Wall clock time and date at job start Sun Mar 29 2020 22:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21580 * 120.00313 * 0.02562 * 14 13 3 16 16 C 1.47520 * 119.99894 * 180.02562 * 14 13 3 17 17 C 1.36817 * 126.94225 * 180.02562 * 16 14 13 18 18 C 1.41261 * 103.84731 * 179.97438 * 17 16 14 19 19 C 1.50701 * 126.70684 * 180.02562 * 18 17 16 20 20 N 1.30129 * 106.58941 * 359.97438 * 18 17 16 21 21 O 1.20892 * 111.98047 * 359.69986 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.08009 * 128.07895 * 0.02562 * 17 16 14 30 30 H 1.09001 * 109.47564 * 89.99595 * 19 18 17 31 31 H 1.09003 * 109.46981 * 209.99817 * 19 18 17 32 32 H 1.09002 * 109.47159 * 329.99278 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4318 16 6 0.0448 3.3235 -2.6275 17 6 -1.1460 3.9404 -2.8984 18 6 -0.9965 4.3951 -4.2275 19 6 -2.0156 5.1507 -5.0410 20 7 0.1934 4.0350 -4.6118 21 8 0.7910 3.4459 -3.7415 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 5.8770 0.4816 2.1128 28 1 2.2720 2.1232 -1.9977 29 1 -2.0006 4.0540 -2.2477 30 1 -1.8794 6.2216 -4.8901 31 1 -1.8860 4.9132 -6.0969 32 1 -3.0184 4.8638 -4.7244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178163.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:57 Heat of formation + Delta-G solvation = 0.957869 kcal Electronic energy + Delta-G solvation = -16921.943340 eV Core-core repulsion = 14078.242002 eV Total energy + Delta-G solvation = -2843.701338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.01891 -40.89084 -37.29435 -35.88240 -34.47411 -33.70164 -32.55827 -29.64033 -29.45631 -25.61453 -24.32890 -23.86323 -22.06761 -21.16819 -19.71266 -18.83205 -18.44646 -17.61828 -17.03355 -16.55542 -16.17738 -15.29795 -15.05151 -14.79192 -14.23556 -14.17277 -14.08319 -13.80234 -13.68361 -13.63435 -12.99191 -12.77719 -12.41285 -12.36291 -11.85379 -11.50061 -11.26923 -11.17925 -11.10417 -10.86828 -10.79070 -9.94131 -8.37102 -6.44351 -0.25716 1.03177 1.30404 1.38266 1.47607 1.59192 1.96986 2.27445 2.33220 2.98430 3.11145 3.49542 3.90922 4.02072 4.22841 4.31701 4.37317 4.45715 4.71783 4.77259 4.80792 4.83303 5.00788 5.09727 5.19824 5.21649 5.32179 5.49344 5.52105 6.07399 6.53061 6.62513 6.98702 7.06930 7.24556 8.78137 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044707 B = 0.006183 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.156450 B = 4527.374046 C = 4902.661190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.249 3.751 4 H 0.035 0.965 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.258 1.258 11 H -0.294 1.294 12 H -0.253 1.253 13 N -0.683 5.683 14 C 0.595 3.405 15 O -0.543 6.543 16 C -0.086 4.086 17 C -0.150 4.150 18 C 0.018 3.982 19 C -0.074 4.074 20 N -0.372 5.372 21 O 0.098 5.902 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.271 0.729 28 H 0.409 0.591 29 H 0.203 0.797 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 4.364 -9.269 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.053 0.947 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.764 3.236 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.177 1.177 13 N -0.331 5.331 14 C 0.379 3.621 15 O -0.423 6.423 16 C -0.152 4.152 17 C -0.172 4.172 18 C -0.141 4.141 19 C -0.132 4.132 20 N -0.078 5.078 21 O 0.030 5.970 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.245 0.755 29 H 0.220 0.780 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.022 4.417 -9.609 18.371 hybrid contribution 0.164 -0.385 1.037 1.118 sum -14.858 4.032 -8.572 17.621 Atomic orbital electron populations 1.21800 0.94939 1.01010 1.01714 1.22234 0.96091 0.98033 1.01455 1.18974 0.93608 0.89999 0.82966 0.94680 1.21244 0.90166 1.39052 1.07189 0.92725 1.25569 0.95781 0.95713 0.99889 1.69979 1.10459 1.45917 1.30869 0.86020 0.79482 0.80042 0.78065 1.18393 1.22135 1.17743 1.46020 1.14788 1.54466 1.17858 1.16743 0.82629 0.78465 0.84264 1.90818 1.52294 1.60892 1.38266 1.24279 0.94212 1.06332 0.90364 1.23200 0.98797 0.98651 0.96534 1.24320 0.94148 1.01229 0.94365 1.20424 0.94957 0.99325 0.98458 1.73732 1.09551 1.11750 1.12738 1.84981 1.38642 1.56232 1.17176 0.92999 0.93709 0.91945 0.93250 0.91251 0.92003 0.75504 0.77988 0.88417 0.89764 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.51 71.98 0.61 -4.37 16 2 C -0.14 -5.79 5.11 30.59 0.16 -5.63 16 3 C 0.25 11.37 1.83 44.24 0.08 11.45 16 4 H 0.04 1.75 6.63 -2.39 -0.02 1.74 16 5 C -0.54 -28.98 9.31 25.60 0.24 -28.74 16 6 H 0.05 3.17 7.98 -2.91 -0.02 3.15 16 7 C 0.03 1.69 5.45 84.66 0.46 2.15 16 8 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 9 Si 0.94 43.37 24.41 68.60 1.67 45.04 16 10 H -0.26 -11.21 6.83 99.48 0.68 -10.54 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -11.37 6.53 99.48 0.65 -10.72 16 13 N -0.68 -26.73 5.02 -449.32 -2.25 -28.99 16 14 C 0.60 21.65 6.38 86.69 0.55 22.20 16 15 O -0.54 -21.91 14.05 -3.97 -0.06 -21.96 16 16 C -0.09 -2.61 7.29 24.39 0.18 -2.43 16 17 C -0.15 -3.63 10.91 22.68 0.25 -3.38 16 18 C 0.02 0.39 7.31 43.55 0.32 0.71 16 19 C -0.07 -0.92 10.47 71.24 0.75 -0.17 16 20 N -0.37 -10.50 12.04 -48.86 -0.59 -11.09 16 21 O 0.10 2.98 11.04 65.86 0.73 3.71 16 22 H 0.05 1.85 5.65 -2.39 -0.01 1.84 16 23 H 0.04 1.70 7.84 -2.39 -0.02 1.68 16 24 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.05 2.13 3.22 -2.39 -0.01 2.12 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.41 14.84 8.37 -92.71 -0.78 14.07 16 29 H 0.20 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -64.45 270.34 3.69 -60.77 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.29 Total: 16.05 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 3.59 Total: -8.21 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -2.54 Total: -95.40 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.67 Total: -18.25 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.67 Total: 45.04 kcal Total: -64.45 3.69 -60.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178163.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.723 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds