Wall clock time and date at job start Sun Mar 29 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39635 * 126.05872 * 2 1 4 4 C 1.38494 * 105.35544 * 179.85341 * 3 2 1 5 5 C 1.47006 * 126.89502 * 180.14417 * 4 3 2 6 6 O 1.21549 * 120.00088 * 0.30533 * 5 4 3 7 7 O 1.34822 * 119.99519 * 180.31617 * 5 4 3 8 8 C 1.45209 * 116.99446 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.46699 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47145 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99791 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00485 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99477 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00118 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47196 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46867 * 119.99685 * 14 12 10 17 17 H 1.48495 * 109.46773 * 239.99545 * 14 12 10 18 18 N 1.36648 * 106.20877 * 0.40009 * 4 3 2 19 19 C 1.46499 * 125.19545 * 179.75608 * 18 4 3 20 20 N 1.28445 * 109.61122 * 359.73959 * 18 4 3 21 21 H 1.09002 * 109.47152 * 269.71405 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.71505 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.71486 * 1 2 3 24 24 H 1.07999 * 127.32491 * 359.97438 * 3 2 1 25 25 H 1.09003 * 109.46878 * 300.00006 * 8 7 5 26 26 H 1.09003 * 109.46976 * 59.99686 * 8 7 5 27 27 H 1.08997 * 109.47223 * 299.99885 * 9 8 7 28 28 H 1.08995 * 109.47459 * 59.99879 * 9 8 7 29 29 H 0.97006 * 119.99960 * 180.02562 * 13 12 10 30 30 H 1.09000 * 109.47265 * 270.00326 * 19 18 4 31 31 H 1.08999 * 109.46922 * 30.00728 * 19 18 4 32 32 H 1.09005 * 109.46841 * 150.00126 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3289 1.1288 0.0000 4 6 3.6244 0.6392 0.0034 5 6 4.8656 1.4270 0.0078 6 8 4.8147 2.6414 0.0142 7 8 6.0604 0.8023 0.0043 8 6 7.2440 1.6435 0.0084 9 6 8.4952 0.7631 0.0043 10 6 9.7237 1.6361 0.0091 11 1 9.6220 2.7113 0.0141 12 6 10.9773 1.0622 0.0060 13 7 11.1011 -0.2470 -0.0006 14 14 12.5000 2.1443 0.0113 15 1 12.0924 3.5723 0.0180 16 1 13.3091 1.8544 1.2223 17 1 13.3088 1.8665 -1.2027 18 7 3.5174 -0.7230 -0.0039 19 6 4.6447 -1.6586 -0.0086 20 7 2.2774 -1.0580 -0.0057 21 1 -0.3633 -0.0051 1.0277 22 1 -0.3633 -0.8874 -0.5183 23 1 -0.3633 0.8926 -0.5094 24 1 2.0201 2.1637 -0.0004 25 1 7.2422 2.2774 -0.8784 26 1 7.2426 2.2683 0.9016 27 1 8.4967 0.1296 0.8912 28 1 8.4968 0.1381 -0.8886 29 1 11.9831 -0.6509 -0.0024 30 1 4.9247 -1.8851 -1.0374 31 1 5.4925 -1.2086 0.5080 32 1 4.3558 -2.5783 0.5002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062504556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:54 Heat of formation + Delta-G solvation = -41.225817 kcal Electronic energy + Delta-G solvation = -16316.632971 eV Core-core repulsion = 13471.102411 eV Total energy + Delta-G solvation = -2845.530560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.67270 -41.26753 -37.84479 -35.52680 -35.08218 -32.66552 -31.91043 -30.58521 -27.43479 -26.45710 -25.01200 -22.89420 -22.22687 -21.12122 -18.95847 -18.41865 -17.92894 -17.82413 -16.98530 -16.78952 -16.41870 -15.08444 -15.06190 -14.76441 -14.39137 -14.33884 -14.02189 -13.49839 -13.30364 -13.27658 -13.08915 -12.89679 -12.65887 -12.63986 -12.17087 -11.73221 -11.61533 -11.56714 -11.40344 -10.62555 -10.35817 -9.91692 -8.28420 -6.40696 -0.13970 1.28326 1.40001 1.41209 1.41943 1.53010 1.58686 1.76948 2.39001 3.06850 3.29905 3.51722 3.96666 4.16426 4.19318 4.28678 4.29817 4.33470 4.62752 4.63024 4.72002 4.91704 4.98134 5.10549 5.11035 5.40940 5.45067 5.45455 5.66821 5.71183 6.05225 6.45539 6.72607 6.92310 7.29140 8.84041 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.058296 B = 0.004479 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.195280 B = 6249.553513 C = 6698.697031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.015 3.985 3 C -0.150 4.150 4 C -0.048 4.048 5 C 0.537 3.463 6 O -0.522 6.522 7 O -0.355 6.355 8 C 0.090 3.910 9 C 0.033 3.967 10 C -0.550 4.550 11 H 0.064 0.936 12 C 0.009 3.991 13 N -0.924 5.924 14 Si 0.970 3.030 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.276 1.276 18 N -0.265 5.265 19 C 0.077 3.923 20 N -0.280 5.280 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.182 0.818 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.268 0.732 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 -1.347 0.046 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 C -0.178 4.178 4 C -0.174 4.174 5 C 0.381 3.619 6 O -0.410 6.410 7 O -0.272 6.272 8 C 0.017 3.983 9 C -0.005 4.005 10 C -0.588 4.588 11 H 0.082 0.918 12 C -0.190 4.190 13 N -0.563 5.563 14 Si 0.794 3.206 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.202 1.202 18 N -0.055 5.055 19 C -0.062 4.062 20 N -0.116 5.116 21 H 0.107 0.893 22 H 0.098 0.902 23 H 0.115 0.885 24 H 0.199 0.801 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.314 -2.365 0.038 17.475 hybrid contribution 1.343 1.238 -0.011 1.826 sum -15.971 -1.127 0.028 16.011 Atomic orbital electron populations 1.20259 0.83076 1.04605 1.04156 1.22711 0.99004 0.87526 1.04748 1.22392 0.88542 1.01876 1.05025 1.20777 0.93453 0.85107 1.18016 1.19992 0.83360 0.85845 0.72732 1.90839 1.88001 1.14853 1.47301 1.86591 1.15020 1.42284 1.83265 1.23318 0.80452 0.93070 1.01448 1.18983 0.89344 0.95089 0.97035 1.21394 0.91303 0.93656 1.52412 0.91764 1.25897 1.02549 0.96484 0.94117 1.70077 1.24821 1.11035 1.50410 0.85314 0.78301 0.78974 0.77963 1.18715 1.20139 1.20158 1.46029 1.05862 1.04462 1.49131 1.22602 0.84560 0.93032 1.06009 1.73118 0.89570 1.28716 1.20203 0.89342 0.90214 0.88458 0.80101 0.91831 0.91815 0.97084 0.97100 0.92348 0.88400 0.88228 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.45 71.24 0.74 -0.11 16 2 C 0.02 0.35 7.22 43.04 0.31 0.67 16 3 C -0.15 -3.90 10.78 22.67 0.24 -3.66 16 4 C -0.05 -1.51 6.96 40.75 0.28 -1.23 16 5 C 0.54 19.61 7.93 70.12 0.56 20.16 16 6 O -0.52 -21.04 16.71 19.67 0.33 -20.71 16 7 O -0.36 -13.71 7.69 -57.35 -0.44 -14.15 16 8 C 0.09 3.88 5.42 71.98 0.39 4.27 16 9 C 0.03 1.67 5.35 29.85 0.16 1.83 16 10 C -0.55 -30.28 9.11 25.60 0.23 -30.04 16 11 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 12 C 0.01 0.49 5.46 84.66 0.46 0.95 16 13 N -0.92 -53.72 13.29 21.45 0.28 -53.43 16 14 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 18 N -0.26 -7.54 3.75 -356.06 -1.34 -8.88 16 19 C 0.08 1.82 10.81 127.77 1.38 3.20 16 20 N -0.28 -7.55 11.90 -47.51 -0.57 -8.12 16 21 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 25 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.10 2.68 6.15 -2.39 -0.01 2.67 16 32 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -65.93 287.20 6.18 -59.75 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.11 Total: 4.70 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.77 Total: -3.95 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.62 Total: -70.43 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.11 Total: -34.87 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -65.93 6.18 -59.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062504556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.525 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds