Wall clock time and date at job start Sun Mar 29 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99859 * 2 1 4 4 H 1.48502 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47158 * 299.99823 * 3 2 1 6 6 H 1.48498 * 109.47207 * 59.99952 * 3 2 1 7 7 C 1.38809 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00160 * 191.69035 * 7 2 1 9 9 N 1.36937 * 119.99756 * 11.69159 * 7 2 1 10 10 C 1.47084 * 120.88231 * 209.42486 * 9 7 2 11 11 C 1.53242 * 108.51773 * 231.20736 * 10 9 7 12 12 N 1.46893 * 109.34265 * 306.16291 * 11 10 9 13 13 C 1.46895 * 111.00353 * 187.25512 * 12 11 10 14 14 C 1.53002 * 109.46887 * 76.33470 * 13 12 11 15 15 F 1.39905 * 109.46834 * 53.92431 * 14 13 12 16 16 F 1.39905 * 109.47144 * 173.91715 * 14 13 12 17 17 F 1.39897 * 109.47398 * 293.92040 * 14 13 12 18 18 C 1.46900 * 111.26501 * 63.10713 * 12 11 10 19 19 C 1.47081 * 120.88455 * 29.44380 * 9 7 2 20 20 H 0.96993 * 119.99540 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.63130 * 111.49522 * 10 9 7 22 22 H 1.09001 * 109.62610 * 350.91155 * 10 9 7 23 23 H 1.09007 * 109.48927 * 186.20819 * 11 10 9 24 24 H 1.09003 * 109.49550 * 66.13171 * 11 10 9 25 25 H 1.08995 * 109.47718 * 196.33679 * 13 12 11 26 26 H 1.09001 * 109.47082 * 316.33905 * 13 12 11 27 27 H 1.08998 * 109.49432 * 56.86037 * 18 12 11 28 28 H 1.09005 * 109.49498 * 176.92982 * 18 12 11 29 29 H 1.08999 * 109.62420 * 9.08922 * 19 9 7 30 30 H 1.08995 * 109.63186 * 248.50515 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0735 -1.2117 0.1900 9 7 1.3469 -2.3758 -0.2393 10 6 1.8147 -3.6409 0.3475 11 6 1.9324 -4.6819 -0.7708 12 7 0.6560 -4.7667 -1.4929 13 6 0.6706 -5.8723 -2.4600 14 6 0.4958 -7.1998 -1.7196 15 9 -0.6548 -7.1429 -0.9258 16 9 0.3707 -8.2387 -2.6482 17 9 1.6114 -7.4316 -0.9080 18 6 0.3314 -3.4948 -2.1523 19 6 0.1480 -2.4050 -1.0907 20 1 -0.4849 0.8400 -0.0004 21 1 1.0990 -3.9849 1.0942 22 1 2.7892 -3.4907 0.8120 23 1 2.1713 -5.6539 -0.3392 24 1 2.7222 -4.3862 -1.4615 25 1 -0.1445 -5.7432 -3.1719 26 1 1.6214 -5.8761 -2.9931 27 1 1.1433 -3.2156 -2.8238 28 1 -0.5908 -3.6058 -2.7228 29 1 0.0207 -1.4379 -1.5770 30 1 -0.7278 -2.6302 -0.4823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054171090.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:31 Heat of formation + Delta-G solvation = -141.383030 kcal Electronic energy + Delta-G solvation = -17874.656132 eV Core-core repulsion = 14482.925690 eV Total energy + Delta-G solvation = -3391.730443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.00516 -48.57644 -48.43583 -39.71978 -36.34266 -33.44946 -31.73844 -30.50535 -27.54541 -24.89905 -24.30814 -23.39999 -20.94816 -19.49818 -19.43262 -18.63224 -18.29099 -16.94181 -16.24930 -15.95324 -15.58766 -15.40177 -15.30521 -15.17467 -14.88501 -14.82430 -14.67740 -14.58987 -14.51744 -13.39972 -13.07758 -12.97454 -12.83035 -12.62675 -12.30760 -12.04264 -11.92826 -11.61266 -11.45457 -10.61236 -9.50438 -8.66647 -7.87772 -5.37325 1.47097 1.48601 1.59144 1.80501 2.49513 2.59600 2.96191 3.14491 3.28911 3.54100 3.67642 4.10190 4.18306 4.31303 4.35066 4.56986 4.60697 4.69084 4.86013 4.99566 5.14782 5.35079 5.60698 5.69829 5.93313 5.98500 6.38620 7.13908 7.82073 8.37298 9.19027 Molecular weight = 238.10amu Principal moments of inertia in cm(-1) A = 0.060310 B = 0.006058 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.156890 B = 4621.251027 C = 4763.499330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.615 5.615 10 C 0.145 3.855 11 C 0.038 3.962 12 N -0.543 5.543 13 C 0.011 3.989 14 C 0.460 3.540 15 F -0.185 7.185 16 F -0.183 7.183 17 F -0.189 7.189 18 C 0.054 3.946 19 C 0.183 3.817 20 H 0.251 0.749 21 H 0.012 0.988 22 H 0.062 0.938 23 H 0.097 0.903 24 H 0.038 0.962 25 H 0.137 0.863 26 H 0.098 0.902 27 H 0.035 0.965 28 H 0.093 0.907 29 H 0.063 0.937 30 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -12.779 -6.891 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.091 4.091 12 N -0.268 5.268 13 C -0.119 4.119 14 C 0.405 3.595 15 F -0.167 7.167 16 F -0.165 7.165 17 F -0.170 7.170 18 C -0.074 4.074 19 C 0.057 3.943 20 H 0.060 0.940 21 H 0.030 0.970 22 H 0.081 0.919 23 H 0.115 0.885 24 H 0.056 0.944 25 H 0.155 0.845 26 H 0.116 0.884 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 1.517 -12.758 -6.517 14.406 hybrid contribution 0.678 0.947 -0.083 1.167 sum 2.194 -11.811 -6.600 13.707 Atomic orbital electron populations 1.70153 1.06640 1.25846 1.55665 1.25900 0.96204 1.01540 1.00855 0.85147 0.78483 0.79608 0.76821 1.19115 1.21434 1.21991 1.19563 0.91475 0.85129 1.43262 0.91502 1.44404 1.31114 1.03537 1.54875 1.21094 0.97561 0.85839 0.93611 1.22864 0.88901 1.00603 0.96722 1.61663 1.33431 1.04419 1.27286 1.23303 1.07316 0.86955 0.94293 1.20709 0.73402 0.87604 0.77797 1.93181 1.51028 1.96660 1.75829 1.93172 1.95770 1.61848 1.65708 1.93080 1.53527 1.95294 1.75131 1.22676 1.00447 0.88134 0.96180 1.20672 0.87384 0.95909 0.90300 0.93985 0.96978 0.91928 0.88470 0.94383 0.84530 0.88405 0.94642 0.88868 0.91834 0.98414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.13 11.04 21.65 0.24 -54.89 16 2 C -0.05 -2.76 5.05 84.86 0.43 -2.33 16 3 Si 0.97 44.41 29.57 68.60 2.03 46.44 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 7 C -0.26 -14.50 9.63 84.03 0.81 -13.69 16 8 H 0.07 3.57 7.86 -2.91 -0.02 3.55 16 9 N -0.62 -31.17 3.03 -698.12 -2.12 -33.28 16 10 C 0.14 6.14 6.69 86.35 0.58 6.72 16 11 C 0.04 1.28 5.40 86.39 0.47 1.74 16 12 N -0.54 -17.50 4.37 -895.26 -3.92 -21.41 16 13 C 0.01 0.25 5.12 86.30 0.44 0.69 16 14 C 0.46 11.25 3.27 71.98 0.24 11.49 16 15 F -0.19 -5.38 17.13 44.97 0.77 -4.61 16 16 F -0.18 -4.10 17.32 44.97 0.78 -3.32 16 17 F -0.19 -4.94 14.64 44.97 0.66 -4.28 16 18 C 0.05 1.90 5.58 86.38 0.48 2.38 16 19 C 0.18 8.78 5.37 86.35 0.46 9.25 16 20 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 21 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 22 H 0.06 2.54 7.95 -2.39 -0.02 2.52 16 23 H 0.10 2.92 5.40 -2.38 -0.01 2.91 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.14 2.50 7.76 -2.39 -0.02 2.48 16 26 H 0.10 1.89 7.99 -2.39 -0.02 1.87 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 2.77 7.89 -2.38 -0.02 2.75 16 29 H 0.06 3.40 6.16 -2.39 -0.01 3.38 16 30 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -62.75 256.42 3.49 -59.25 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: 1.15 Total: -0.15 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 3.91 Total: 16.26 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -5.79 Total: -109.58 kcal Atomic # 9 Polarization: -14.42 SS G_CDS: 2.21 Total: -12.21 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -62.75 3.49 -59.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054171090.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.133 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds