Wall clock time and date at job start Sun Mar 29 2020 21:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47455 * 2 1 4 4 C 1.35037 * 126.39812 * 266.61149 * 3 2 1 5 5 N 1.30496 * 108.70264 * 179.97438 * 4 3 2 6 6 C 1.34131 * 109.25776 * 359.97438 * 5 4 3 7 7 C 1.34668 * 108.01425 * 359.72890 * 6 5 4 8 8 C 1.50702 * 126.58987 * 180.28186 * 7 6 5 9 9 N 1.46903 * 109.47107 * 264.95098 * 8 7 6 10 10 C 1.46902 * 110.99929 * 72.22604 * 9 8 7 11 11 C 1.46900 * 110.99935 * 196.17882 * 9 8 7 12 12 H 1.08997 * 109.47307 * 54.99772 * 11 9 8 13 13 C 1.53004 * 109.47100 * 295.00146 * 11 9 8 14 14 C 1.50696 * 109.47208 * 175.00575 * 11 9 8 15 15 H 1.08003 * 119.99840 * 359.97438 * 14 11 9 16 16 C 1.37877 * 120.00024 * 180.02562 * 14 11 9 17 17 N 1.31508 * 119.99928 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00067 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46930 * 89.99155 * 18 16 14 20 20 H 1.48498 * 109.47259 * 209.99475 * 18 16 14 21 21 H 1.48501 * 109.46996 * 329.99770 * 18 16 14 22 22 H 1.08996 * 109.47420 * 56.72449 * 1 2 3 23 23 H 1.09004 * 109.46824 * 176.72665 * 1 2 3 24 24 H 1.09003 * 109.47207 * 296.71897 * 1 2 3 25 25 H 1.09004 * 109.47384 * 119.99893 * 2 1 3 26 26 H 1.09000 * 109.47065 * 239.99866 * 2 1 3 27 27 H 1.08007 * 125.65145 * 0.02821 * 4 3 2 28 28 H 1.07994 * 125.98899 * 179.97438 * 6 5 4 29 29 H 1.09001 * 109.46631 * 24.95043 * 8 7 6 30 30 H 1.08994 * 109.46995 * 144.95009 * 8 7 6 31 31 H 1.09000 * 109.47130 * 57.39311 * 10 9 8 32 32 H 1.08998 * 109.46823 * 177.39132 * 10 9 8 33 33 H 1.09000 * 109.47156 * 297.39738 * 10 9 8 34 34 H 1.09001 * 109.47558 * 59.99860 * 13 11 9 35 35 H 1.08997 * 109.47315 * 180.02562 * 13 11 9 36 36 H 1.09010 * 109.47036 * 300.00130 * 13 11 9 37 37 H 0.97007 * 120.00167 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3461 2.1152 -1.0850 5 7 2.7380 3.2953 -0.6891 6 6 2.6746 3.3565 0.6493 7 6 2.2207 2.1712 1.0994 8 6 1.9848 1.7869 2.5374 9 7 3.1678 1.0888 3.0581 10 6 4.2834 2.0228 3.2609 11 6 2.8509 0.3698 4.2992 12 1 2.0096 -0.3012 4.1258 13 6 2.4838 1.3759 5.3920 14 6 4.0504 -0.4309 4.7362 15 1 4.9574 -0.4083 4.1502 16 6 3.9898 -1.1932 5.8835 17 7 2.8852 -1.2212 6.5967 18 14 5.4764 -2.1863 6.4247 19 1 6.3267 -1.3581 7.3172 20 1 5.0236 -3.3969 7.1558 21 1 6.2610 -2.5932 5.2314 22 1 -0.3634 0.5638 -0.8591 23 1 -0.3633 -1.0260 -0.0587 24 1 -0.3634 0.4621 0.9179 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.2920 1.7813 -2.1108 28 1 2.9373 4.2084 1.2588 29 1 1.8033 2.6847 3.1282 30 1 1.1179 1.1293 2.6002 31 1 3.9732 2.8173 3.9396 32 1 5.1310 1.4886 3.6901 33 1 4.5736 2.4555 2.3035 34 1 1.6162 1.9551 5.0760 35 1 2.2491 0.8424 6.3131 36 1 3.3252 2.0470 5.5655 37 1 2.8426 -1.7572 7.4041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658348083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:27 Heat of formation + Delta-G solvation = 47.145654 kcal Electronic energy + Delta-G solvation = -17405.159118 eV Core-core repulsion = 14797.012390 eV Total energy + Delta-G solvation = -2608.146729 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.96294 -38.89358 -35.78019 -34.86810 -32.08588 -30.80152 -29.93353 -27.92241 -27.15262 -25.12995 -24.46662 -22.23988 -21.47529 -20.35337 -18.28301 -17.78563 -17.11934 -16.47541 -15.86713 -15.71668 -15.40508 -15.06298 -14.73643 -14.30539 -14.25813 -13.88559 -13.51742 -13.34202 -12.99457 -12.88141 -12.73076 -12.64576 -12.53231 -12.29914 -12.17254 -11.99966 -11.77375 -10.96550 -10.79744 -10.49711 -10.41576 -9.29566 -8.88341 -8.11019 -6.21435 1.16949 1.41969 1.43728 1.53402 2.00663 2.25534 2.43408 3.18457 3.48652 3.81628 3.88305 3.95125 4.15664 4.26446 4.41574 4.50618 4.57969 4.65047 4.69119 4.75973 4.80982 4.89152 4.89987 5.02479 5.14741 5.19455 5.21892 5.51983 5.55070 5.70972 5.78153 5.84606 6.16892 6.41959 6.47124 6.69699 6.91687 7.19316 7.47796 8.94760 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031536 B = 0.006484 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.662375 B = 4317.228642 C = 4532.835806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.096 3.904 3 N -0.446 5.446 4 C 0.179 3.821 5 N -0.531 5.531 6 C -0.047 4.047 7 C -0.005 4.005 8 C 0.132 3.868 9 N -0.538 5.538 10 C 0.045 3.955 11 C 0.219 3.781 12 H 0.011 0.989 13 C -0.160 4.160 14 C -0.515 4.515 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.919 5.919 18 Si 0.955 3.045 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.271 1.271 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.239 0.761 28 H 0.166 0.834 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.027 0.973 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 2.600 -11.856 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.128 5.128 4 C -0.103 4.103 5 N -0.250 5.250 6 C -0.195 4.195 7 C -0.121 4.121 8 C 0.003 3.997 9 N -0.261 5.261 10 C -0.104 4.104 11 C 0.112 3.888 12 H 0.029 0.971 13 C -0.220 4.220 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.559 5.559 18 Si 0.781 3.219 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.196 1.196 22 H 0.089 0.911 23 H 0.112 0.888 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.139 0.861 27 H 0.255 0.745 28 H 0.183 0.817 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.752 2.629 -12.560 13.369 hybrid contribution 0.171 -0.568 1.871 1.963 sum -3.581 2.062 -10.689 11.460 Atomic orbital electron populations 1.22088 0.93120 1.04148 1.02294 1.22044 0.96238 0.78805 1.05507 1.45572 1.47920 1.13112 1.06203 1.25533 1.02341 0.87689 0.94727 1.70201 1.22032 1.20687 1.12075 1.22113 1.07789 0.98105 0.91479 1.21155 1.08380 0.92663 0.89932 1.20293 0.93722 0.97610 0.88090 1.62210 1.05742 1.27230 1.30946 1.22133 0.94667 0.94262 0.99307 1.19069 0.95182 0.90738 0.83793 0.97107 1.22235 0.97664 0.98811 1.03259 1.21355 0.99186 1.26808 1.07951 0.92738 1.25617 0.98477 0.97711 0.96576 1.69996 1.27747 1.41500 1.16622 0.85603 0.79806 0.78261 0.78221 1.20341 1.20911 1.19620 0.91124 0.88785 0.93786 0.90427 0.86136 0.74513 0.81677 0.92917 0.91306 0.96052 0.92537 0.92337 0.95420 0.91959 0.95004 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.24 71.98 0.74 -2.17 16 2 C 0.10 2.09 6.62 86.38 0.57 2.66 16 3 N -0.45 -12.20 2.75 -514.56 -1.42 -13.61 16 4 C 0.18 4.60 12.56 180.27 2.26 6.87 16 5 N -0.53 -17.04 11.25 -200.32 -2.25 -19.29 16 6 C -0.05 -1.53 11.03 83.52 0.92 -0.61 16 7 C 0.00 -0.15 5.89 40.95 0.24 0.09 16 8 C 0.13 4.66 4.37 85.56 0.37 5.03 16 9 N -0.54 -22.31 4.69 -906.04 -4.25 -26.55 16 10 C 0.04 1.76 8.55 127.69 1.09 2.85 16 11 C 0.22 10.68 2.32 44.17 0.10 10.79 16 12 H 0.01 0.59 7.98 -2.39 -0.02 0.57 16 13 C -0.16 -7.54 8.29 71.98 0.60 -6.95 16 14 C -0.51 -27.60 7.85 25.60 0.20 -27.40 16 15 H 0.05 2.96 6.79 -2.91 -0.02 2.94 16 16 C 0.01 0.80 5.30 84.66 0.45 1.25 16 17 N -0.92 -51.50 11.32 21.45 0.24 -51.26 16 18 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.04 0.98 7.91 -2.39 -0.02 0.96 16 25 H 0.08 2.16 7.99 -2.39 -0.02 2.14 16 26 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.24 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.17 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.05 1.83 7.15 -2.39 -0.02 1.81 16 30 H 0.07 2.43 7.58 -2.39 -0.02 2.42 16 31 H 0.02 0.80 6.58 -2.39 -0.02 0.79 16 32 H 0.06 2.41 6.35 -2.39 -0.02 2.40 16 33 H 0.06 2.14 6.96 -2.39 -0.02 2.12 16 34 H 0.03 1.14 6.91 -2.39 -0.02 1.13 16 35 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 36 H 0.03 1.45 6.54 -2.38 -0.02 1.44 16 37 H 0.26 13.99 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -62.68 297.53 2.94 -59.74 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.04 Total: 13.51 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 7.55 Total: -7.58 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -7.67 Total: -110.71 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.68 2.94 -59.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658348083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.881 kcal (2) G-P(sol) polarization free energy of solvation -62.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds