Wall clock time and date at job start Sun Mar 29 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00439 * 2 1 4 4 H 1.48498 * 109.47646 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47312 * 300.00085 * 3 2 1 6 6 H 1.48506 * 109.46872 * 59.99922 * 3 2 1 7 7 C 1.37885 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99323 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00317 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.34009 * 124.22468 * 89.96979 * 10 9 7 12 12 O 1.21541 * 123.81505 * 359.94235 * 11 10 9 13 13 N 1.34980 * 112.36947 * 179.97438 * 11 10 9 14 14 C 1.45939 * 105.99523 * 0.02562 * 13 11 10 15 15 C 1.53571 * 112.01135 * 238.41429 * 14 13 11 16 16 C 1.54499 * 104.08611 * 275.02034 * 15 14 13 17 17 C 1.53977 * 106.66178 * 337.67240 * 16 15 14 18 18 C 1.53571 * 112.01079 * 121.58181 * 14 13 11 19 19 C 1.35208 * 124.22026 * 269.95417 * 10 9 7 20 20 O 1.21235 * 127.46858 * 0.03162 * 19 10 9 21 21 H 0.97005 * 119.99769 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47200 * 59.99469 * 9 7 2 23 23 H 1.09000 * 109.46739 * 300.00070 * 9 7 2 24 24 H 0.97002 * 127.00288 * 180.02562 * 13 11 10 25 25 H 1.08999 * 110.50635 * 156.36822 * 15 14 13 26 26 H 1.08999 * 110.50963 * 33.67130 * 15 14 13 27 27 H 1.08999 * 110.02012 * 218.37913 * 16 15 14 28 28 H 1.08993 * 110.02517 * 96.97182 * 16 15 14 29 29 H 1.08997 * 110.01708 * 119.30557 * 17 16 15 30 30 H 1.09001 * 110.01783 * 240.70100 * 17 16 15 31 31 H 1.09000 * 110.51149 * 326.32653 * 18 14 13 32 32 H 1.09003 * 110.50881 * 203.63378 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2028 -3.6128 -0.0015 11 6 2.6921 -4.1858 1.1067 12 8 2.3971 -3.8398 2.2339 13 7 3.5501 -5.1903 0.8296 14 6 3.6193 -5.2701 -0.6260 15 6 3.2073 -6.6548 -1.1467 16 6 4.5036 -7.4907 -1.0587 17 6 5.6745 -6.4907 -1.0580 18 6 5.0519 -5.0794 -1.1454 19 6 2.6970 -4.1908 -1.1193 20 8 2.4501 -3.9011 -2.2704 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5563 -0.8919 23 1 0.6239 -2.5575 0.8880 24 1 4.0242 -5.7459 1.4679 25 1 2.8653 -6.5881 -2.1795 26 1 2.4315 -7.0856 -0.5137 27 1 4.5796 -8.1534 -1.9207 28 1 4.5102 -8.0734 -0.1376 29 1 6.2484 -6.5889 -0.1366 30 1 6.3179 -6.6688 -1.9196 31 1 5.5982 -4.3810 -0.5115 32 1 5.0404 -4.7305 -2.1780 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016048375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:03 Heat of formation + Delta-G solvation = -80.559309 kcal Electronic energy + Delta-G solvation = -17451.481522 eV Core-core repulsion = 14604.245334 eV Total energy + Delta-G solvation = -2847.236188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.53574 -39.69927 -38.80980 -36.81335 -35.48724 -34.06534 -30.00138 -29.87623 -29.12801 -25.67507 -24.45682 -21.99751 -21.39024 -21.37811 -19.01874 -18.86033 -17.53658 -17.19559 -16.97353 -16.84519 -16.17705 -15.72454 -15.50968 -15.17493 -14.67545 -14.38649 -13.73711 -13.53624 -13.23290 -12.82062 -12.73517 -12.64624 -12.41539 -12.15095 -12.11630 -11.97616 -11.73656 -11.27449 -11.08504 -10.73744 -10.62919 -10.33918 -8.35924 -6.51177 0.60483 1.33425 1.36513 1.40506 1.50959 2.05382 2.27310 2.34663 2.95172 2.98748 3.47569 3.50986 4.07778 4.27158 4.35852 4.42179 4.49846 4.65259 4.71725 4.79455 4.90541 4.98205 5.06031 5.12100 5.25223 5.30494 5.48840 5.53806 5.80959 5.87375 6.29073 6.45451 6.56924 7.13684 7.25292 8.74468 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036570 B = 0.007190 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.474668 B = 3893.112788 C = 4022.651021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.054 0.946 9 C 0.262 3.738 10 N -0.576 5.576 11 C 0.695 3.305 12 O -0.584 6.584 13 N -0.690 5.690 14 C 0.117 3.883 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.117 4.117 19 C 0.521 3.479 20 O -0.502 6.502 21 H 0.273 0.727 22 H 0.029 0.971 23 H 0.026 0.974 24 H 0.451 0.549 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.946 -15.679 -2.494 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.072 0.928 9 C 0.143 3.857 10 N -0.320 5.320 11 C 0.397 3.603 12 O -0.461 6.461 13 N -0.356 5.356 14 C 0.026 3.974 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.156 4.156 19 C 0.310 3.690 20 O -0.375 6.375 21 H 0.082 0.918 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.299 0.701 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.418 -15.157 -2.530 19.145 hybrid contribution -0.159 1.125 0.366 1.193 sum 11.259 -14.033 -2.165 18.121 Atomic orbital electron populations 1.70036 1.07570 1.28752 1.49712 1.25892 0.95970 1.03255 0.93615 0.85240 0.78567 0.77838 0.78429 1.19175 1.19353 1.19571 1.21531 0.93258 0.91472 1.53282 0.92822 1.19019 0.87139 0.82240 0.97323 1.46978 1.43164 1.33599 1.08230 1.16271 0.79841 0.80464 0.83764 1.90914 1.64984 1.68053 1.22100 1.45075 1.47374 1.35986 1.07148 1.21539 0.97881 0.96481 0.81476 1.22533 1.00687 0.89802 1.02274 1.22211 0.91077 0.97433 1.04275 1.22211 0.97962 0.90690 1.04147 1.22529 0.90032 1.00950 1.02104 1.21192 0.80468 0.82818 0.84538 1.90690 1.61280 1.66705 1.18799 0.91822 0.95265 0.95630 0.70086 0.89546 0.89781 0.89187 0.89542 0.89719 0.89314 0.90520 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.31 13.29 21.45 0.28 -56.02 16 2 C 0.01 0.76 5.46 84.66 0.46 1.22 16 3 Si 0.98 45.59 29.54 68.60 2.03 47.62 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.56 -33.57 9.39 25.60 0.24 -33.33 16 8 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.26 15.02 5.47 85.63 0.47 15.49 16 10 N -0.58 -27.20 2.60 -777.49 -2.03 -29.22 16 11 C 0.70 29.55 8.64 179.23 1.55 31.10 16 12 O -0.58 -29.37 17.49 -3.85 -0.07 -29.44 16 13 N -0.69 -19.50 6.03 -441.71 -2.66 -22.16 16 14 C 0.12 3.20 1.04 3.22 0.00 3.21 16 15 C -0.11 -2.25 6.02 31.30 0.19 -2.07 16 16 C -0.11 -1.32 6.82 31.43 0.21 -1.11 16 17 C -0.11 -1.41 6.82 31.43 0.21 -1.20 16 18 C -0.12 -2.53 6.03 31.30 0.19 -2.35 16 19 C 0.52 21.26 7.02 87.46 0.61 21.87 16 20 O -0.50 -23.14 17.80 -2.89 -0.05 -23.19 16 21 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 22 H 0.03 1.77 8.03 -2.39 -0.02 1.75 16 23 H 0.03 1.58 7.87 -2.39 -0.02 1.56 16 24 H 0.45 9.16 8.96 -92.71 -0.83 8.33 16 25 H 0.09 1.82 8.07 -2.39 -0.02 1.80 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 Total: -1.00 -75.99 276.74 1.95 -74.04 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.30 Total: 5.54 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 4.14 Total: 32.83 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.40 Total: -107.41 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.12 Total: -52.63 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -75.99 1.95 -74.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016048375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.519 kcal (2) G-P(sol) polarization free energy of solvation -75.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds