Wall clock time and date at job start Sun Mar 29 2020 22:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21580 * 120.00313 * 0.02562 * 14 13 3 16 16 C 1.47520 * 119.99894 * 180.02562 * 14 13 3 17 17 C 1.36817 * 126.94225 * 180.02562 * 16 14 13 18 18 C 1.41261 * 103.84731 * 179.97438 * 17 16 14 19 19 C 1.50701 * 126.70684 * 180.02562 * 18 17 16 20 20 N 1.30129 * 106.58941 * 359.97438 * 18 17 16 21 21 O 1.20892 * 111.98047 * 359.69986 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.08009 * 128.07895 * 0.02562 * 17 16 14 30 30 H 1.09001 * 109.47564 * 89.99595 * 19 18 17 31 31 H 1.09003 * 109.46981 * 209.99817 * 19 18 17 32 32 H 1.09002 * 109.47159 * 329.99278 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4318 16 6 0.0448 3.3235 -2.6275 17 6 -1.1460 3.9404 -2.8984 18 6 -0.9965 4.3951 -4.2275 19 6 -2.0156 5.1507 -5.0410 20 7 0.1934 4.0350 -4.6118 21 8 0.7910 3.4459 -3.7415 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 5.8770 0.4816 2.1128 28 1 2.2720 2.1232 -1.9977 29 1 -2.0006 4.0540 -2.2477 30 1 -1.8794 6.2216 -4.8901 31 1 -1.8860 4.9132 -6.0969 32 1 -3.0184 4.8638 -4.7244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178163.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:57 Heat of formation + Delta-G solvation = 22.218506 kcal Electronic energy + Delta-G solvation = -16921.021410 eV Core-core repulsion = 14078.242002 eV Total energy + Delta-G solvation = -2842.779407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.92366 -39.33495 -35.60994 -34.84136 -32.65742 -32.08970 -31.19007 -28.79826 -27.66691 -24.12039 -22.83687 -22.52842 -20.49042 -19.66773 -18.35118 -17.70497 -16.68251 -15.93766 -15.64068 -14.99709 -14.48671 -13.85188 -13.64555 -13.54720 -13.22874 -13.11450 -12.81121 -12.49315 -12.03966 -11.88560 -11.41334 -11.15936 -10.99555 -10.69848 -10.12659 -9.99634 -9.89036 -9.61008 -9.45947 -9.30745 -8.82119 -8.26690 -6.24810 -4.28555 0.96611 2.04609 2.84360 3.20342 3.32853 3.36082 3.38962 3.71070 4.03495 4.27339 4.57318 5.03163 5.07941 5.15323 5.26823 5.35710 5.52002 5.62708 5.88490 5.95552 5.96222 6.08809 6.56412 6.61525 6.71832 6.84921 7.06112 7.18182 7.39165 7.89734 8.15595 8.38618 8.55114 8.75853 9.34131 10.87071 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044707 B = 0.006183 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.156450 B = 4527.374046 C = 4902.661190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.083 0.917 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.679 5.679 14 C 0.588 3.412 15 O -0.522 6.522 16 C -0.064 4.064 17 C -0.167 4.167 18 C 0.006 3.994 19 C -0.073 4.073 20 N -0.353 5.353 21 O 0.115 5.885 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.268 0.732 28 H 0.403 0.597 29 H 0.181 0.819 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 4.263 -8.626 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.711 3.289 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.326 5.326 14 C 0.370 3.630 15 O -0.399 6.399 16 C -0.130 4.130 17 C -0.190 4.190 18 C -0.152 4.152 19 C -0.131 4.131 20 N -0.056 5.056 21 O 0.044 5.956 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.238 0.762 29 H 0.198 0.802 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.380 4.321 -8.950 15.875 hybrid contribution -0.628 -0.473 0.963 1.243 sum -13.008 3.848 -7.987 15.742 Atomic orbital electron populations 1.21900 0.96922 0.99390 1.02154 1.22311 0.94370 0.99659 1.01556 1.19310 0.96139 0.88677 0.82031 0.92811 1.21009 0.88262 1.40236 1.08138 0.89910 1.24815 0.94879 0.95044 0.97612 1.69859 1.08692 1.44186 1.29795 0.86920 0.80953 0.80015 0.80965 1.20122 1.22052 1.18410 1.46195 1.13842 1.53908 1.18681 1.16613 0.83574 0.79278 0.83546 1.90839 1.51874 1.60142 1.37081 1.24735 0.92975 1.04506 0.90827 1.22799 0.99373 1.00776 0.96054 1.23619 0.94443 1.02605 0.94516 1.20167 0.95159 0.99009 0.98744 1.73723 1.08292 1.10940 1.12636 1.84987 1.38178 1.55283 1.17148 0.93135 0.92706 0.94629 0.92398 0.91943 0.92170 0.76247 0.80206 0.90055 0.90462 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.51 37.16 0.32 -2.50 16 2 C -0.14 -3.00 5.11 -26.74 -0.14 -3.14 16 3 C 0.24 5.51 1.83 -69.09 -0.13 5.39 16 4 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16 5 C -0.54 -14.18 9.31 -34.44 -0.32 -14.50 16 6 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 9 Si 0.88 21.08 24.41 -169.99 -4.15 16.93 16 10 H -0.27 -6.35 6.83 56.52 0.39 -5.97 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -6.08 6.53 56.52 0.37 -5.72 16 13 N -0.68 -13.22 5.02 -55.99 -0.28 -13.50 16 14 C 0.59 10.87 6.38 -12.48 -0.08 10.79 16 15 O -0.52 -10.77 14.05 5.30 0.07 -10.69 16 16 C -0.06 -1.01 7.29 -36.31 -0.26 -1.27 16 17 C -0.17 -2.24 10.91 -38.95 -0.43 -2.67 16 18 C 0.01 0.08 7.31 -82.17 -0.60 -0.53 16 19 C -0.07 -0.60 10.47 36.01 0.38 -0.22 16 20 N -0.35 -5.25 12.04 33.52 0.40 -4.85 16 21 O 0.12 1.79 11.04 15.56 0.17 1.96 16 22 H 0.05 0.95 5.65 -51.93 -0.29 0.66 16 23 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.30 3.22 -51.93 -0.17 1.13 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.40 7.15 8.37 -40.82 -0.34 6.80 16 29 H 0.18 2.05 8.06 -52.48 -0.42 1.62 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 270.34 15.07 4.07 4.07 Total: -1.00 -29.82 270.34 -3.98 -33.80 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -3.69 Total: 3.91 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.36 Total: -6.53 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.90 Total: -43.46 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.25 Total: -8.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.15 Total: 16.93 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.82 -3.98 -33.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178163.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.019 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds