Wall clock time and date at job start Sun Mar 29 2020 22:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 C 1.50702 * 109.47079 * 240.00769 * 2 1 3 5 5 C 1.41171 * 126.69769 * 84.70688 * 4 2 1 6 6 C 1.36987 * 103.84099 * 179.89453 * 5 4 2 7 7 C 1.47292 * 126.95880 * 180.08313 * 6 5 4 8 8 O 1.21652 * 120.00323 * 355.41306 * 7 6 5 9 9 N 1.34780 * 120.00290 * 175.41576 * 7 6 5 10 10 C 1.46501 * 120.00054 * 185.44822 * 9 7 6 11 11 C 1.36683 * 119.99729 * 5.44871 * 9 7 6 12 12 H 1.07998 * 119.99880 * 34.92334 * 11 9 7 13 13 C 1.39158 * 120.00389 * 214.91624 * 11 9 7 14 14 N 1.31301 * 119.99754 * 5.21195 * 13 11 9 15 15 Si 1.86794 * 120.00658 * 185.21068 * 13 11 9 16 16 H 1.48507 * 109.47044 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47472 * 119.99711 * 15 13 11 18 18 H 1.48497 * 109.47087 * 240.00522 * 15 13 11 19 19 O 1.34679 * 106.08634 * 0.36390 * 6 5 4 20 20 N 1.20883 * 111.44605 * 359.75430 * 19 6 5 21 21 H 1.09001 * 109.46913 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47752 * 59.99564 * 1 2 3 23 23 H 1.09004 * 109.47045 * 299.99608 * 1 2 3 24 24 H 1.08995 * 109.47670 * 120.00603 * 2 1 3 25 25 H 1.09004 * 109.46838 * 60.00265 * 3 2 1 26 26 H 1.09001 * 109.47276 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47161 * 300.00798 * 3 2 1 28 28 H 1.08001 * 128.07675 * 359.97438 * 5 4 2 29 29 H 1.08994 * 109.46606 * 85.00552 * 10 9 7 30 30 H 1.09001 * 109.46504 * 205.00055 * 10 9 7 31 31 H 1.08996 * 109.46928 * 325.00165 * 10 9 7 32 32 H 0.96993 * 120.00571 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.2150 -0.1491 -2.5130 6 6 2.6844 -1.1941 -3.2641 7 6 3.0470 -1.1662 -4.6915 8 8 2.8619 -0.1579 -5.3465 9 7 3.5837 -2.2578 -5.2719 10 6 4.0544 -2.1938 -6.6578 11 6 3.6890 -3.4244 -4.5675 12 1 2.9267 -3.6934 -3.8514 13 6 4.7783 -4.2656 -4.7733 14 7 5.7555 -3.8922 -5.5667 15 14 4.8504 -5.9260 -3.9206 16 1 3.6354 -6.1071 -3.0861 17 1 4.9162 -7.0037 -4.9402 18 1 6.0569 -5.9871 -3.0571 19 8 2.7412 -2.2538 -2.4349 20 7 2.3769 -1.9624 -1.3197 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3635 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 2.0295 0.8672 -2.8280 29 1 5.0744 -1.8102 -6.6777 30 1 4.0330 -3.1920 -7.0951 31 1 3.4058 -1.5318 -7.2315 32 1 6.5149 -4.4782 -5.7099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072786301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:47 Heat of formation + Delta-G solvation = 20.127966 kcal Electronic energy + Delta-G solvation = -17133.522709 eV Core-core repulsion = 14290.652649 eV Total energy + Delta-G solvation = -2842.870060 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.13023 -38.43174 -36.26036 -34.97915 -31.84784 -31.67888 -30.96907 -27.18783 -26.65282 -25.03015 -23.49694 -22.23864 -20.80269 -19.07937 -18.03716 -16.84838 -16.00253 -15.64299 -14.80600 -14.58014 -14.20989 -13.99993 -13.89620 -13.20515 -13.08999 -12.62655 -12.14016 -11.87927 -11.48213 -11.44339 -11.28780 -11.25244 -11.14518 -10.97339 -10.65801 -10.53696 -10.35899 -9.48905 -9.28075 -8.94302 -8.84878 -7.81796 -6.56947 -4.22240 1.73865 2.69765 3.08446 3.16944 3.23432 3.72624 3.98071 4.12042 4.41477 4.61239 4.93268 4.96691 5.16251 5.34346 5.48873 5.61881 5.77041 5.83266 5.86611 5.97175 6.05253 6.21594 6.25405 6.35752 6.58491 6.66355 6.82219 7.16092 7.30888 7.61098 8.20758 8.77122 8.92371 9.25034 9.63050 10.45659 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028507 B = 0.007935 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.969524 B = 3527.858357 C = 4261.379050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 C -0.143 4.143 4 C 0.007 3.993 5 C -0.202 4.202 6 C -0.016 4.016 7 C 0.516 3.484 8 O -0.592 6.592 9 N -0.409 5.409 10 C 0.117 3.883 11 C -0.339 4.339 12 H 0.107 0.893 13 C 0.049 3.951 14 N -0.856 5.856 15 Si 0.926 3.074 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.277 1.277 19 O 0.134 5.866 20 N -0.379 5.379 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.168 0.832 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 3.862 7.113 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.201 4.201 4 C -0.150 4.150 5 C -0.226 4.226 6 C -0.082 4.082 7 C 0.303 3.697 8 O -0.480 6.480 9 N -0.124 5.124 10 C -0.025 4.025 11 C -0.467 4.467 12 H 0.125 0.875 13 C -0.160 4.160 14 N -0.492 5.492 15 Si 0.751 3.249 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.202 1.202 19 O 0.065 5.935 20 N -0.082 5.082 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.186 0.814 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.112 3.221 7.532 9.656 hybrid contribution 0.234 -0.219 0.006 0.320 sum -4.878 3.002 7.538 9.468 Atomic orbital electron populations 1.21810 0.93862 1.02229 1.02057 1.19415 0.95778 0.95234 0.92766 1.21828 1.01527 0.94595 1.02168 1.23321 1.03711 0.91082 0.96898 1.22464 1.07034 1.01277 0.91806 1.24498 1.01948 0.86994 0.94757 1.16804 0.86158 0.83931 0.82794 1.90692 1.62762 1.32642 1.61860 1.43478 1.49527 1.08343 1.11093 1.21422 0.98446 1.01205 0.81444 1.19944 1.07713 0.96570 1.22517 0.87526 1.25577 0.93886 1.00485 0.96039 1.69899 1.07911 1.37040 1.34306 0.85858 0.79198 0.80591 0.79258 1.18482 1.20285 1.20238 1.85321 1.61155 1.33880 1.13131 1.73658 1.15714 1.16835 1.02022 0.92489 0.92161 0.92025 0.89869 0.92044 0.92282 0.91957 0.81424 0.92312 0.91210 0.94025 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.17 37.16 0.34 -1.31 16 2 C -0.01 -0.17 3.38 -91.77 -0.31 -0.48 16 3 C -0.14 -1.63 8.81 37.16 0.33 -1.30 16 4 C 0.01 0.13 6.20 -82.18 -0.51 -0.38 16 5 C -0.20 -3.95 10.13 -38.92 -0.39 -4.35 16 6 C -0.02 -0.36 6.94 -36.36 -0.25 -0.61 16 7 C 0.52 13.09 7.62 -12.58 -0.10 12.99 16 8 O -0.59 -15.77 16.55 5.23 0.09 -15.69 16 9 N -0.41 -10.52 2.96 -123.49 -0.37 -10.89 16 10 C 0.12 2.79 8.70 59.85 0.52 3.32 16 11 C -0.34 -8.69 8.16 -15.05 -0.12 -8.82 16 12 H 0.11 2.71 5.81 -52.49 -0.31 2.40 16 13 C 0.05 1.21 5.18 -17.44 -0.09 1.12 16 14 N -0.86 -21.95 11.14 55.51 0.62 -21.33 16 15 Si 0.93 19.54 29.56 -169.99 -5.02 14.52 16 16 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 O 0.13 3.07 8.20 15.45 0.13 3.20 16 20 N -0.38 -7.96 12.04 33.53 0.40 -7.56 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.70 7.49 -51.93 -0.39 0.31 16 28 H 0.17 2.95 7.66 -52.49 -0.40 2.54 16 29 H 0.06 1.44 7.73 -51.93 -0.40 1.04 16 30 H 0.07 1.63 7.29 -51.93 -0.38 1.25 16 31 H 0.04 0.93 7.50 -51.93 -0.39 0.54 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -28.63 276.72 -4.51 -33.13 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.94 Total: 0.25 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.59 Total: 0.19 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.66 Total: -39.78 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.21 Total: -12.49 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.63 -4.51 -33.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072786301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.262 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds