Wall clock time and date at job start Sun Mar 29 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48505 * 109.46787 * 269.99831 * 3 2 1 5 5 H 1.48508 * 109.46864 * 29.99358 * 3 2 1 6 6 H 1.48493 * 109.47592 * 149.99669 * 3 2 1 7 7 C 1.37878 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00078 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00278 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.35004 * 124.17248 * 270.00008 * 10 9 7 12 12 O 1.21234 * 127.18601 * 357.41021 * 11 10 9 13 13 C 1.51216 * 105.63187 * 177.40863 * 11 10 9 14 14 H 1.09005 * 112.34341 * 246.60877 * 13 11 10 15 15 C 1.53174 * 110.80349 * 121.19675 * 13 11 10 16 16 C 1.53188 * 108.83351 * 195.09852 * 15 13 11 17 17 C 1.53209 * 110.34994 * 63.27383 * 16 15 13 18 18 C 1.53653 * 109.79018 * 297.80836 * 17 16 15 19 19 N 1.46522 * 107.35751 * 51.05597 * 18 17 16 20 20 C 1.33515 * 129.69809 * 126.58358 * 19 18 17 21 21 O 1.21535 * 124.00574 * 10.73615 * 20 19 18 22 22 H 0.97006 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47393 * 59.99991 * 9 7 2 24 24 H 1.08999 * 109.46966 * 300.00652 * 9 7 2 25 25 H 1.09002 * 109.59852 * 314.94464 * 15 13 11 26 26 H 1.09006 * 109.59949 * 75.25892 * 15 13 11 27 27 H 1.08995 * 109.26897 * 183.71334 * 16 15 13 28 28 H 1.08995 * 109.26868 * 303.18067 * 16 15 13 29 29 H 1.09001 * 109.38360 * 177.70835 * 17 16 15 30 30 H 1.08996 * 109.34485 * 57.88025 * 17 16 15 31 31 H 1.09002 * 109.88163 * 291.59753 * 18 17 16 32 32 H 1.09000 * 109.94081 * 170.55390 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.2522 -3.2905 1.1179 12 8 4.1640 -2.9116 2.2661 13 6 4.6678 -4.6628 0.6377 14 1 3.9455 -5.4330 0.9087 15 6 6.0731 -5.0115 1.1375 16 6 6.5992 -6.2081 0.3388 17 6 6.7381 -5.8406 -1.1421 18 6 5.3604 -5.4823 -1.7206 19 7 4.7565 -4.4894 -0.8282 20 6 4.2519 -3.2856 -1.1089 21 8 4.0461 -2.8808 -2.2362 22 1 -0.4851 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6804 -0.8888 25 1 6.7345 -4.1570 0.9944 26 1 6.0315 -5.2684 2.1960 27 1 7.5715 -6.5040 0.7327 28 1 5.9030 -7.0409 0.4378 29 1 7.1513 -6.6887 -1.6881 30 1 7.4064 -4.9853 -1.2407 31 1 4.7331 -6.3727 -1.7629 32 1 5.4747 -5.0618 -2.7197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071811694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:25 Heat of formation + Delta-G solvation = -41.996105 kcal Electronic energy + Delta-G solvation = -17480.523640 eV Core-core repulsion = 14634.959678 eV Total energy + Delta-G solvation = -2845.563962 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95336 -38.00449 -37.44166 -35.11569 -33.38364 -32.20962 -31.46240 -28.27206 -25.91647 -24.21865 -22.31164 -22.08767 -20.48840 -19.43584 -17.25136 -16.75286 -16.51818 -15.70762 -15.27214 -14.98578 -14.51223 -14.21267 -14.00642 -13.84314 -13.39053 -13.18855 -12.70562 -12.44350 -11.97671 -11.80650 -11.43552 -11.22898 -11.12276 -10.82669 -10.67034 -10.37728 -10.11693 -9.65418 -9.49901 -8.83137 -8.65249 -8.52911 -6.14443 -4.15794 2.19921 2.63709 3.27417 3.33127 3.34423 3.48616 3.69038 4.34739 4.35616 4.47987 4.63554 4.85321 4.89931 5.06198 5.16266 5.21537 5.43411 5.53802 5.64750 5.67119 5.79702 5.82723 6.06066 6.12688 6.41895 6.61052 6.69030 6.98128 7.43942 7.83331 8.00812 8.34928 8.73202 8.85588 9.42192 10.98561 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039912 B = 0.007447 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.375707 B = 3759.136781 C = 4045.110470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.221 3.779 10 N -0.556 5.556 11 C 0.525 3.475 12 O -0.474 6.474 13 C 0.087 3.913 14 H 0.125 0.875 15 C -0.115 4.115 16 C -0.116 4.116 17 C -0.139 4.139 18 C 0.152 3.848 19 N -0.632 5.632 20 C 0.706 3.294 21 O -0.540 6.540 22 H 0.267 0.733 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.417 -12.789 0.044 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.095 0.905 9 C 0.102 3.898 10 N -0.299 5.299 11 C 0.311 3.689 12 O -0.345 6.345 13 C -0.020 4.020 14 H 0.142 0.858 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.178 4.178 18 C 0.031 3.969 19 N -0.373 5.373 20 C 0.409 3.591 21 O -0.413 6.413 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.072 -12.195 -0.078 18.621 hybrid contribution 0.142 0.876 -0.015 0.887 sum 14.214 -11.319 -0.093 18.171 Atomic orbital electron populations 1.69878 1.06174 1.27260 1.49513 1.24785 0.94836 0.98938 0.94008 0.86851 0.80412 0.83595 0.78951 1.19651 1.20629 1.18835 1.21130 0.88293 0.95345 1.52753 0.90546 1.19912 0.96705 0.74462 0.98722 1.46657 1.59547 1.17155 1.06586 1.20523 0.76166 0.86894 0.85274 1.90736 1.49795 1.75824 1.18133 1.22371 1.00164 0.97551 0.81960 0.85771 1.21768 0.93484 0.99411 1.00701 1.21518 1.01668 0.97476 0.94742 1.22115 0.97142 1.02138 0.96361 1.21440 0.92438 0.90059 0.92974 1.47619 1.64298 1.17977 1.07369 1.15653 0.78095 0.80528 0.84871 1.90928 1.56772 1.73064 1.20570 0.92283 0.93269 0.93681 0.90932 0.89544 0.91069 0.91354 0.90288 0.91292 0.90945 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.96 55.43 0.77 -26.97 16 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.54 -15.97 9.94 -34.44 -0.34 -16.31 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.22 5.65 4.53 -5.20 -0.02 5.63 16 10 N -0.56 -12.49 2.60 -122.30 -0.32 -12.81 16 11 C 0.53 10.36 7.62 -10.63 -0.08 10.28 16 12 O -0.47 -10.47 17.75 5.60 0.10 -10.37 16 13 C 0.09 1.23 3.92 -67.98 -0.27 0.97 16 14 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 15 C -0.12 -1.21 5.50 -26.54 -0.15 -1.36 16 16 C -0.12 -0.90 5.80 -26.53 -0.15 -1.06 16 17 C -0.14 -1.13 6.09 -26.28 -0.16 -1.29 16 18 C 0.15 1.66 7.01 -3.69 -0.03 1.64 16 19 N -0.63 -9.74 3.02 -171.85 -0.52 -10.26 16 20 C 0.71 14.81 8.34 -88.59 -0.74 14.07 16 21 O -0.54 -13.14 17.31 5.33 0.09 -13.05 16 22 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.05 1.25 7.05 -51.93 -0.37 0.88 16 24 H 0.05 1.15 7.34 -51.93 -0.38 0.77 16 25 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.07 8.00 -51.93 -0.42 0.66 16 LS Contribution 270.94 15.07 4.08 4.08 Total: -1.00 -35.20 270.94 -6.63 -41.83 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.13 Total: -4.24 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: -2.04 Total: 14.78 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.06 Total: -50.04 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.19 Total: -23.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.20 -6.63 -41.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071811694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.170 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds