Wall clock time and date at job start Sun Mar 29 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 110.53272 * 2 1 4 4 C 1.53003 * 117.49426 * 130.12585 * 3 2 1 5 5 C 1.52998 * 117.49897 * 61.47000 * 3 2 1 6 6 N 1.47307 * 110.60226 * 122.83630 * 2 1 3 7 7 C 1.34524 * 106.61970 * 118.52677 * 6 2 1 8 8 O 1.21542 * 123.76752 * 180.02562 * 7 6 2 9 9 N 1.33785 * 112.45953 * 359.97438 * 7 6 2 10 10 C 1.46506 * 124.17930 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46871 * 90.02059 * 10 9 7 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.34768 * 111.64434 * 0.23222 * 9 7 6 20 20 O 1.21233 * 127.15751 * 179.73354 * 19 9 7 21 21 H 1.09006 * 109.46809 * 297.86499 * 1 2 3 22 22 H 1.09003 * 109.47877 * 57.86369 * 1 2 3 23 23 H 1.08999 * 109.47285 * 177.87012 * 1 2 3 24 24 H 1.08997 * 115.55117 * 275.79059 * 3 2 1 25 25 H 1.08996 * 117.50208 * 0.02562 * 4 3 2 26 26 H 1.09007 * 117.49425 * 145.01897 * 4 3 2 27 27 H 1.08993 * 117.49813 * 214.97848 * 5 3 2 28 28 H 1.09007 * 117.49406 * 359.97438 * 5 3 2 29 29 H 0.96998 * 126.68848 * 298.48296 * 6 2 1 30 30 H 1.09005 * 109.46943 * 330.02379 * 10 9 7 31 31 H 1.09002 * 109.47064 * 210.02642 * 10 9 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0666 1.4329 0.0000 4 6 3.1335 1.7875 1.0378 5 6 1.7074 2.3218 1.1923 6 7 2.0483 -0.7477 1.1586 7 6 2.7599 -1.7771 0.6650 8 8 3.3284 -2.5987 1.3571 9 7 2.7710 -1.7960 -0.6726 10 6 3.4679 -2.8039 -1.4757 11 6 2.5387 -3.9582 -1.7497 12 1 1.5298 -3.9425 -1.3646 13 6 2.9766 -5.0344 -2.4922 14 7 2.1655 -6.0416 -2.7318 15 14 4.7218 -5.0618 -3.1577 16 1 4.7475 -4.4388 -4.5054 17 1 5.6120 -4.3018 -2.2439 18 1 5.1932 -6.4668 -3.2527 19 6 2.0666 -0.7703 -1.1901 20 8 1.8966 -0.5169 -2.3635 21 1 -0.3633 0.4804 0.9086 22 1 -0.3635 0.5466 -0.8702 23 1 -0.3634 -1.0269 -0.0382 24 1 2.1386 1.9079 -0.9784 25 1 3.4533 1.0001 1.7202 26 1 3.9071 2.4964 0.7422 27 1 1.5433 3.3817 0.9984 28 1 1.0883 1.8859 1.9765 29 1 1.9050 -0.5382 2.0947 30 1 4.3415 -3.1621 -0.9310 31 1 3.7850 -2.3606 -2.4197 32 1 2.4734 -6.7985 -3.2544 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024089560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:02 Heat of formation + Delta-G solvation = -38.644221 kcal Electronic energy + Delta-G solvation = -17485.629515 eV Core-core repulsion = 14640.210902 eV Total energy + Delta-G solvation = -2845.418613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.54202 -39.65204 -38.87424 -36.86147 -35.76699 -34.43341 -31.55955 -30.51601 -26.42555 -25.04646 -24.11468 -23.12365 -21.58133 -21.23979 -19.38310 -18.95988 -17.77202 -17.37589 -16.91874 -16.69183 -16.12066 -15.82758 -15.36537 -15.10410 -14.62467 -14.50229 -13.99304 -13.64553 -13.44356 -13.34951 -12.70054 -12.58948 -12.36071 -12.29851 -11.90598 -11.81841 -11.55864 -11.24333 -10.91824 -10.84570 -10.69870 -10.40434 -8.43043 -6.52362 0.61295 1.27222 1.32162 1.37830 1.45028 2.05590 2.14616 2.25318 2.82737 2.89295 2.99350 3.39715 3.79156 4.03486 4.18628 4.22222 4.34855 4.48567 4.64042 4.66247 4.71193 4.83781 4.89149 5.04010 5.13313 5.19567 5.23481 5.30124 5.81790 6.02040 6.21636 6.45413 6.46975 7.07635 7.19206 8.73689 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037225 B = 0.007525 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.001484 B = 3720.057897 C = 3805.940989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.164 3.836 3 C -0.175 4.175 4 C -0.179 4.179 5 C -0.131 4.131 6 N -0.699 5.699 7 C 0.700 3.300 8 O -0.583 6.583 9 N -0.570 5.570 10 C 0.228 3.772 11 C -0.553 4.553 12 H 0.029 0.971 13 C 0.019 3.981 14 N -0.936 5.936 15 Si 0.948 3.052 16 H -0.257 1.257 17 H -0.246 1.246 18 H -0.270 1.270 19 C 0.520 3.480 20 O -0.501 6.501 21 H 0.116 0.884 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.121 0.879 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.450 0.550 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 19.169 8.256 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.073 3.927 3 C -0.195 4.195 4 C -0.217 4.217 5 C -0.168 4.168 6 N -0.365 5.365 7 C 0.401 3.599 8 O -0.459 6.459 9 N -0.314 5.314 10 C 0.107 3.893 11 C -0.591 4.591 12 H 0.048 0.952 13 C -0.181 4.181 14 N -0.574 5.574 15 Si 0.769 3.231 16 H -0.181 1.181 17 H -0.169 1.169 18 H -0.195 1.195 19 C 0.308 3.692 20 O -0.373 6.373 21 H 0.135 0.865 22 H 0.109 0.891 23 H 0.065 0.935 24 H 0.139 0.861 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.139 0.861 28 H 0.132 0.868 29 H 0.297 0.703 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.233 18.622 7.831 20.203 hybrid contribution 0.424 -0.912 -0.285 1.045 sum 0.191 17.711 7.546 19.252 Atomic orbital electron populations 1.21985 0.88210 1.03070 1.06352 1.20948 0.97844 0.91971 0.81889 1.22295 1.07549 0.91476 0.98135 1.23147 0.93644 1.03707 1.01159 1.23140 0.96717 0.99904 0.97005 1.45471 1.53977 1.27472 1.09588 1.16021 0.79907 0.82335 0.81664 1.90926 1.50468 1.42860 1.61672 1.46499 1.48887 1.27842 1.08125 1.19580 0.92879 0.85795 0.91064 1.21292 0.98965 1.03623 1.35218 0.95246 1.25831 1.02951 0.94100 0.95206 1.70021 1.38435 1.09007 1.39969 0.85716 0.78566 0.78885 0.79954 1.18146 1.16941 1.19520 1.21472 0.76743 0.80369 0.90607 1.90692 1.57686 1.70568 1.18318 0.86518 0.89074 0.93504 0.86070 0.88928 0.87579 0.86069 0.86762 0.70262 0.93212 0.93064 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.81 71.98 0.63 -2.29 16 2 C 0.16 4.29 1.15 2.98 0.00 4.29 16 3 C -0.18 -3.36 5.21 -10.79 -0.06 -3.42 16 4 C -0.18 -2.91 9.87 30.62 0.30 -2.60 16 5 C -0.13 -1.44 9.79 30.62 0.30 -1.14 16 6 N -0.70 -18.99 4.34 -439.83 -1.91 -20.90 16 7 C 0.70 28.57 8.62 179.44 1.55 30.12 16 8 O -0.58 -28.15 17.48 -3.85 -0.07 -28.22 16 9 N -0.57 -25.65 2.59 -777.21 -2.01 -27.66 16 10 C 0.23 11.77 4.52 85.63 0.39 12.16 16 11 C -0.55 -33.87 9.94 25.60 0.25 -33.62 16 12 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 13 C 0.02 1.13 5.47 84.66 0.46 1.59 16 14 N -0.94 -59.61 13.96 21.45 0.30 -59.32 16 15 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 16 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 C 0.52 20.47 6.99 87.94 0.61 21.09 16 20 O -0.50 -22.28 17.75 -2.88 -0.05 -22.33 16 21 H 0.12 1.49 7.57 -2.38 -0.02 1.47 16 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.09 1.68 6.86 -2.39 -0.02 1.66 16 26 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 0.89 7.78 -2.38 -0.02 0.88 16 29 H 0.45 8.72 8.75 -92.71 -0.81 7.91 16 30 H 0.05 2.57 6.92 -2.38 -0.02 2.55 16 31 H 0.05 2.56 7.43 -2.39 -0.02 2.54 16 32 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -78.98 277.12 2.87 -76.11 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.27 Total: 9.71 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 4.45 Total: 26.17 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -3.62 Total: -107.88 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.12 Total: -50.54 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -78.98 2.87 -76.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024089560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.462 kcal (2) G-P(sol) polarization free energy of solvation -78.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds