Wall clock time and date at job start Sun Mar 29 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00439 * 2 1 4 4 H 1.48498 * 109.47646 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47312 * 300.00085 * 3 2 1 6 6 H 1.48506 * 109.46872 * 59.99922 * 3 2 1 7 7 C 1.37885 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99323 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00317 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.34009 * 124.22468 * 89.96979 * 10 9 7 12 12 O 1.21541 * 123.81505 * 359.94235 * 11 10 9 13 13 N 1.34980 * 112.36947 * 179.97438 * 11 10 9 14 14 C 1.45939 * 105.99523 * 0.02562 * 13 11 10 15 15 C 1.53571 * 112.01135 * 238.41429 * 14 13 11 16 16 C 1.54499 * 104.08611 * 275.02034 * 15 14 13 17 17 C 1.53977 * 106.66178 * 337.67240 * 16 15 14 18 18 C 1.53571 * 112.01079 * 121.58181 * 14 13 11 19 19 C 1.35208 * 124.22026 * 269.95417 * 10 9 7 20 20 O 1.21235 * 127.46858 * 0.03162 * 19 10 9 21 21 H 0.97005 * 119.99769 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47200 * 59.99469 * 9 7 2 23 23 H 1.09000 * 109.46739 * 300.00070 * 9 7 2 24 24 H 0.97002 * 127.00288 * 180.02562 * 13 11 10 25 25 H 1.08999 * 110.50635 * 156.36822 * 15 14 13 26 26 H 1.08999 * 110.50963 * 33.67130 * 15 14 13 27 27 H 1.08999 * 110.02012 * 218.37913 * 16 15 14 28 28 H 1.08993 * 110.02517 * 96.97182 * 16 15 14 29 29 H 1.08997 * 110.01708 * 119.30557 * 17 16 15 30 30 H 1.09001 * 110.01783 * 240.70100 * 17 16 15 31 31 H 1.09000 * 110.51149 * 326.32653 * 18 14 13 32 32 H 1.09003 * 110.50881 * 203.63378 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6128 -0.0015 11 6 2.6921 -4.1858 1.1067 12 8 2.3971 -3.8398 2.2339 13 7 3.5501 -5.1903 0.8296 14 6 3.6193 -5.2701 -0.6260 15 6 3.2073 -6.6548 -1.1467 16 6 4.5036 -7.4907 -1.0587 17 6 5.6745 -6.4907 -1.0580 18 6 5.0519 -5.0794 -1.1454 19 6 2.6970 -4.1908 -1.1193 20 8 2.4501 -3.9011 -2.2704 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5563 -0.8919 23 1 0.6239 -2.5575 0.8880 24 1 4.0242 -5.7459 1.4679 25 1 2.8653 -6.5881 -2.1795 26 1 2.4315 -7.0856 -0.5137 27 1 4.5796 -8.1534 -1.9207 28 1 4.5102 -8.0734 -0.1376 29 1 6.2484 -6.5889 -0.1366 30 1 6.3179 -6.6688 -1.9196 31 1 5.5982 -4.3810 -0.5115 32 1 5.0404 -4.7305 -2.1780 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016048375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:03 Heat of formation + Delta-G solvation = -56.101475 kcal Electronic energy + Delta-G solvation = -17450.420951 eV Core-core repulsion = 14604.245334 eV Total energy + Delta-G solvation = -2846.175617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.99565 -38.11067 -37.47455 -35.05447 -33.71899 -32.22047 -29.01155 -28.36646 -27.56514 -23.66869 -22.86672 -20.62406 -20.52835 -19.86359 -17.38148 -16.78023 -16.12200 -15.78251 -15.45765 -14.97052 -14.78332 -14.36941 -13.89771 -13.68350 -13.33735 -12.43038 -12.40539 -11.74816 -11.69865 -11.53270 -11.40611 -11.31727 -11.09415 -10.77322 -10.60620 -10.42715 -10.00702 -9.87588 -9.44515 -9.08161 -8.55204 -8.51409 -6.13792 -4.18770 2.20508 2.99892 3.28812 3.35117 3.40295 3.66002 3.77417 4.25647 4.40059 4.45691 4.53903 4.97622 5.17691 5.22771 5.27028 5.31109 5.46893 5.63147 5.74503 5.80019 5.92014 6.03831 6.08120 6.15996 6.61218 7.06673 7.20700 7.23560 7.79605 7.97844 8.03606 8.10877 8.74155 8.88320 9.46086 10.95790 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.007190 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.474668 B = 3893.112788 C = 4022.651021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.248 3.752 10 N -0.559 5.559 11 C 0.700 3.300 12 O -0.541 6.541 13 N -0.725 5.725 14 C 0.110 3.890 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.117 4.117 19 C 0.532 3.468 20 O -0.471 6.471 21 H 0.266 0.734 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.431 0.569 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.558 -14.340 -2.260 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.130 3.870 10 N -0.302 5.302 11 C 0.401 3.599 12 O -0.414 6.414 13 N -0.390 5.390 14 C 0.018 3.982 15 C -0.156 4.156 16 C -0.159 4.159 17 C -0.159 4.159 18 C -0.156 4.156 19 C 0.318 3.682 20 O -0.342 6.342 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.274 0.726 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.981 -13.742 -2.285 16.575 hybrid contribution 0.635 0.736 0.340 1.030 sum 9.616 -13.006 -1.945 16.291 Atomic orbital electron populations 1.69933 1.06025 1.27318 1.49660 1.24906 0.94964 0.99383 0.94568 0.86330 0.79942 0.82802 0.77723 1.19704 1.20693 1.20676 1.21296 0.93435 0.90149 1.52301 0.92161 1.19600 0.86670 0.80844 0.99858 1.47011 1.43099 1.33901 1.06227 1.16165 0.79209 0.79581 0.84958 1.90952 1.63230 1.66422 1.20772 1.45319 1.49435 1.38011 1.06275 1.21340 0.97579 0.96828 0.82495 1.22449 0.98512 0.91924 1.02668 1.22196 0.93654 0.97811 1.02244 1.22202 0.97758 0.93703 1.02275 1.22447 0.92124 0.98193 1.02823 1.20189 0.80357 0.82128 0.85512 1.90725 1.60126 1.65506 1.17803 0.92458 0.93009 0.92846 0.72600 0.89220 0.90231 0.91135 0.91504 0.91502 0.91127 0.90104 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.53 -15.51 9.39 -34.44 -0.32 -15.83 16 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.25 6.70 5.47 -5.20 -0.03 6.67 16 10 N -0.56 -12.70 2.60 -122.23 -0.32 -13.02 16 11 C 0.70 14.63 8.64 -87.42 -0.76 13.87 16 12 O -0.54 -13.22 17.49 5.33 0.09 -13.13 16 13 N -0.73 -10.79 6.03 -53.62 -0.32 -11.12 16 14 C 0.11 1.58 1.04 -132.88 -0.14 1.44 16 15 C -0.12 -1.31 6.02 -25.65 -0.15 -1.46 16 16 C -0.12 -1.00 6.82 -25.44 -0.17 -1.18 16 17 C -0.12 -1.04 6.82 -25.44 -0.17 -1.22 16 18 C -0.12 -1.41 6.03 -25.65 -0.15 -1.56 16 19 C 0.53 10.65 7.02 -10.99 -0.08 10.57 16 20 O -0.47 -10.52 17.80 5.60 0.10 -10.42 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.05 1.46 8.03 -51.93 -0.42 1.04 16 23 H 0.05 1.53 7.87 -51.93 -0.41 1.12 16 24 H 0.43 4.98 8.96 -40.82 -0.37 4.62 16 25 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -33.38 276.74 -6.75 -40.13 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.11 Total: -0.96 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -2.08 Total: 13.08 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.09 Total: -49.94 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.19 Total: -23.55 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.38 -6.75 -40.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016048375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.970 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds