Wall clock time and date at job start Sun Mar 29 2020 21:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47455 * 2 1 4 4 C 1.35037 * 126.39812 * 266.61149 * 3 2 1 5 5 N 1.30496 * 108.70264 * 179.97438 * 4 3 2 6 6 C 1.34131 * 109.25776 * 359.97438 * 5 4 3 7 7 C 1.34668 * 108.01425 * 359.72890 * 6 5 4 8 8 C 1.50702 * 126.58987 * 180.28186 * 7 6 5 9 9 N 1.46903 * 109.47107 * 264.95098 * 8 7 6 10 10 C 1.46902 * 110.99929 * 72.22604 * 9 8 7 11 11 C 1.46900 * 110.99935 * 196.17882 * 9 8 7 12 12 H 1.08997 * 109.47307 * 54.99772 * 11 9 8 13 13 C 1.53004 * 109.47100 * 295.00146 * 11 9 8 14 14 C 1.50696 * 109.47208 * 175.00575 * 11 9 8 15 15 H 1.08003 * 119.99840 * 359.97438 * 14 11 9 16 16 C 1.37877 * 120.00024 * 180.02562 * 14 11 9 17 17 N 1.31508 * 119.99928 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00067 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46930 * 89.99155 * 18 16 14 20 20 H 1.48498 * 109.47259 * 209.99475 * 18 16 14 21 21 H 1.48501 * 109.46996 * 329.99770 * 18 16 14 22 22 H 1.08996 * 109.47420 * 56.72449 * 1 2 3 23 23 H 1.09004 * 109.46824 * 176.72665 * 1 2 3 24 24 H 1.09003 * 109.47207 * 296.71897 * 1 2 3 25 25 H 1.09004 * 109.47384 * 119.99893 * 2 1 3 26 26 H 1.09000 * 109.47065 * 239.99866 * 2 1 3 27 27 H 1.08007 * 125.65145 * 0.02821 * 4 3 2 28 28 H 1.07994 * 125.98899 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.46631 * 24.95043 * 8 7 6 30 30 H 1.08994 * 109.46995 * 144.95009 * 8 7 6 31 31 H 1.09000 * 109.47130 * 57.39311 * 10 9 8 32 32 H 1.08998 * 109.46823 * 177.39132 * 10 9 8 33 33 H 1.09000 * 109.47156 * 297.39738 * 10 9 8 34 34 H 1.09001 * 109.47558 * 59.99860 * 13 11 9 35 35 H 1.08997 * 109.47315 * 180.02562 * 13 11 9 36 36 H 1.09010 * 109.47036 * 300.00130 * 13 11 9 37 37 H 0.97007 * 120.00167 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3461 2.1152 -1.0850 5 7 2.7380 3.2953 -0.6891 6 6 2.6746 3.3565 0.6493 7 6 2.2207 2.1712 1.0994 8 6 1.9848 1.7869 2.5374 9 7 3.1678 1.0888 3.0581 10 6 4.2834 2.0228 3.2609 11 6 2.8509 0.3698 4.2992 12 1 2.0096 -0.3012 4.1258 13 6 2.4838 1.3759 5.3920 14 6 4.0504 -0.4309 4.7362 15 1 4.9574 -0.4083 4.1502 16 6 3.9898 -1.1932 5.8835 17 7 2.8852 -1.2212 6.5967 18 14 5.4764 -2.1863 6.4247 19 1 6.3267 -1.3581 7.3172 20 1 5.0236 -3.3969 7.1558 21 1 6.2610 -2.5932 5.2314 22 1 -0.3634 0.5638 -0.8591 23 1 -0.3633 -1.0260 -0.0587 24 1 -0.3634 0.4621 0.9179 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.2920 1.7813 -2.1108 28 1 2.9373 4.2084 1.2588 29 1 1.8033 2.6847 3.1282 30 1 1.1179 1.1293 2.6002 31 1 3.9732 2.8173 3.9396 32 1 5.1310 1.4886 3.6901 33 1 4.5736 2.4555 2.3035 34 1 1.6162 1.9551 5.0760 35 1 2.2491 0.8424 6.3131 36 1 3.3252 2.0470 5.5655 37 1 2.8426 -1.7572 7.4041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658348083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:28 Heat of formation + Delta-G solvation = 64.227469 kcal Electronic energy + Delta-G solvation = -17404.418395 eV Core-core repulsion = 14797.012390 eV Total energy + Delta-G solvation = -2607.406005 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.77373 -37.17631 -34.72982 -32.93867 -30.55946 -29.72010 -28.23643 -26.38528 -25.19130 -23.75468 -23.22696 -21.06045 -19.83366 -18.96173 -16.78928 -16.14266 -15.50088 -14.99876 -14.54037 -14.18076 -13.96188 -13.65535 -13.39955 -13.12287 -12.61001 -12.48418 -12.28399 -11.98906 -11.50036 -11.29692 -11.10495 -11.06792 -10.81651 -10.72274 -10.55513 -10.05560 -9.97484 -9.56452 -9.26572 -8.93061 -8.44028 -8.01703 -7.22389 -6.06018 -4.09924 2.37982 3.08891 3.27636 3.34537 3.38423 3.48153 4.38103 4.78753 4.93186 5.00248 5.03704 5.16371 5.26546 5.34059 5.56884 5.66482 5.74195 5.76893 5.98149 6.10542 6.18127 6.28718 6.39596 6.63621 6.74572 6.81408 6.89630 7.06195 7.08503 7.41864 7.52491 7.67616 7.78064 8.04228 8.32343 8.39273 8.53015 8.96213 9.55481 11.00928 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031536 B = 0.006484 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.662375 B = 4317.228642 C = 4532.835806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.444 5.444 4 C 0.164 3.836 5 N -0.499 5.499 6 C -0.039 4.039 7 C 0.014 3.986 8 C 0.123 3.877 9 N -0.532 5.532 10 C 0.035 3.965 11 C 0.212 3.788 12 H 0.037 0.963 13 C -0.173 4.173 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.197 0.803 28 H 0.161 0.839 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.007 0.993 35 H 0.088 0.912 36 H 0.031 0.969 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 2.806 -10.350 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.024 4.024 3 N -0.127 5.127 4 C -0.118 4.118 5 N -0.217 5.217 6 C -0.188 4.188 7 C -0.102 4.102 8 C -0.007 4.007 9 N -0.256 5.256 10 C -0.113 4.113 11 C 0.106 3.894 12 H 0.055 0.945 13 C -0.232 4.232 14 C -0.539 4.539 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.123 0.877 26 H 0.107 0.893 27 H 0.214 0.786 28 H 0.179 0.821 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.881 2.836 -11.049 12.049 hybrid contribution 0.245 -0.640 1.491 1.641 sum -3.636 2.196 -9.557 10.459 Atomic orbital electron populations 1.22139 0.94534 1.02918 1.02835 1.21870 0.95108 0.80180 1.05290 1.45368 1.48318 1.12348 1.06669 1.24706 1.05034 0.88664 0.93381 1.70186 1.20331 1.19023 1.12183 1.21932 1.07954 0.97831 0.91034 1.21407 1.06699 0.92031 0.90098 1.20421 0.95107 0.98063 0.87092 1.62323 1.04323 1.26230 1.32714 1.22240 0.95645 0.94731 0.98696 1.19335 0.97002 0.90772 0.82302 0.94482 1.22422 0.96948 0.99147 1.04721 1.21109 0.98722 1.26252 1.07839 0.91926 1.24916 0.96082 0.96743 0.96460 1.69879 1.26223 1.40908 1.16346 0.86533 0.82807 0.79599 0.78691 1.20758 1.21283 1.19886 0.92324 0.90679 0.91805 0.87695 0.89333 0.78626 0.82143 0.93108 0.91050 0.96502 0.90698 0.93615 0.97403 0.89334 0.94960 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.10 1.17 6.62 -4.04 -0.03 1.14 16 3 N -0.44 -6.51 2.75 -113.99 -0.31 -6.82 16 4 C 0.16 2.34 12.56 -90.38 -1.14 1.21 16 5 N -0.50 -8.48 11.25 -14.67 -0.17 -8.65 16 6 C -0.04 -0.67 11.03 -17.81 -0.20 -0.86 16 7 C 0.01 0.23 5.89 -81.60 -0.48 -0.25 16 8 C 0.12 2.18 4.37 -4.97 -0.02 2.16 16 9 N -0.53 -11.03 4.69 -237.73 -1.11 -12.15 16 10 C 0.04 0.70 8.55 60.07 0.51 1.22 16 11 C 0.21 5.09 2.32 -68.86 -0.16 4.93 16 12 H 0.04 0.97 7.98 -51.93 -0.41 0.56 16 13 C -0.17 -4.05 8.29 37.16 0.31 -3.74 16 14 C -0.50 -13.29 7.85 -34.44 -0.27 -13.56 16 15 H 0.06 1.69 6.79 -52.48 -0.36 1.33 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 17 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.74 7.91 -51.93 -0.41 0.33 16 25 H 0.10 1.49 7.99 -51.93 -0.41 1.07 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.20 2.00 8.06 -52.48 -0.42 1.57 16 28 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 29 H 0.05 0.90 7.15 -51.93 -0.37 0.53 16 30 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 31 H 0.02 0.32 6.58 -51.93 -0.34 -0.02 16 32 H 0.07 1.60 6.35 -51.93 -0.33 1.27 16 33 H 0.05 0.85 6.96 -51.93 -0.36 0.49 16 34 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 35 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 36 H 0.03 0.74 6.54 -51.92 -0.34 0.40 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -29.45 297.53 -8.34 -37.79 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.66 Total: 1.14 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.18 Total: -7.57 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.97 Total: -51.79 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.45 -8.34 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658348083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.014 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds