Wall clock time and date at job start Sun Mar 29 2020 21:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35040 * 126.39897 * 264.69060 * 3 2 1 5 5 N 1.30502 * 108.70202 * 179.82812 * 4 3 2 6 6 C 1.34132 * 109.25419 * 0.43978 * 5 4 3 7 7 C 1.34670 * 108.01924 * 359.73084 * 6 5 4 8 8 C 1.50705 * 126.59354 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46999 * 94.95236 * 8 7 6 10 10 C 1.46896 * 110.99834 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47024 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47034 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47055 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99922 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99760 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00185 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99711 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47294 * 90.00228 * 17 15 13 19 19 H 1.48496 * 109.47114 * 210.00068 * 17 15 13 20 20 H 1.48502 * 109.46873 * 330.00002 * 17 15 13 21 21 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 26 26 H 1.07999 * 125.65023 * 359.97438 * 4 3 2 27 27 H 1.08005 * 125.99084 * 179.72252 * 6 5 4 28 28 H 1.08993 * 109.47178 * 214.95737 * 8 7 6 29 29 H 1.09003 * 109.46653 * 334.96143 * 8 7 6 30 30 H 1.00906 * 111.00065 * 303.95650 * 9 8 7 31 31 H 1.08998 * 109.47599 * 300.00258 * 10 9 8 32 32 H 1.09007 * 109.46940 * 60.00271 * 10 9 8 33 33 H 1.08992 * 109.47144 * 300.00118 * 11 10 9 34 34 H 1.08999 * 109.46784 * 60.00104 * 11 10 9 35 35 H 1.09005 * 109.46930 * 300.00192 * 12 11 10 36 36 H 1.08994 * 109.47346 * 59.99761 * 12 11 10 37 37 H 0.97007 * 120.00052 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3802 2.1032 -1.0823 5 7 2.7564 3.2889 -0.6876 6 6 2.6584 3.3622 0.6481 7 6 2.1985 2.1790 1.0976 8 6 1.9326 1.8052 2.5332 9 7 0.5150 2.0328 2.8439 10 6 0.2184 1.6791 4.2385 11 6 -1.2638 1.9296 4.5240 12 6 -1.5725 1.5618 5.9766 13 6 -3.0325 1.8079 6.2577 14 1 -3.6756 2.1890 5.4783 15 6 -3.5471 1.5466 7.5099 16 7 -2.7640 1.0820 8.4588 17 14 -5.3566 1.8524 7.8584 18 1 -6.1336 0.6238 7.5553 19 1 -5.5318 2.2083 9.2894 20 1 -5.8429 2.9682 7.0077 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.3592 1.7576 -2.1053 27 1 2.9052 4.2198 1.2565 28 1 2.1737 0.7532 2.6853 29 1 2.5512 2.4183 3.1887 30 1 0.2508 2.9870 2.6491 31 1 0.4476 0.6262 4.4029 32 1 0.8251 2.2915 4.9056 33 1 -1.4925 2.9825 4.3597 34 1 -1.8707 1.3175 3.8569 35 1 -1.3436 0.5088 6.1413 36 1 -0.9655 2.1741 6.6434 37 1 -3.1260 0.8985 9.3399 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661354665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:24 Heat of formation + Delta-G solvation = 40.947825 kcal Electronic energy + Delta-G solvation = -16290.149123 eV Core-core repulsion = 13681.733636 eV Total energy + Delta-G solvation = -2608.415487 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.13547 -36.54111 -35.00167 -33.65073 -31.75911 -30.14855 -29.50202 -26.55002 -24.43316 -23.82581 -22.22984 -21.46187 -20.36554 -19.57692 -17.21927 -16.31822 -15.72474 -15.58777 -14.66040 -14.54303 -14.34101 -13.99019 -13.92941 -13.44183 -13.16411 -12.79397 -12.48581 -12.23936 -11.82074 -11.65339 -11.44807 -11.37673 -10.85505 -10.60682 -10.53807 -9.97749 -9.72536 -9.63987 -9.37786 -9.08387 -8.49541 -8.35363 -8.20394 -6.00551 -4.02677 1.96428 2.72366 3.12456 3.31755 3.37970 3.41672 4.39289 4.47270 4.51075 4.63945 4.66174 4.86730 5.00796 5.15150 5.29915 5.35435 5.50119 5.54352 5.58776 5.71208 5.77977 5.86425 6.16993 6.27226 6.35934 6.65798 6.68967 6.72402 7.10514 7.14318 7.24977 7.53205 7.67098 7.81499 7.99635 8.03263 8.42873 9.04527 9.61491 11.10868 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042939 B = 0.003878 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.938076 B = 7218.859396 C = 7417.756281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.444 5.444 4 C 0.174 3.826 5 N -0.497 5.497 6 C -0.029 4.029 7 C -0.011 4.011 8 C 0.131 3.869 9 N -0.688 5.688 10 C 0.059 3.941 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.089 0.911 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.201 0.799 27 H 0.165 0.835 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.350 -2.101 -16.220 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.127 5.127 4 C -0.108 4.108 5 N -0.215 5.215 6 C -0.178 4.178 7 C -0.126 4.126 8 C 0.001 3.999 9 N -0.319 5.319 10 C -0.069 4.069 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.217 0.783 27 H 0.183 0.817 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.363 -2.295 -16.792 19.865 hybrid contribution -0.867 0.151 1.226 1.510 sum 9.496 -2.144 -15.566 18.359 Atomic orbital electron populations 1.22205 0.93320 1.03156 1.04489 1.21817 0.96508 0.79550 1.03870 1.45457 1.47652 1.12806 1.06823 1.24845 1.03823 0.88570 0.93539 1.70254 1.20881 1.18310 1.12018 1.22066 1.07125 0.97251 0.91310 1.21200 1.08315 0.93073 0.90051 1.20245 0.90455 1.01283 0.87933 1.60621 1.16558 1.30180 1.24555 1.22151 0.98671 1.00329 0.85778 1.21615 0.92071 1.00287 1.00429 1.19066 0.96440 0.96735 0.89320 1.21252 0.94743 1.43251 0.96514 0.92688 1.25025 0.97810 0.95297 0.96356 1.69963 1.35245 1.45239 1.03160 0.86598 0.85461 0.78568 0.77408 1.20668 1.21237 1.19865 0.89248 0.92468 0.91005 0.89334 0.89415 0.78268 0.81727 0.90649 0.92928 0.83982 0.91497 0.95469 0.93579 0.92667 0.96621 0.96757 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.10 0.85 6.66 -4.04 -0.03 0.82 16 3 N -0.44 -4.76 2.75 -113.99 -0.31 -5.08 16 4 C 0.17 1.92 12.56 -90.38 -1.13 0.79 16 5 N -0.50 -6.84 11.25 -14.66 -0.16 -7.01 16 6 C -0.03 -0.37 11.79 -17.81 -0.21 -0.58 16 7 C -0.01 -0.13 6.47 -81.60 -0.53 -0.66 16 8 C 0.13 1.54 5.94 -4.97 -0.03 1.51 16 9 N -0.69 -9.40 5.97 -115.05 -0.69 -10.08 16 10 C 0.06 0.96 5.68 -3.82 -0.02 0.94 16 11 C -0.11 -2.14 5.41 -26.73 -0.14 -2.28 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H 0.09 1.07 7.61 -51.93 -0.40 0.68 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.70 7.46 -51.93 -0.39 0.32 16 25 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 26 H 0.20 1.45 8.06 -52.49 -0.42 1.02 16 27 H 0.17 1.87 8.06 -52.48 -0.42 1.45 16 28 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.34 4.70 8.72 -39.29 -0.34 4.36 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -31.82 313.25 -9.12 -40.95 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.13 Total: -0.19 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -2.26 Total: -13.77 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.43 Total: -48.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.82 -9.12 -40.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661354665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.894 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds