Wall clock time and date at job start Sun Mar 29 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41255 * 126.71091 * 2 1 4 4 C 1.36822 * 103.84948 * 180.02562 * 3 2 1 5 5 C 1.47511 * 126.94395 * 179.97438 * 4 3 2 6 6 O 1.21579 * 120.00299 * 4.65414 * 5 4 3 7 7 N 1.34780 * 120.00052 * 184.65923 * 5 4 3 8 8 C 1.46503 * 119.99793 * 4.12956 * 7 5 4 9 9 C 1.46502 * 120.00328 * 184.13894 * 7 5 4 10 10 H 1.09003 * 109.46572 * 359.97438 * 9 7 5 11 11 C 1.52994 * 109.47382 * 119.99481 * 9 7 5 12 12 C 1.50700 * 109.46881 * 239.99857 * 9 7 5 13 13 H 1.08003 * 119.99838 * 359.97438 * 12 9 7 14 14 C 1.37876 * 119.99960 * 179.97438 * 12 9 7 15 15 N 1.31512 * 119.99773 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99764 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46995 * 89.99904 * 16 14 12 18 18 H 1.48504 * 109.46903 * 209.99587 * 16 14 12 19 19 H 1.48495 * 109.47345 * 329.99506 * 16 14 12 20 20 O 1.34643 * 106.11414 * 0.23639 * 4 3 2 21 21 N 1.20896 * 111.46101 * 359.56795 * 20 4 3 22 22 H 1.08991 * 109.47036 * 89.99503 * 1 2 3 23 23 H 1.08996 * 109.47173 * 210.00119 * 1 2 3 24 24 H 1.09011 * 109.46219 * 330.00057 * 1 2 3 25 25 H 1.07998 * 128.07393 * 0.03251 * 3 2 1 26 26 H 1.08996 * 109.47141 * 84.24234 * 8 7 5 27 27 H 1.09000 * 109.47109 * 324.24200 * 8 7 5 28 28 H 1.09001 * 109.47307 * 204.24134 * 8 7 5 29 29 H 1.09000 * 109.47176 * 299.99738 * 11 9 7 30 30 H 1.08997 * 109.47042 * 60.00256 * 11 9 7 31 31 H 1.09004 * 109.46816 * 180.02562 * 11 9 7 32 32 H 0.97005 * 119.99287 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1324 0.0000 4 6 3.6121 0.6008 -0.0006 5 6 4.8871 1.3427 -0.0014 6 8 4.8848 2.5555 0.0839 7 7 6.0546 0.6761 -0.0967 8 6 6.0553 -0.7760 -0.2905 9 6 7.3231 1.4036 -0.0064 10 1 7.1233 2.4657 0.1361 11 6 8.1321 0.8729 1.1787 12 6 8.1068 1.2065 -1.2783 13 1 7.7009 0.5996 -2.0742 14 6 9.3421 1.8008 -1.4260 15 7 9.8361 2.5402 -0.4571 16 14 10.3139 1.5559 -3.0024 17 1 9.9606 2.6231 -3.9726 18 1 11.7671 1.6203 -2.7032 19 1 9.9868 0.2295 -3.5846 20 8 3.4540 -0.7363 -0.0062 21 7 2.2847 -1.0434 -0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3632 0.8901 0.5139 25 1 2.0680 2.1745 0.0005 26 1 5.9468 -1.0011 -1.3514 27 1 5.2248 -1.2166 0.2611 28 1 6.9947 -1.1909 0.0747 29 1 7.5652 1.0155 2.0987 30 1 8.3318 -0.1891 1.0359 31 1 9.0757 1.4145 1.2461 32 1 10.7051 2.9586 -0.5612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094722.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:45 Heat of formation + Delta-G solvation = 12.453051 kcal Electronic energy + Delta-G solvation = -17020.185048 eV Core-core repulsion = 14176.982179 eV Total energy + Delta-G solvation = -2843.202869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.01708 -40.78825 -37.42435 -35.89081 -34.88280 -33.15641 -31.19751 -29.58303 -27.83928 -27.30664 -25.42761 -23.87294 -22.27435 -20.51080 -18.86451 -18.65712 -18.38657 -17.58883 -17.04292 -16.33229 -16.10420 -15.10792 -14.80392 -14.54050 -14.29337 -14.18210 -14.05656 -13.64717 -13.49436 -12.99892 -12.90148 -12.75031 -12.63289 -12.35421 -12.19479 -12.11391 -11.26152 -11.19344 -11.10363 -10.79917 -10.53685 -9.51730 -8.15799 -6.32046 -0.26036 1.03370 1.43635 1.44271 1.53150 1.56966 1.94275 2.26741 2.45238 3.10546 3.13116 3.35622 3.81013 3.97971 4.32990 4.42671 4.66129 4.71970 4.72782 4.76990 4.84130 4.88334 5.00802 5.02815 5.22907 5.39665 5.49642 5.62622 5.95918 6.11048 6.52274 6.71336 6.92533 7.09323 7.39071 8.88968 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044287 B = 0.005908 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.081312 B = 4738.401975 C = 4809.769794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.022 3.978 3 C -0.156 4.156 4 C -0.081 4.081 5 C 0.581 3.419 6 O -0.566 6.566 7 N -0.581 5.581 8 C 0.078 3.922 9 C 0.260 3.740 10 H 0.020 0.980 11 C -0.135 4.135 12 C -0.542 4.542 13 H 0.060 0.940 14 C 0.020 3.980 15 N -0.914 5.914 16 Si 0.965 3.035 17 H -0.282 1.282 18 H -0.279 1.279 19 H -0.264 1.264 20 O 0.104 5.896 21 N -0.373 5.373 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.197 0.803 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.024 0.976 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.167 -6.948 0.896 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C -0.178 4.178 4 C -0.146 4.146 5 C 0.367 3.633 6 O -0.447 6.447 7 N -0.310 5.310 8 C -0.064 4.064 9 C 0.159 3.841 10 H 0.038 0.962 11 C -0.194 4.194 12 C -0.580 4.580 13 H 0.078 0.922 14 C -0.181 4.181 15 N -0.553 5.553 16 Si 0.790 3.210 17 H -0.208 1.208 18 H -0.204 1.204 19 H -0.188 1.188 20 O 0.038 5.962 21 N -0.080 5.080 22 H 0.116 0.884 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.214 0.786 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.160 -7.549 0.995 16.078 hybrid contribution 0.881 1.007 -0.703 1.512 sum -13.279 -6.541 0.293 14.806 Atomic orbital electron populations 1.20422 0.82128 1.05495 1.05045 1.24244 1.00978 0.87150 1.01255 1.23183 0.89329 1.02836 1.02457 1.24164 0.97068 0.84280 1.09121 1.17082 0.82044 0.86028 0.78172 1.90783 1.86385 1.13811 1.53756 1.48256 1.06066 1.09783 1.66858 1.22035 1.04010 0.78308 1.02057 1.18770 0.78532 0.91475 0.95306 0.96167 1.21921 1.01453 1.00621 0.95378 1.21519 1.02943 1.32202 1.01343 0.92163 1.25680 0.98236 0.94336 0.99807 1.70002 1.19068 1.32623 1.33599 0.85454 0.77645 0.78715 0.79195 1.20783 1.20433 1.18789 1.85135 1.21287 1.21753 1.68033 1.73672 0.89878 1.25536 1.18888 0.88365 0.89508 0.87578 0.78593 0.92214 0.89361 0.89440 0.95657 0.93077 0.90814 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.47 71.24 0.75 -0.25 16 2 C 0.02 0.53 7.31 43.55 0.32 0.85 16 3 C -0.16 -4.31 10.92 22.68 0.25 -4.06 16 4 C -0.08 -2.75 6.94 24.38 0.17 -2.58 16 5 C 0.58 25.00 7.67 86.69 0.66 25.66 16 6 O -0.57 -28.35 16.25 -3.97 -0.06 -28.41 16 7 N -0.58 -25.31 2.75 -830.60 -2.29 -27.59 16 8 C 0.08 2.69 9.08 127.77 1.16 3.85 16 9 C 0.26 13.41 2.62 44.24 0.12 13.52 16 10 H 0.02 1.23 6.91 -2.39 -0.02 1.21 16 11 C -0.14 -6.38 8.96 71.98 0.64 -5.74 16 12 C -0.54 -29.19 8.37 25.60 0.21 -28.98 16 13 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 14 C 0.02 1.05 5.30 84.65 0.45 1.50 16 15 N -0.91 -51.61 11.32 21.45 0.24 -51.37 16 16 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 O 0.10 3.26 7.89 65.80 0.52 3.78 16 21 N -0.37 -10.68 12.04 -48.85 -0.59 -11.27 16 22 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.20 4.64 8.06 -2.91 -0.02 4.61 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 2.65 5.10 -2.39 -0.01 2.63 16 28 H 0.09 2.92 6.44 -2.39 -0.02 2.90 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 2.18 6.67 -2.39 -0.02 2.16 16 31 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 32 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -65.62 274.67 5.71 -59.91 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.13 Total: 6.59 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.73 Total: 3.78 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -2.63 Total: -90.24 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.45 Total: -24.64 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.62 5.71 -59.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094722.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.361 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds