Wall clock time and date at job start Sun Mar 29 2020 21:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48497 * 109.46938 * 273.96965 * 3 2 1 5 5 H 1.48507 * 109.47218 * 33.96721 * 3 2 1 6 6 H 1.48494 * 109.47204 * 153.97062 * 3 2 1 7 7 C 1.38949 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00043 * 342.74505 * 7 2 1 9 9 N 1.37098 * 119.99561 * 162.75012 * 7 2 1 10 10 C 1.34775 * 120.00251 * 319.88589 * 9 7 2 11 11 O 1.21293 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00113 * 179.97438 * 10 9 7 13 13 H 1.09004 * 110.22185 * 320.48694 * 12 10 9 14 14 C 1.54483 * 110.31582 * 82.45893 * 12 10 9 15 15 C 1.54631 * 101.76484 * 93.62519 * 14 12 10 16 16 C 1.51287 * 104.19646 * 24.79242 * 15 14 12 17 17 O 1.21278 * 124.93838 * 163.71172 * 16 15 14 18 18 N 1.34417 * 110.11653 * 343.75548 * 16 15 14 19 19 C 1.46506 * 119.99768 * 139.89231 * 9 7 2 20 20 C 1.52994 * 117.49972 * 2.17224 * 19 9 7 21 21 C 1.53000 * 117.49717 * 293.54851 * 19 9 7 22 22 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.97449 * 335.50579 * 14 12 10 24 24 H 1.08997 * 110.97262 * 211.73744 * 14 12 10 25 25 H 1.09008 * 110.48243 * 266.12099 * 15 14 12 26 26 H 1.08991 * 110.49003 * 143.47653 * 15 14 12 27 27 H 0.96995 * 124.35119 * 179.60842 * 18 16 15 28 28 H 1.08997 * 115.54858 * 147.88133 * 19 9 7 29 29 H 1.09006 * 117.50088 * 0.02562 * 20 19 9 30 30 H 1.09004 * 117.50044 * 145.02055 * 20 19 9 31 31 H 1.09001 * 117.49439 * 214.97868 * 21 19 9 32 32 H 1.08996 * 117.49765 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4117 2.0948 -1.3967 5 1 1.4901 2.6270 0.7823 6 1 3.5851 1.4173 0.6144 7 6 2.0088 -1.2034 0.0005 8 1 1.5052 -2.1175 0.2784 9 7 3.3335 -1.2302 -0.3515 10 6 3.7742 -0.4727 -1.3755 11 8 2.9988 0.2331 -1.9852 12 6 5.2304 -0.5018 -1.7621 13 1 5.8562 -0.5414 -0.8705 14 6 5.5195 -1.7161 -2.6723 15 6 5.3640 -1.0982 -4.0812 16 6 5.6421 0.3743 -3.8733 17 8 5.8972 1.1645 -4.7572 18 7 5.5661 0.6791 -2.5663 19 6 4.2701 -2.0825 0.3852 20 6 3.6997 -2.9568 1.5037 21 6 4.5456 -1.7293 1.8482 22 1 -0.4850 0.8401 -0.0004 23 1 4.7880 -2.5078 -2.5106 24 1 6.5331 -2.0863 -2.5185 25 1 4.3499 -1.2462 -4.4528 26 1 6.0903 -1.5302 -4.7695 27 1 5.7138 1.5656 -2.2016 28 1 5.0964 -2.4876 -0.1990 29 1 2.6275 -2.8983 1.6911 30 1 4.1506 -3.9376 1.6555 31 1 5.5531 -1.9026 2.2265 32 1 4.0297 -0.8632 2.2626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:32 Heat of formation + Delta-G solvation = -49.743417 kcal Electronic energy + Delta-G solvation = -17789.183611 eV Core-core repulsion = 14943.283700 eV Total energy + Delta-G solvation = -2845.899911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.92138 -40.28085 -38.12842 -37.16640 -34.89450 -33.47307 -32.25221 -29.67744 -26.64886 -24.11354 -23.11317 -22.60604 -21.68521 -21.14809 -19.30439 -18.47825 -17.99180 -17.22886 -16.74747 -16.33613 -15.69816 -15.52949 -15.12572 -14.93149 -14.70103 -14.50181 -14.20646 -13.64131 -13.51109 -12.93199 -12.65455 -12.27580 -12.20103 -12.09074 -11.97642 -11.57085 -11.19976 -11.09245 -10.91681 -10.77303 -9.95834 -9.40750 -8.43449 -6.18687 1.14384 1.23927 1.47010 1.50267 1.82074 2.25294 2.39919 2.69649 2.95932 3.23624 3.39833 3.55991 3.73405 3.99221 4.12144 4.23052 4.31883 4.35780 4.49108 4.79120 4.95845 4.96519 5.03279 5.09438 5.29081 5.51738 5.64079 5.68385 5.85326 5.94641 6.72201 6.85542 7.14556 7.31976 7.81543 8.62528 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.011782 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.922424 B = 2375.936403 C = 3072.638832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.036 3.964 3 Si 0.973 3.027 4 H -0.283 1.283 5 H -0.322 1.322 6 H -0.262 1.262 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.443 5.443 10 C 0.424 3.576 11 O -0.584 6.584 12 C 0.119 3.881 13 H 0.143 0.857 14 C -0.105 4.105 15 C -0.150 4.150 16 C 0.518 3.482 17 O -0.589 6.589 18 N -0.709 5.709 19 C 0.041 3.959 20 C -0.170 4.170 21 C -0.188 4.188 22 H 0.270 0.730 23 H 0.101 0.899 24 H 0.144 0.856 25 H 0.091 0.909 26 H 0.136 0.864 27 H 0.408 0.592 28 H 0.166 0.834 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.342 -7.979 1.644 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.167 4.167 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.253 1.253 6 H -0.186 1.186 7 C -0.458 4.458 8 H 0.095 0.905 9 N -0.163 5.163 10 C 0.214 3.786 11 O -0.470 6.470 12 C 0.010 3.990 13 H 0.161 0.839 14 C -0.143 4.143 15 C -0.190 4.190 16 C 0.306 3.694 17 O -0.471 6.471 18 N -0.361 5.361 19 C -0.062 4.062 20 C -0.207 4.207 21 C -0.226 4.226 22 H 0.079 0.921 23 H 0.119 0.881 24 H 0.162 0.838 25 H 0.109 0.891 26 H 0.154 0.846 27 H 0.246 0.754 28 H 0.184 0.816 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.907 -7.303 0.868 17.524 hybrid contribution -0.924 1.730 0.320 1.987 sum 14.983 -5.573 1.188 16.030 Atomic orbital electron populations 1.69812 1.08045 1.28437 1.48854 1.25967 0.95461 1.02176 0.93110 0.85333 0.78659 0.79457 0.75923 1.21167 1.25321 1.18605 1.18721 0.84906 0.94395 1.47790 0.90526 1.43337 1.06926 1.39454 1.26555 1.21702 0.92136 0.83731 0.80984 1.90522 1.58274 1.43213 1.54969 1.21840 0.91606 0.87624 0.97954 0.83912 1.22737 1.06701 0.94591 0.90224 1.22370 1.05206 0.90663 1.00740 1.21534 0.73560 0.92446 0.81839 1.90675 1.52066 1.57646 1.46667 1.46081 1.69480 1.12451 1.08091 1.22426 0.96241 0.98845 0.88732 1.23168 0.99921 0.96219 1.01416 1.23360 1.02220 0.98945 0.98081 0.92114 0.88081 0.83813 0.89082 0.84638 0.75393 0.81647 0.91012 0.84961 0.84538 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.42 13.96 21.66 0.30 -57.11 16 2 C 0.04 2.15 4.92 84.93 0.42 2.57 16 3 Si 0.97 51.84 24.47 68.60 1.68 53.52 16 4 H -0.28 -16.46 6.11 99.48 0.61 -15.85 16 5 H -0.32 -17.16 7.11 99.48 0.71 -16.45 16 6 H -0.26 -12.52 7.10 99.48 0.71 -11.81 16 7 C -0.33 -17.79 8.76 84.04 0.74 -17.05 16 8 H 0.08 4.39 6.98 -2.91 -0.02 4.37 16 9 N -0.44 -18.59 2.56 -613.15 -1.57 -20.15 16 10 C 0.42 17.74 5.03 87.66 0.44 18.18 16 11 O -0.58 -31.30 11.40 -3.07 -0.04 -31.34 16 12 C 0.12 3.28 2.99 44.70 0.13 3.41 16 13 H 0.14 2.85 7.28 -2.38 -0.02 2.83 16 14 C -0.10 -1.97 5.88 31.65 0.19 -1.79 16 15 C -0.15 -3.66 6.85 30.59 0.21 -3.45 16 16 C 0.52 17.52 8.43 87.90 0.74 18.26 16 17 O -0.59 -24.67 18.03 -3.02 -0.05 -24.73 16 18 N -0.71 -22.41 5.47 -442.96 -2.42 -24.83 16 19 C 0.04 1.16 5.49 44.99 0.25 1.41 16 20 C -0.17 -4.62 9.79 30.59 0.30 -4.32 16 21 C -0.19 -4.87 10.37 30.59 0.32 -4.56 16 22 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 23 H 0.10 1.93 7.79 -2.39 -0.02 1.91 16 24 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 26 H 0.14 2.35 8.14 -2.39 -0.02 2.34 16 27 H 0.41 12.64 8.96 -92.71 -0.83 11.80 16 28 H 0.17 2.92 6.46 -2.39 -0.02 2.91 16 29 H 0.07 2.56 6.50 -2.38 -0.02 2.55 16 30 H 0.13 2.46 8.14 -2.38 -0.02 2.45 16 31 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -83.17 265.86 1.85 -81.32 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.22 Total: 10.66 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 3.73 Total: 12.66 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -3.69 Total: -102.10 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -0.09 Total: -56.06 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.68 Total: 53.52 kcal Total: -83.17 1.85 -81.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal (2) G-P(sol) polarization free energy of solvation -83.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds