Wall clock time and date at job start Sun Mar 29 2020 21:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48497 * 109.46938 * 273.96965 * 3 2 1 5 5 H 1.48507 * 109.47218 * 33.96721 * 3 2 1 6 6 H 1.48494 * 109.47204 * 153.97062 * 3 2 1 7 7 C 1.38949 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00043 * 342.74505 * 7 2 1 9 9 N 1.37098 * 119.99561 * 162.75012 * 7 2 1 10 10 C 1.34775 * 120.00251 * 319.88589 * 9 7 2 11 11 O 1.21293 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00113 * 179.97438 * 10 9 7 13 13 H 1.09004 * 110.22185 * 320.48694 * 12 10 9 14 14 C 1.54483 * 110.31582 * 82.45893 * 12 10 9 15 15 C 1.54631 * 101.76484 * 93.62519 * 14 12 10 16 16 C 1.51287 * 104.19646 * 24.79242 * 15 14 12 17 17 O 1.21278 * 124.93838 * 163.71172 * 16 15 14 18 18 N 1.34417 * 110.11653 * 343.75548 * 16 15 14 19 19 C 1.46506 * 119.99768 * 139.89231 * 9 7 2 20 20 C 1.52994 * 117.49972 * 2.17224 * 19 9 7 21 21 C 1.53000 * 117.49717 * 293.54851 * 19 9 7 22 22 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.97449 * 335.50579 * 14 12 10 24 24 H 1.08997 * 110.97262 * 211.73744 * 14 12 10 25 25 H 1.09008 * 110.48243 * 266.12099 * 15 14 12 26 26 H 1.08991 * 110.49003 * 143.47653 * 15 14 12 27 27 H 0.96995 * 124.35119 * 179.60842 * 18 16 15 28 28 H 1.08997 * 115.54858 * 147.88133 * 19 9 7 29 29 H 1.09006 * 117.50088 * 0.02562 * 20 19 9 30 30 H 1.09004 * 117.50044 * 145.02055 * 20 19 9 31 31 H 1.09001 * 117.49439 * 214.97868 * 21 19 9 32 32 H 1.08996 * 117.49765 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4117 2.0948 -1.3967 5 1 1.4901 2.6270 0.7823 6 1 3.5851 1.4173 0.6144 7 6 2.0088 -1.2034 0.0005 8 1 1.5052 -2.1175 0.2784 9 7 3.3335 -1.2302 -0.3515 10 6 3.7742 -0.4727 -1.3755 11 8 2.9988 0.2331 -1.9852 12 6 5.2304 -0.5018 -1.7621 13 1 5.8562 -0.5414 -0.8705 14 6 5.5195 -1.7161 -2.6723 15 6 5.3640 -1.0982 -4.0812 16 6 5.6421 0.3743 -3.8733 17 8 5.8972 1.1645 -4.7572 18 7 5.5661 0.6791 -2.5663 19 6 4.2701 -2.0825 0.3852 20 6 3.6997 -2.9568 1.5037 21 6 4.5456 -1.7293 1.8482 22 1 -0.4850 0.8401 -0.0004 23 1 4.7880 -2.5078 -2.5106 24 1 6.5331 -2.0863 -2.5185 25 1 4.3499 -1.2462 -4.4528 26 1 6.0903 -1.5302 -4.7695 27 1 5.7138 1.5656 -2.2016 28 1 5.0964 -2.4876 -0.1990 29 1 2.6275 -2.8983 1.6911 30 1 4.1506 -3.9376 1.6555 31 1 5.5531 -1.9026 2.2265 32 1 4.0297 -0.8632 2.2626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:32 Heat of formation + Delta-G solvation = -21.791360 kcal Electronic energy + Delta-G solvation = -17787.971519 eV Core-core repulsion = 14943.283700 eV Total energy + Delta-G solvation = -2844.687818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48777 -38.72619 -36.65977 -35.68329 -33.00803 -31.64938 -31.05362 -28.20332 -24.85557 -22.74944 -21.91816 -21.25137 -20.34506 -19.50858 -17.61754 -17.09397 -16.42439 -15.50505 -15.23348 -14.85437 -14.15552 -13.93375 -13.61837 -13.44013 -13.13501 -12.90321 -12.53681 -12.47163 -11.81281 -11.37770 -11.24376 -11.05519 -10.82799 -10.43390 -10.13250 -10.07110 -9.74692 -9.65185 -9.38661 -8.60956 -8.34166 -7.61898 -6.27012 -4.06639 2.85517 3.11118 3.37082 3.52553 3.62809 3.67306 4.22678 4.36263 4.49560 4.59249 4.70880 4.89106 5.06390 5.27317 5.29693 5.40708 5.48385 5.59256 5.61153 5.74627 5.93362 6.04464 6.05713 6.16212 6.54294 6.74483 6.96343 7.26081 7.73034 7.82305 8.48907 8.64027 8.76175 9.30884 9.63881 10.75912 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.011782 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.922424 B = 2375.936403 C = 3072.638832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.088 3.912 3 Si 0.923 3.077 4 H -0.251 1.251 5 H -0.314 1.314 6 H -0.286 1.286 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.427 5.427 10 C 0.428 3.572 11 O -0.528 6.528 12 C 0.115 3.885 13 H 0.101 0.899 14 C -0.118 4.118 15 C -0.153 4.153 16 C 0.529 3.471 17 O -0.547 6.547 18 N -0.707 5.707 19 C 0.057 3.943 20 C -0.170 4.170 21 C -0.199 4.199 22 H 0.274 0.726 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.409 0.591 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.369 -5.831 1.029 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.122 4.122 3 Si 0.756 3.244 4 H -0.177 1.177 5 H -0.245 1.245 6 H -0.212 1.212 7 C -0.474 4.474 8 H 0.117 0.883 9 N -0.148 5.148 10 C 0.217 3.783 11 O -0.411 6.411 12 C 0.005 3.995 13 H 0.119 0.881 14 C -0.157 4.157 15 C -0.193 4.193 16 C 0.316 3.684 17 O -0.425 6.425 18 N -0.360 5.360 19 C -0.049 4.049 20 C -0.207 4.207 21 C -0.238 4.238 22 H 0.083 0.917 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.118 0.882 27 H 0.247 0.753 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.893 -5.111 0.193 12.946 hybrid contribution 0.286 1.155 0.536 1.305 sum 12.179 -3.957 0.729 12.826 Atomic orbital electron populations 1.69717 1.06840 1.28383 1.44887 1.25351 0.95043 0.99702 0.92078 0.86155 0.78414 0.81786 0.78014 1.17718 1.24508 1.21204 1.18809 0.82338 0.95928 1.50347 0.88307 1.43143 1.07611 1.38459 1.25561 1.20480 0.89620 0.85899 0.82319 1.90553 1.55995 1.41079 1.53462 1.21626 0.95942 0.86347 0.95609 0.88145 1.22561 1.03346 0.96582 0.93163 1.22304 1.05225 0.93307 0.98473 1.20781 0.74545 0.90928 0.82112 1.90704 1.50194 1.56044 1.45510 1.45901 1.70392 1.11835 1.07916 1.21915 0.95936 0.99108 0.87931 1.23132 1.01697 0.93904 1.01993 1.23294 1.00298 1.00500 0.99688 0.91667 0.88481 0.89405 0.87343 0.88160 0.75274 0.86902 0.87014 0.89264 0.89343 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.87 13.96 55.50 0.77 -25.09 16 2 C 0.09 2.51 4.92 -17.47 -0.09 2.43 16 3 Si 0.92 24.31 24.47 -169.99 -4.16 20.15 16 4 H -0.25 -7.05 6.11 56.52 0.35 -6.70 16 5 H -0.31 -8.26 7.11 56.52 0.40 -7.85 16 6 H -0.29 -7.10 7.10 56.52 0.40 -6.70 16 7 C -0.35 -9.24 8.76 -14.93 -0.13 -9.37 16 8 H 0.10 2.73 6.98 -52.49 -0.37 2.36 16 9 N -0.43 -9.38 2.56 -107.73 -0.28 -9.66 16 10 C 0.43 9.38 5.03 -10.99 -0.06 9.32 16 11 O -0.53 -14.07 11.40 5.55 0.06 -14.01 16 12 C 0.11 1.84 2.99 -68.16 -0.20 1.63 16 13 H 0.10 1.35 7.28 -51.93 -0.38 0.97 16 14 C -0.12 -1.47 5.88 -25.10 -0.15 -1.61 16 15 C -0.15 -2.14 6.85 -26.74 -0.18 -2.32 16 16 C 0.53 9.47 8.43 -10.86 -0.09 9.38 16 17 O -0.55 -11.58 18.03 5.56 0.10 -11.48 16 18 N -0.71 -12.07 5.47 -53.88 -0.29 -12.36 16 19 C 0.06 0.93 5.49 -67.93 -0.37 0.56 16 20 C -0.17 -2.60 9.79 -26.73 -0.26 -2.86 16 21 C -0.20 -3.03 10.37 -26.73 -0.28 -3.31 16 22 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 23 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.11 1.63 8.14 -51.92 -0.42 1.21 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.41 6.67 8.96 -40.82 -0.37 6.31 16 28 H 0.11 1.44 6.46 -51.93 -0.34 1.10 16 29 H 0.11 2.02 6.50 -51.93 -0.34 1.68 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 265.86 15.07 4.01 4.01 Total: -1.00 -34.82 265.86 -5.51 -40.33 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.92 Total: 4.26 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.81 Total: 3.84 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.20 Total: -47.11 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.16 Total: -25.48 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.16 Total: 20.15 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.82 -5.51 -40.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.543 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds