Wall clock time and date at job start Sun Mar 29 2020 21:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48505 * 109.46787 * 269.99831 * 3 2 1 5 5 H 1.48508 * 109.46864 * 29.99358 * 3 2 1 6 6 H 1.48493 * 109.47592 * 149.99669 * 3 2 1 7 7 C 1.37878 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00078 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00278 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.35004 * 124.17248 * 270.00008 * 10 9 7 12 12 O 1.21234 * 127.18601 * 357.41021 * 11 10 9 13 13 C 1.51216 * 105.63187 * 177.40863 * 11 10 9 14 14 H 1.09005 * 112.34341 * 246.60877 * 13 11 10 15 15 C 1.53174 * 110.80349 * 121.19675 * 13 11 10 16 16 C 1.53188 * 108.83351 * 195.09852 * 15 13 11 17 17 C 1.53209 * 110.34994 * 63.27383 * 16 15 13 18 18 C 1.53653 * 109.79018 * 297.80836 * 17 16 15 19 19 N 1.46522 * 107.35751 * 51.05597 * 18 17 16 20 20 C 1.33515 * 129.69809 * 126.58358 * 19 18 17 21 21 O 1.21535 * 124.00574 * 10.73615 * 20 19 18 22 22 H 0.97006 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47393 * 59.99991 * 9 7 2 24 24 H 1.08999 * 109.46966 * 300.00652 * 9 7 2 25 25 H 1.09002 * 109.59852 * 314.94464 * 15 13 11 26 26 H 1.09006 * 109.59949 * 75.25892 * 15 13 11 27 27 H 1.08995 * 109.26897 * 183.71334 * 16 15 13 28 28 H 1.08995 * 109.26868 * 303.18067 * 16 15 13 29 29 H 1.09001 * 109.38360 * 177.70835 * 17 16 15 30 30 H 1.08996 * 109.34485 * 57.88025 * 17 16 15 31 31 H 1.09002 * 109.88163 * 291.59753 * 18 17 16 32 32 H 1.09000 * 109.94081 * 170.55390 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.2522 -3.2905 1.1179 12 8 4.1640 -2.9116 2.2661 13 6 4.6678 -4.6628 0.6377 14 1 3.9455 -5.4330 0.9087 15 6 6.0731 -5.0115 1.1375 16 6 6.5992 -6.2081 0.3388 17 6 6.7381 -5.8406 -1.1421 18 6 5.3604 -5.4823 -1.7206 19 7 4.7565 -4.4894 -0.8282 20 6 4.2519 -3.2856 -1.1089 21 8 4.0461 -2.8808 -2.2362 22 1 -0.4851 0.8401 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8751 -0.6804 -0.8888 25 1 6.7345 -4.1570 0.9944 26 1 6.0315 -5.2684 2.1960 27 1 7.5715 -6.5040 0.7327 28 1 5.9030 -7.0409 0.4378 29 1 7.1513 -6.6887 -1.6881 30 1 7.4064 -4.9853 -1.2407 31 1 4.7331 -6.3727 -1.7629 32 1 5.4747 -5.0618 -2.7197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071811694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:24 Heat of formation + Delta-G solvation = -67.479937 kcal Electronic energy + Delta-G solvation = -17481.628702 eV Core-core repulsion = 14634.959678 eV Total energy + Delta-G solvation = -2846.669024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.44474 -39.62524 -38.64457 -36.82967 -35.20537 -33.76811 -32.60076 -30.16079 -27.10341 -25.71201 -23.84773 -23.46197 -21.70408 -20.70370 -19.37452 -18.28309 -18.11398 -17.24073 -16.84022 -16.29527 -15.99453 -15.67794 -15.29188 -15.01729 -14.72230 -14.62144 -14.23144 -14.01321 -13.72648 -13.35292 -12.70758 -12.62272 -12.34902 -12.14696 -11.93343 -11.84376 -11.73437 -11.48067 -11.05094 -10.91000 -10.61740 -9.89108 -8.44011 -6.53338 0.64379 1.19792 1.31240 1.33562 1.42944 1.99083 2.17228 2.24361 2.88332 3.03178 3.52326 3.84188 4.02618 4.06619 4.13271 4.30697 4.48302 4.52002 4.66360 4.69924 4.78092 4.90036 5.01926 5.06999 5.22039 5.22738 5.25599 5.45443 5.60063 6.01431 6.23905 6.44244 6.45798 7.04944 7.16099 8.72890 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039912 B = 0.007447 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.375707 B = 3759.136781 C = 4045.110470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.245 1.245 7 C -0.553 4.553 8 H 0.028 0.972 9 C 0.230 3.770 10 N -0.576 5.576 11 C 0.514 3.486 12 O -0.505 6.505 13 C 0.098 3.902 14 H 0.155 0.845 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.131 4.131 18 C 0.139 3.861 19 N -0.615 5.615 20 C 0.696 3.304 21 O -0.587 6.587 22 H 0.274 0.726 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.912 -14.249 0.399 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.181 4.181 3 Si 0.771 3.229 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.168 1.168 7 C -0.591 4.591 8 H 0.046 0.954 9 C 0.109 3.891 10 N -0.319 5.319 11 C 0.303 3.697 12 O -0.378 6.378 13 C -0.008 4.008 14 H 0.172 0.828 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.169 4.169 18 C 0.020 3.980 19 N -0.354 5.354 20 C 0.398 3.602 21 O -0.464 6.464 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.609 -13.744 0.291 21.560 hybrid contribution -0.696 1.209 -0.123 1.400 sum 15.913 -12.535 0.169 20.258 Atomic orbital electron populations 1.70020 1.08176 1.28868 1.50419 1.25844 0.95845 1.03432 0.93025 0.85690 0.79639 0.77814 0.79779 1.18535 1.19303 1.16796 1.21304 0.90575 0.93858 1.53397 0.95378 1.19531 0.93924 0.77044 0.98597 1.46732 1.60061 1.16652 1.08437 1.21518 0.75111 0.88794 0.84303 1.90701 1.51087 1.76966 1.19050 1.22613 1.03321 0.94175 0.80720 0.82789 1.21861 0.90304 1.00457 1.02214 1.21549 1.03333 0.96280 0.93564 1.22110 0.94683 1.03014 0.97125 1.21958 0.94589 0.89424 0.92027 1.47866 1.62483 1.16332 1.08711 1.15882 0.78434 0.82051 0.83824 1.90878 1.59055 1.74503 1.21975 0.91712 0.92901 0.93718 0.92142 0.87834 0.88558 0.89441 0.86882 0.92382 0.88210 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.02 1.10 5.47 84.66 0.46 1.56 16 3 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.24 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.55 -34.38 9.94 25.60 0.25 -34.13 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 9 C 0.23 12.09 4.53 85.63 0.39 12.47 16 10 N -0.58 -26.51 2.60 -777.75 -2.02 -28.53 16 11 C 0.51 20.34 7.62 87.79 0.67 21.01 16 12 O -0.51 -22.55 17.75 -2.89 -0.05 -22.61 16 13 C 0.10 2.58 3.92 44.20 0.17 2.75 16 14 H 0.16 3.26 8.14 -2.38 -0.02 3.24 16 15 C -0.11 -1.95 5.50 30.72 0.17 -1.78 16 16 C -0.11 -1.14 5.80 30.73 0.18 -0.96 16 17 C -0.13 -1.58 6.09 30.88 0.19 -1.39 16 18 C 0.14 2.66 7.01 86.59 0.61 3.27 16 19 N -0.61 -18.14 3.02 -816.60 -2.47 -20.61 16 20 C 0.70 29.72 8.34 179.64 1.50 31.22 16 21 O -0.59 -29.54 17.31 -3.83 -0.07 -29.61 16 22 H 0.27 16.16 8.31 -92.70 -0.77 15.38 16 23 H 0.05 2.71 7.05 -2.39 -0.02 2.69 16 24 H 0.04 2.33 7.34 -2.39 -0.02 2.31 16 25 H 0.06 1.24 8.09 -2.39 -0.02 1.22 16 26 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 Total: -1.00 -81.90 270.94 3.22 -78.68 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.06 Total: 1.58 kcal Atomic # 6 Polarization: 29.43 SS G_CDS: 4.59 Total: 34.02 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.19 Total: -109.04 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.12 Total: -52.22 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -81.90 3.22 -78.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071811694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.201 kcal (2) G-P(sol) polarization free energy of solvation -81.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds