Wall clock time and date at job start Sun Mar 29 2020 21:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35040 * 126.39897 * 264.69060 * 3 2 1 5 5 N 1.30502 * 108.70202 * 179.82812 * 4 3 2 6 6 C 1.34132 * 109.25419 * 0.43978 * 5 4 3 7 7 C 1.34670 * 108.01924 * 359.73084 * 6 5 4 8 8 C 1.50705 * 126.59354 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.46999 * 94.95236 * 8 7 6 10 10 C 1.46896 * 110.99834 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47024 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47034 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47055 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99922 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99760 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00185 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99711 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47294 * 90.00228 * 17 15 13 19 19 H 1.48496 * 109.47114 * 210.00068 * 17 15 13 20 20 H 1.48502 * 109.46873 * 330.00002 * 17 15 13 21 21 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 26 26 H 1.07999 * 125.65023 * 359.97438 * 4 3 2 27 27 H 1.08005 * 125.99084 * 179.72252 * 6 5 4 28 28 H 1.08993 * 109.47178 * 214.95737 * 8 7 6 29 29 H 1.09003 * 109.46653 * 334.96143 * 8 7 6 30 30 H 1.00906 * 111.00065 * 303.95650 * 9 8 7 31 31 H 1.08998 * 109.47599 * 300.00258 * 10 9 8 32 32 H 1.09007 * 109.46940 * 60.00271 * 10 9 8 33 33 H 1.08992 * 109.47144 * 300.00118 * 11 10 9 34 34 H 1.08999 * 109.46784 * 60.00104 * 11 10 9 35 35 H 1.09005 * 109.46930 * 300.00192 * 12 11 10 36 36 H 1.08994 * 109.47346 * 59.99761 * 12 11 10 37 37 H 0.97007 * 120.00052 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3802 2.1032 -1.0823 5 7 2.7564 3.2889 -0.6876 6 6 2.6584 3.3622 0.6481 7 6 2.1985 2.1790 1.0976 8 6 1.9326 1.8052 2.5332 9 7 0.5150 2.0328 2.8439 10 6 0.2184 1.6791 4.2385 11 6 -1.2638 1.9296 4.5240 12 6 -1.5725 1.5618 5.9766 13 6 -3.0325 1.8079 6.2577 14 1 -3.6756 2.1890 5.4783 15 6 -3.5471 1.5466 7.5099 16 7 -2.7640 1.0820 8.4588 17 14 -5.3566 1.8524 7.8584 18 1 -6.1336 0.6238 7.5553 19 1 -5.5318 2.2083 9.2894 20 1 -5.8429 2.9682 7.0077 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.3592 1.7576 -2.1053 27 1 2.9052 4.2198 1.2565 28 1 2.1737 0.7532 2.6853 29 1 2.5512 2.4183 3.1887 30 1 0.2508 2.9870 2.6491 31 1 0.4476 0.6262 4.4029 32 1 0.8251 2.2915 4.9056 33 1 -1.4925 2.9825 4.3597 34 1 -1.8707 1.3175 3.8569 35 1 -1.3436 0.5088 6.1413 36 1 -0.9655 2.1741 6.6434 37 1 -3.1260 0.8985 9.3399 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661354665.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:24 Heat of formation + Delta-G solvation = 21.849545 kcal Electronic energy + Delta-G solvation = -16290.977287 eV Core-core repulsion = 13681.733636 eV Total energy + Delta-G solvation = -2609.243650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.99762 -37.82613 -35.82770 -35.48585 -33.46151 -31.16751 -30.57670 -28.16713 -25.82184 -24.56449 -23.81747 -22.32050 -21.99783 -20.53971 -18.50430 -17.99244 -16.90149 -16.62451 -16.39089 -15.68714 -15.45124 -15.08531 -14.97507 -14.44889 -14.32661 -14.21619 -13.55543 -13.50404 -13.24995 -13.15494 -12.73235 -12.62467 -12.44336 -12.25649 -12.06790 -11.53274 -11.40566 -11.15146 -10.86491 -10.54876 -10.48311 -9.51582 -9.23954 -8.20083 -6.30791 1.08361 1.40340 1.41377 1.52633 1.96040 2.20892 2.41215 3.13253 3.32166 3.73855 3.87489 3.92910 4.17210 4.21437 4.25315 4.39678 4.42296 4.48560 4.62389 4.73360 4.74372 4.91041 4.97459 4.99621 5.10633 5.24893 5.40425 5.49807 5.52820 5.76073 5.79540 5.86771 6.00240 6.27337 6.36238 6.39529 6.86306 7.15299 7.38507 8.91698 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042939 B = 0.003878 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.938076 B = 7218.859396 C = 7417.756281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.444 5.444 4 C 0.180 3.820 5 N -0.535 5.535 6 C -0.046 4.046 7 C -0.018 4.018 8 C 0.137 3.863 9 N -0.683 5.683 10 C 0.074 3.926 11 C -0.091 4.091 12 C 0.025 3.975 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.264 1.264 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.236 0.764 27 H 0.170 0.830 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.343 0.657 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.046 0.954 34 H 0.052 0.948 35 H -0.007 1.007 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 -2.586 -17.586 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.127 5.127 4 C -0.102 4.102 5 N -0.254 5.254 6 C -0.195 4.195 7 C -0.135 4.135 8 C 0.007 3.993 9 N -0.315 5.315 10 C -0.054 4.054 11 C -0.129 4.129 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.189 1.189 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.109 0.891 25 H 0.139 0.861 26 H 0.252 0.748 27 H 0.187 0.813 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.010 -2.787 -18.172 20.933 hybrid contribution -0.726 0.279 1.606 1.785 sum 9.284 -2.508 -16.565 19.154 Atomic orbital electron populations 1.22135 0.94064 1.03614 1.02856 1.22037 0.95756 0.78392 1.05689 1.45644 1.47122 1.13587 1.06306 1.25546 1.01965 0.87812 0.94871 1.70237 1.22630 1.20078 1.12425 1.22295 1.07680 0.97960 0.91535 1.21158 1.08679 0.93223 0.90410 1.20211 0.89054 1.01861 0.88135 1.60535 1.18238 1.30254 1.22451 1.21829 0.95839 1.00387 0.87388 1.21352 0.94845 1.00048 0.96666 1.18973 0.95085 0.94864 0.92349 1.21703 0.96164 1.43340 0.96945 0.92414 1.25961 1.02813 0.94859 0.96139 1.70088 1.37489 1.46097 1.03666 0.85470 0.79442 0.78885 0.77402 1.19710 1.20704 1.18877 0.92326 0.92522 0.89548 0.89076 0.86109 0.74826 0.81264 0.89922 0.92227 0.83928 0.91463 0.95513 0.93475 0.92962 0.98811 0.99022 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 71.98 0.74 -2.00 16 2 C 0.10 1.39 6.66 86.38 0.58 1.96 16 3 N -0.44 -8.61 2.75 -514.55 -1.42 -10.03 16 4 C 0.18 3.59 12.56 180.26 2.26 5.85 16 5 N -0.54 -14.17 11.25 -200.30 -2.25 -16.42 16 6 C -0.05 -1.17 11.79 83.52 0.98 -0.18 16 7 C -0.02 -0.42 6.47 40.95 0.26 -0.16 16 8 C 0.14 3.05 5.94 85.56 0.51 3.56 16 9 N -0.68 -18.07 5.97 -517.91 -3.09 -21.16 16 10 C 0.07 2.39 5.68 86.31 0.49 2.88 16 11 C -0.09 -3.68 5.41 30.60 0.17 -3.52 16 12 C 0.02 1.31 4.97 29.85 0.15 1.46 16 13 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.00 5.46 84.66 0.46 0.46 16 16 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 17 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H 0.06 1.34 7.61 -2.39 -0.02 1.32 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 1.22 7.46 -2.39 -0.02 1.20 16 25 H 0.12 0.87 8.13 -2.39 -0.02 0.85 16 26 H 0.24 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.17 3.84 8.06 -2.91 -0.02 3.81 16 28 H 0.08 1.73 7.48 -2.39 -0.02 1.71 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.34 9.15 8.72 -89.69 -0.78 8.37 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H -0.01 -0.37 8.14 -2.38 -0.02 -0.38 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -68.60 313.25 2.63 -65.96 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.25 Total: 12.35 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 6.83 Total: -20.58 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -6.48 Total: -104.10 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.60 2.63 -65.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661354665.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.813 kcal (2) G-P(sol) polarization free energy of solvation -68.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds