Wall clock time and date at job start Sun Mar 29 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39635 * 126.05872 * 2 1 4 4 C 1.38494 * 105.35544 * 179.85341 * 3 2 1 5 5 C 1.47006 * 126.89502 * 180.14417 * 4 3 2 6 6 O 1.21549 * 120.00088 * 0.30533 * 5 4 3 7 7 O 1.34822 * 119.99519 * 180.31617 * 5 4 3 8 8 C 1.45209 * 116.99446 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.46699 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47145 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99791 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00485 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99477 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00118 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47196 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46867 * 119.99685 * 14 12 10 17 17 H 1.48495 * 109.46773 * 239.99545 * 14 12 10 18 18 N 1.36648 * 106.20877 * 0.40009 * 4 3 2 19 19 C 1.46499 * 125.19545 * 179.75608 * 18 4 3 20 20 N 1.28445 * 109.61122 * 359.73959 * 18 4 3 21 21 H 1.09002 * 109.47152 * 269.71405 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71505 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71486 * 1 2 3 24 24 H 1.07999 * 127.32491 * 359.97438 * 3 2 1 25 25 H 1.09003 * 109.46878 * 300.00006 * 8 7 5 26 26 H 1.09003 * 109.46976 * 59.99686 * 8 7 5 27 27 H 1.08997 * 109.47223 * 299.99885 * 9 8 7 28 28 H 1.08995 * 109.47459 * 59.99879 * 9 8 7 29 29 H 0.97006 * 119.99960 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.47265 * 270.00326 * 19 18 4 31 31 H 1.08999 * 109.46922 * 30.00728 * 19 18 4 32 32 H 1.09005 * 109.46841 * 150.00126 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3289 1.1288 0.0000 4 6 3.6244 0.6392 0.0034 5 6 4.8656 1.4270 0.0078 6 8 4.8147 2.6414 0.0142 7 8 6.0604 0.8023 0.0043 8 6 7.2440 1.6435 0.0084 9 6 8.4952 0.7631 0.0043 10 6 9.7237 1.6361 0.0091 11 1 9.6220 2.7113 0.0141 12 6 10.9773 1.0622 0.0060 13 7 11.1011 -0.2470 -0.0006 14 14 12.5000 2.1443 0.0113 15 1 12.0924 3.5723 0.0180 16 1 13.3091 1.8544 1.2223 17 1 13.3088 1.8665 -1.2027 18 7 3.5174 -0.7230 -0.0039 19 6 4.6447 -1.6586 -0.0086 20 7 2.2774 -1.0580 -0.0057 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3633 -0.8874 -0.5183 23 1 -0.3633 0.8926 -0.5094 24 1 2.0201 2.1637 -0.0004 25 1 7.2422 2.2774 -0.8784 26 1 7.2426 2.2683 0.9016 27 1 8.4967 0.1296 0.8912 28 1 8.4968 0.1381 -0.8886 29 1 11.9831 -0.6509 -0.0024 30 1 4.9247 -1.8851 -1.0374 31 1 5.4925 -1.2086 0.5080 32 1 4.3558 -2.5783 0.5002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062504556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:54 Heat of formation + Delta-G solvation = -22.642008 kcal Electronic energy + Delta-G solvation = -16315.827116 eV Core-core repulsion = 13471.102411 eV Total energy + Delta-G solvation = -2844.724705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.57532 -39.74863 -36.26816 -34.17186 -33.40474 -31.21862 -30.23633 -29.73267 -25.84989 -25.21072 -23.52488 -21.11656 -21.01714 -19.79957 -17.63268 -16.73326 -16.59379 -16.03224 -15.64573 -15.52661 -14.57120 -13.90901 -13.56487 -13.47827 -13.36790 -13.01274 -12.55820 -12.43219 -12.31848 -12.22550 -11.36146 -11.15259 -10.95308 -10.86305 -10.68575 -10.39966 -9.79180 -9.74580 -9.37114 -9.19045 -8.91187 -8.51815 -6.17865 -4.22224 1.12317 2.42243 2.45445 2.93064 3.08490 3.23419 3.31333 3.36225 4.32238 4.36352 4.77439 4.92524 5.15657 5.19421 5.24614 5.37886 5.49972 5.57803 5.68078 5.74146 5.86775 5.96141 5.98463 6.41784 6.51644 6.64718 6.76699 7.44349 7.50849 7.76862 7.90617 8.06791 8.15457 8.83193 9.42876 10.93626 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.058296 B = 0.004479 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.195280 B = 6249.553513 C = 6698.697031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.013 3.987 3 C -0.156 4.156 4 C -0.019 4.019 5 C 0.533 3.467 6 O -0.498 6.498 7 O -0.357 6.357 8 C 0.075 3.925 9 C 0.025 3.975 10 C -0.527 4.527 11 H 0.061 0.939 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.260 5.260 19 C 0.081 3.919 20 N -0.271 5.271 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.165 0.835 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.561 -1.816 0.057 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C -0.184 4.184 4 C -0.145 4.145 5 C 0.375 3.625 6 O -0.385 6.385 7 O -0.274 6.274 8 C 0.003 3.997 9 C -0.012 4.012 10 C -0.565 4.565 11 H 0.079 0.921 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.050 5.050 19 C -0.059 4.059 20 N -0.107 5.107 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.182 0.818 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.239 -2.826 0.049 16.484 hybrid contribution 1.134 1.443 -0.016 1.836 sum -15.106 -1.382 0.033 15.169 Atomic orbital electron populations 1.20064 0.86255 1.03150 1.02741 1.22001 0.97178 0.88581 1.06479 1.22023 0.89264 1.00604 1.06514 1.20866 0.93999 0.84278 1.15372 1.19673 0.83285 0.85849 0.73691 1.90861 1.87806 1.13903 1.45933 1.86588 1.15025 1.42811 1.82961 1.23765 0.80641 0.93931 1.01380 1.19189 0.87856 0.95308 0.98857 1.21000 0.90125 0.93142 1.52262 0.92123 1.24976 0.99249 0.95122 0.94752 1.69969 1.23784 1.09303 1.49752 0.86406 0.82479 0.80655 0.77742 1.19544 1.20794 1.20800 1.45827 1.05283 1.04757 1.49089 1.22485 0.85405 0.92648 1.05346 1.73092 0.89618 1.27973 1.20020 0.90859 0.90998 0.90536 0.81763 0.91930 0.91942 0.95325 0.95295 0.92709 0.89206 0.86663 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.45 36.01 0.38 -0.16 16 2 C 0.01 0.17 7.22 -82.48 -0.60 -0.43 16 3 C -0.16 -2.16 10.78 -38.97 -0.42 -2.58 16 4 C -0.02 -0.31 6.96 -82.07 -0.57 -0.88 16 5 C 0.53 9.71 7.93 34.28 0.27 9.98 16 6 O -0.50 -10.06 16.71 -19.30 -0.32 -10.38 16 7 O -0.36 -6.78 7.69 -40.83 -0.31 -7.10 16 8 C 0.07 1.59 5.42 37.15 0.20 1.80 16 9 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 10 C -0.53 -14.39 9.11 -34.44 -0.31 -14.70 16 11 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 14 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 N -0.26 -3.80 3.75 -63.90 -0.24 -4.04 16 19 C 0.08 0.97 10.81 59.85 0.65 1.62 16 20 N -0.27 -3.88 11.90 33.63 0.40 -3.48 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.12 1.52 6.15 -51.93 -0.32 1.20 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -31.14 287.20 -5.17 -36.31 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -4.09 Total: -3.43 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.65 Total: -3.29 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.90 Total: -32.39 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.64 Total: -17.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.14 -5.17 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062504556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds