Wall clock time and date at job start Sun Mar 29 2020 22:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47294 * 2 1 4 4 C 1.53004 * 109.47238 * 120.00113 * 2 1 3 5 5 C 1.53000 * 109.46766 * 295.61344 * 4 2 1 6 6 C 1.53004 * 117.49490 * 184.73837 * 5 4 2 7 7 C 1.53003 * 59.99965 * 252.51203 * 6 5 4 8 8 N 1.46902 * 109.47253 * 240.00102 * 2 1 3 9 9 C 1.46847 * 111.00260 * 177.90749 * 8 2 1 10 10 C 1.53033 * 109.52528 * 174.16046 * 9 8 2 11 11 C 1.53123 * 109.27954 * 59.17486 * 10 9 8 12 12 C 1.50694 * 109.52273 * 182.44024 * 11 10 9 13 13 H 1.08003 * 119.99850 * 119.68763 * 12 11 10 14 14 C 1.37878 * 120.00591 * 299.68644 * 12 11 10 15 15 N 1.31515 * 119.99274 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00497 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46987 * 89.99801 * 16 14 12 18 18 H 1.48497 * 109.47196 * 209.99800 * 16 14 12 19 19 H 1.48497 * 109.47186 * 330.00047 * 16 14 12 20 20 C 1.53115 * 109.16003 * 302.35019 * 11 10 9 21 21 C 1.46850 * 110.99914 * 53.69364 * 8 2 1 22 22 H 1.08997 * 109.46833 * 59.99818 * 1 2 3 23 23 H 1.09001 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47115 * 299.99775 * 1 2 3 25 25 H 1.08999 * 109.46997 * 175.61391 * 4 2 1 26 26 H 1.08998 * 109.47184 * 55.61423 * 4 2 1 27 27 H 1.09000 * 115.56714 * 330.42607 * 5 4 2 28 28 H 1.09001 * 117.49336 * 145.02011 * 6 5 4 29 29 H 1.08992 * 117.50338 * 0.02562 * 6 5 4 30 30 H 1.08996 * 117.49756 * 107.49197 * 7 6 5 31 31 H 1.09000 * 117.49400 * 252.48983 * 7 6 5 32 32 H 1.09004 * 109.45966 * 294.17812 * 9 8 2 33 33 H 1.08997 * 109.46238 * 54.14031 * 9 8 2 34 34 H 1.09005 * 109.50563 * 299.23711 * 10 9 8 35 35 H 1.08998 * 109.50220 * 179.11965 * 10 9 8 36 36 H 1.08998 * 109.51862 * 62.25424 * 11 10 9 37 37 H 0.97010 * 119.99995 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.50142 * 297.70579 * 20 11 10 39 39 H 1.09003 * 109.50181 * 177.59786 * 20 11 10 40 40 H 1.08996 * 109.46298 * 305.85371 * 21 8 2 41 41 H 1.08997 * 109.45886 * 65.82604 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6221 0.0609 2.4960 6 6 2.1333 -0.4399 3.8484 7 6 0.6621 -0.6241 3.4708 8 7 2.0197 -0.6925 -1.1995 9 6 3.4868 -0.6689 -1.2587 10 6 3.9648 -1.5201 -2.4372 11 6 3.3739 -0.9635 -3.7355 12 6 3.7926 -1.8331 -4.8928 13 1 3.0448 -2.3299 -5.4932 14 6 5.1302 -1.9946 -5.1853 15 7 6.0408 -1.3892 -4.4546 16 14 5.6492 -3.0731 -6.6195 17 1 5.7340 -2.2499 -7.8526 18 1 6.9769 -3.6731 -6.3325 19 1 4.6492 -4.1536 -6.8135 20 6 1.8465 -0.9539 -3.6288 21 6 1.4298 -0.1190 -2.4159 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1272 -0.7898 1.2108 26 1 1.6140 -1.7237 1.2894 27 1 1.5212 1.1381 2.3637 28 1 2.3687 0.3079 4.6056 29 1 2.7676 -1.3262 3.8499 30 1 0.3283 -1.6319 3.2238 31 1 -0.0704 0.0023 3.9800 32 1 3.8285 0.3579 -1.3901 33 1 3.8942 -1.0711 -0.3312 34 1 3.6353 -2.5500 -2.2996 35 1 5.0531 -1.4897 -2.4902 36 1 3.7344 0.0529 -3.8933 37 1 6.9820 -1.5031 -4.6601 38 1 1.4836 -1.9749 -3.5100 39 1 1.4213 -0.5190 -4.5334 40 1 0.3433 -0.1221 -2.3288 41 1 1.7811 0.9051 -2.5418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258468355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:55 Heat of formation + Delta-G solvation = 8.824944 kcal Electronic energy + Delta-G solvation = -17467.076496 eV Core-core repulsion = 14960.808400 eV Total energy + Delta-G solvation = -2506.268096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.92642 -37.29107 -34.51586 -32.13982 -30.16241 -29.51746 -27.05790 -25.44665 -22.47582 -22.40969 -21.71620 -20.64080 -19.70811 -18.54177 -16.42861 -15.63736 -15.58155 -14.55809 -14.44516 -14.05814 -13.77292 -13.17415 -12.65198 -12.57155 -12.53148 -12.28699 -11.83035 -11.60744 -11.47310 -11.18490 -10.97089 -10.88626 -10.79533 -10.62024 -10.45868 -10.14105 -10.06746 -9.91329 -9.76917 -9.33543 -8.85064 -8.62327 -8.24546 -7.64273 -5.92949 -3.98057 3.33895 3.40534 3.44341 3.76458 4.33787 4.48871 4.81261 4.88065 4.90986 5.22082 5.32022 5.37303 5.51924 5.55984 5.64861 5.74099 5.82997 5.88807 5.96029 6.04243 6.07679 6.14949 6.17684 6.20757 6.27038 6.37488 6.44196 6.53314 6.70463 6.71906 6.93189 7.15378 7.24347 7.51421 7.70137 7.80374 7.90776 8.11084 8.21887 8.53675 9.05735 9.66054 11.13223 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.044731 B = 0.005105 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.811205 B = 5483.305261 C = 5878.840269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.031 0.969 4 C -0.083 4.083 5 C -0.144 4.144 6 C -0.185 4.185 7 C -0.181 4.181 8 N -0.532 5.532 9 C 0.055 3.945 10 C -0.103 4.103 11 C 0.047 3.953 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.106 4.106 21 C 0.057 3.943 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.258 0.742 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 3.057 12.750 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.049 0.951 4 C -0.120 4.120 5 C -0.163 4.163 6 C -0.222 4.222 7 C -0.218 4.218 8 N -0.257 5.257 9 C -0.073 4.073 10 C -0.142 4.142 11 C 0.029 3.971 12 C -0.548 4.548 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.144 4.144 21 C -0.071 4.071 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.609 2.583 12.781 15.625 hybrid contribution 0.657 0.344 -0.772 1.071 sum -7.952 2.928 12.009 14.698 Atomic orbital electron populations 1.21906 0.94947 1.02246 1.01007 1.21548 0.95157 0.95132 0.90783 0.95084 1.21258 1.01079 0.98624 0.91058 1.22311 1.03777 0.99389 0.90829 1.22958 0.97164 1.03416 0.98637 1.23011 0.92728 1.02039 1.04005 1.62022 1.08230 1.54354 1.01088 1.22322 0.85908 0.98817 1.00206 1.21650 1.02905 0.96962 0.92645 1.18682 0.88794 0.96397 0.93237 1.21225 0.91692 1.28803 1.13039 0.92798 1.24967 0.96796 0.95843 0.96422 1.69886 1.00588 1.43619 1.39104 0.86641 0.77891 0.80845 0.82888 1.20839 1.21315 1.19963 1.21675 0.99967 0.98761 0.93988 1.22185 0.98045 0.96063 0.90769 0.92732 0.92061 0.92653 0.91198 0.91125 0.88189 0.89196 0.88853 0.88824 0.89307 0.96197 0.92360 0.93902 0.89083 0.96261 0.93162 0.92560 0.93361 0.91922 0.96124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.58 37.16 0.32 -1.52 16 2 C 0.08 1.22 2.11 -67.71 -0.14 1.07 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.08 -1.10 4.92 -26.73 -0.13 -1.23 16 5 C -0.14 -1.59 4.69 -90.62 -0.43 -2.02 16 6 C -0.18 -1.83 10.25 -26.73 -0.27 -2.10 16 7 C -0.18 -1.75 10.18 -26.73 -0.27 -2.03 16 8 N -0.53 -9.65 4.52 -226.69 -1.03 -10.67 16 9 C 0.05 1.10 5.26 -3.84 -0.02 1.08 16 10 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 11 C 0.05 1.20 2.16 -91.65 -0.20 1.01 16 12 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 13 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 15 N -0.89 -25.75 11.37 55.43 0.63 -25.12 16 16 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 21 C 0.06 1.06 5.08 -3.83 -0.02 1.04 16 22 H 0.05 0.70 6.20 -51.93 -0.32 0.38 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 25 H 0.07 1.00 6.12 -51.93 -0.32 0.68 16 26 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 27 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.08 5.99 -51.93 -0.31 0.77 16 34 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.03 5.86 -51.93 -0.30 0.72 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -28.15 311.60 -9.95 -38.10 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.39 Total: -0.84 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.83 Total: -22.68 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.40 Total: -35.79 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.15 -9.95 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258468355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.924 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds