * 6 5 4 8 8 C 1.50701 * 126.59070 * 180.29019 * 7 6 5 9 9 N 1.46892 * 109.47749 * 95.15564 * 8 7 6 10 10 C 1.46904 * 111.00171 * 293.95685 * 9 8 7 11 11 C 1.46901 * 111.00026 * 169.99481 * 9 8 7 12 12 H 1.08994 * 109.47612 * 310.00743 * 11 9 8 13 13 C 1.53001 * 109.46588 * 70.00794 * 11 9 8 14 14 C 1.50703 * 109.47066 * 189.99949 * 11 9 8 15 15 H 1.08003 * 120.00088 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99986 * 180.02562 * 14 11 9 17 17 N 1.31519 * 120.00077 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99972 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47078 * 90.00436 * 18 16 14 20 20 H 1.48503 * 109.47046 * 210.00349 * 18 16 14 21 21 H 1.48498 * 109.47307 * 330.00190 * 18 16 14 22 22 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 1.07999 * 125.65195 * 359.96799 * 4 3 2 28 28 H 1.07996 * 125.99071 * 180.02562 * 6 5 4 29 29 H 1.09006 * 109.46492 * 215.16297 * 8 7 6 30 30 H 1.09003 * 109.46755 * 335.15198 * 8 7 6 31 31 H 1.08994 * 109.47163 * 59.99804 * 10 9 8 32 32 H 1.08995 * 109.46758 * 179.97438 * 10 9 8 33 33 H 1.08994 * 109.46592 * 299.99804 * 10 9 8 34 34 H 1.08997 * 109.47502 * 59.99273 * 13 11 9 35 35 H 1.08998 * 109.46872 * 179.97438 * 13 11 9 36 36 H 1.09005 * 109.47294 * 299.99291 * 13 11 9 37 37 H 0.96992 * 120.00353 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3742 2.1053 -1.0828 5 7 2.7566 3.2888 -0.6876 6 6 2.6601 3.3616 0.6483 7 6 2.1948 2.1803 1.0973 8 6 1.9230 1.8087 2.5323 9 7 0.5043 2.0366 2.8370 10 6 0.1764 3.4674 2.7785 11 6 0.1486 1.4679 4.1439 12 1 0.4985 0.4372 4.1992 13 6 0.8065 2.2901 5.2539 14 6 -1.3484 1.5001 4.3152 15 1 -1.9731 1.9024 3.5313 16 6 -1.9204 1.0161 5.4725 17 7 -1.1597 0.5267 6.4272 18 14 -3.7760 1.0553 5.6844 19 1 -4.3606 -0.2062 5.1628 20 1 -4.1067 1.1955 7.1253 21 1 -4.3357 2.2079 4.9337 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.3477 1.7617 -2.1063 28 1 2.9073 4.2190 1.2566 29 1 2.1636 0.7568 2.6869 30 1 2.5390 2.4226 3.1894 31 1 0.3844 3.8471 1.7782 32 1 -0.8799 3.6077 3.0076 33 1 0.7814 4.0087 3.5057 34 1 0.4566 3.3209 5.1986 35 1 0.5423 1.8685 6.2236 36 1 1.8893 2.2669 5.1301 37 1 -1.5621 0.1865 7.2415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658348082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:26 Heat of formation + Delta-G solvation = 49.105009 kcal Electronic energy + Delta-G solvation = -17545.453343 eV Core-core repulsion = 14937.391578 eV Total energy + Delta-G solvation = -2608.061765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.96855 -38.87168 -35.74163 -34.86271 -32.09930 -30.75769 -29.82792 -27.89044 -27.24262 -25.05320 -24.48918 -22.23917 -21.46463 -20.23908 -18.29262 -17.83725 -17.05704 -16.39174 -16.07766 -15.63236 -15.31661 -14.97351 -14.73197 -14.28570 -14.21843 -13.91059 -13.51647 -13.31526 -12.94150 -12.87447 -12.73565 -12.59670 -12.44872 -12.29789 -12.06054 -11.99037 -11.76785 -10.97838 -10.79702 -10.47518 -10.41462 -9.29538 -8.83837 -8.09479 -6.19546 1.16566 1.42143 1.44025 1.53305 2.02318 2.25456 2.44075 3.19918 3.49971 3.80939 3.91266 3.96415 4.23469 4.28106 4.44376 4.46564 4.59175 4.65547 4.75510 4.78242 4.85111 4.91617 4.93620 5.03198 5.15842 5.19733 5.47585 5.51834 5.57591 5.72263 5.79916 5.84917 6.20407 6.42740 6.48905 6.70752 6.93333 7.19727 7.49572 8.96149 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032921 B = 0.006858 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.321194 B = 4081.990467 C = 4419.422262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.446 5.446 4 C 0.180 3.820 5 N -0.532 5.532 6 C -0.047 4.047 7 C -0.005 4.005 8 C 0.130 3.870 9 N -0.530 5.530 10 C 0.045 3.955 11 C 0.220 3.780 12 H 0.011 0.989 13 C -0.161 4.161 14 C -0.509 4.509 15 H 0.053 0.947 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.954 3.046 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.239 0.761 28 H 0.165 0.835 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.026 0.974 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -1.233 -11.544 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.016 4.016 3 N -0.128 5.128 4 C -0.102 4.102 5 N -0.250 5.250 6 C -0.195 4.195 7 C -0.121 4.121 8 C 0.001 3.999 9 N -0.254 5.254 10 C -0.103 4.103 11 C 0.113 3.887 12 H 0.029 0.971 13 C -0.220 4.220 14 C -0.548 4.548 15 H 0.071 0.929 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.780 3.220 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.144 0.856 27 H 0.255 0.745 28 H 0.182 0.818 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.307 -1.092 -12.237 13.383 hybrid contribution -0.800 -0.191 1.746 1.931 sum 4.506 -1.284 -10.491 11.490 Atomic orbital electron populations 1.22112 0.94275 1.03428 1.02743 1.21989 0.95655 0.78547 1.05419 1.45610 1.47411 1.13472 1.06345 1.25534 1.02226 0.87765 0.94718 1.70202 1.22685 1.20092 1.12049 1.22105 1.08192 0.97649 0.91543 1.21114 1.07555 0.93261 0.90216 1.20304 0.90286 1.00663 0.88609 1.62235 1.15964 1.14884 1.32267 1.22109 1.00493 0.88314 0.99392 1.19047 0.94405 0.92443 0.82814 0.97116 1.22235 0.96577 0.99539 1.03686 1.21315 0.92260 1.39754 1.01425 0.92883 1.25602 1.01926 0.95192 0.95685 1.69995 1.36138 1.42341 1.07491 0.85624 0.80982 0.78435 0.76968 1.20251 1.21117 1.19692 0.92896 0.92237 0.89676 0.89841 0.85576 0.74515 0.81794 0.91133 0.93167 0.92402 0.92924 0.96035 0.94881 0.92010 0.95520 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 10.24 71.98 0.74 -3.33 16 2 C 0.11 2.21 6.66 86.38 0.58 2.78 16 3 N -0.45 -11.89 2.75 -514.56 -1.42 -13.30 16 4 C 0.18 4.53 12.56 180.26 2.26 6.80 16 5 N -0.53 -16.87 11.25 -200.32 -2.25 -19.13 16 6 C -0.05 -1.51 10.80 83.52 0.90 -0.61 16 7 C 0.00 -0.16 5.68 40.95 0.23 0.08 16 8 C 0.13 4.53 4.79 85.56 0.41 4.94 16 9 N -0.53 -21.52 4.14 -906.06 -3.75 -25.27 16 10 C 0.05 1.77 8.45 127.69 1.08 2.85 16 11 C 0.22 10.61 2.31 44.17 0.10 10.71 16 12 H 0.01 0.58 7.93 -2.39 -0.02 0.56 16 13 C -0.16 -7.56 8.22 71.98 0.59 -6.96 16 14 C -0.51 -27.11 7.91 25.60 0.20 -26.91 16 15 H 0.05 2.87 7.12 -2.91 -0.02 2.85 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -51.51 11.32 21.45 0.24 -51.26 16 18 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H 0.05 1.78 7.58 -2.39 -0.02 1.76 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.08 1.86 7.47 -2.39 -0.02 1.84 16 26 H 0.13 1.63 8.13 -2.39 -0.02 1.61 16 27 H 0.24 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.16 4.96 8.06 -2.91 -0.02 4.93 16 29 H 0.07 2.43 7.27 -2.38 -0.02 2.41 16 30 H 0.05 1.73 7.06 -2.39 -0.02 1.72 16 31 H 0.06 2.11 6.56 -2.39 -0.02 2.10 16 32 H 0.05 2.23 6.76 -2.39 -0.02 2.22 16 33 H 0.02 0.81 6.46 -2.39 -0.02 0.80 16 34 H 0.03 1.51 6.42 -2.39 -0.02 1.49 16 35 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 36 H 0.03 1.10 6.91 -2.38 -0.02 1.08 16 37 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -62.14 295.69 3.43 -58.71 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.04 Total: 13.66 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 7.54 Total: -8.44 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -7.18 Total: -108.96 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -62.14 3.43 -58.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658348082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.814 kcal (2) G-P(sol) polarization free energy of solvation -62.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds