Wall clock time and date at job start Sun Mar 29 2020 22:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 C 1.50702 * 109.47079 * 240.00769 * 2 1 3 5 5 C 1.41171 * 126.69769 * 84.70688 * 4 2 1 6 6 C 1.36987 * 103.84099 * 179.89453 * 5 4 2 7 7 C 1.47292 * 126.95880 * 180.08313 * 6 5 4 8 8 O 1.21652 * 120.00323 * 355.41306 * 7 6 5 9 9 N 1.34780 * 120.00290 * 175.41576 * 7 6 5 10 10 C 1.46501 * 120.00054 * 185.44822 * 9 7 6 11 11 C 1.36683 * 119.99729 * 5.44871 * 9 7 6 12 12 H 1.07998 * 119.99880 * 34.92334 * 11 9 7 13 13 C 1.39158 * 120.00389 * 214.91624 * 11 9 7 14 14 N 1.31301 * 119.99754 * 5.21195 * 13 11 9 15 15 Si 1.86794 * 120.00658 * 185.21068 * 13 11 9 16 16 H 1.48507 * 109.47044 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47472 * 119.99711 * 15 13 11 18 18 H 1.48497 * 109.47087 * 240.00522 * 15 13 11 19 19 O 1.34679 * 106.08634 * 0.36390 * 6 5 4 20 20 N 1.20883 * 111.44605 * 359.75430 * 19 6 5 21 21 H 1.09001 * 109.46913 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47752 * 59.99564 * 1 2 3 23 23 H 1.09004 * 109.47045 * 299.99608 * 1 2 3 24 24 H 1.08995 * 109.47670 * 120.00603 * 2 1 3 25 25 H 1.09004 * 109.46838 * 60.00265 * 3 2 1 26 26 H 1.09001 * 109.47276 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47161 * 300.00798 * 3 2 1 28 28 H 1.08001 * 128.07675 * 359.97438 * 5 4 2 29 29 H 1.08994 * 109.46606 * 85.00552 * 10 9 7 30 30 H 1.09001 * 109.46504 * 205.00055 * 10 9 7 31 31 H 1.08996 * 109.46928 * 325.00165 * 10 9 7 32 32 H 0.96993 * 120.00571 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.2150 -0.1491 -2.5130 6 6 2.6844 -1.1941 -3.2641 7 6 3.0470 -1.1662 -4.6915 8 8 2.8619 -0.1579 -5.3465 9 7 3.5837 -2.2578 -5.2719 10 6 4.0544 -2.1938 -6.6578 11 6 3.6890 -3.4244 -4.5675 12 1 2.9267 -3.6934 -3.8514 13 6 4.7783 -4.2656 -4.7733 14 7 5.7555 -3.8922 -5.5667 15 14 4.8504 -5.9260 -3.9206 16 1 3.6354 -6.1071 -3.0861 17 1 4.9162 -7.0037 -4.9402 18 1 6.0569 -5.9871 -3.0571 19 8 2.7412 -2.2538 -2.4349 20 7 2.3769 -1.9624 -1.3197 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3635 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 2.0295 0.8672 -2.8280 29 1 5.0744 -1.8102 -6.6777 30 1 4.0330 -3.1920 -7.0951 31 1 3.4058 -1.5318 -7.2315 32 1 6.5149 -4.4782 -5.7099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072786301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:47 Heat of formation + Delta-G solvation = 3.061285 kcal Electronic energy + Delta-G solvation = -17134.262775 eV Core-core repulsion = 14290.652649 eV Total energy + Delta-G solvation = -2843.610127 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.74558 -40.39635 -37.51257 -36.89764 -33.67658 -33.26253 -32.60825 -28.61455 -28.03271 -26.95866 -24.85464 -23.97765 -22.31857 -20.82755 -19.70019 -18.49915 -17.85460 -17.26177 -16.64251 -16.35281 -15.90554 -15.45371 -15.20962 -14.75126 -14.36357 -14.11343 -13.81375 -13.32618 -13.13488 -13.00709 -12.80056 -12.67272 -12.53362 -12.37568 -12.20507 -12.06511 -11.73215 -11.19553 -10.97362 -10.91116 -10.56895 -9.79046 -8.47672 -6.21174 -0.01986 1.18231 1.41400 1.44162 1.57766 1.98190 2.16329 2.27175 2.82538 3.01101 3.12917 3.65901 4.09405 4.16509 4.20078 4.27417 4.41454 4.57849 4.75772 4.82101 4.87831 4.93569 4.97992 5.04188 5.19320 5.20723 5.34961 5.37139 5.39547 5.67170 6.25764 6.87892 7.12907 7.37063 7.67021 8.56361 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028507 B = 0.007935 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.969524 B = 3527.858357 C = 4261.379050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.016 4.016 3 C -0.141 4.141 4 C 0.026 3.974 5 C -0.183 4.183 6 C -0.048 4.048 7 C 0.509 3.491 8 O -0.613 6.613 9 N -0.423 5.423 10 C 0.127 3.873 11 C -0.358 4.358 12 H 0.105 0.895 13 C 0.012 3.988 14 N -0.882 5.882 15 Si 0.988 3.012 16 H -0.261 1.261 17 H -0.265 1.265 18 H -0.276 1.276 19 O 0.106 5.894 20 N -0.394 5.394 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.189 0.811 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 4.302 8.942 11.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.199 4.199 4 C -0.132 4.132 5 C -0.206 4.206 6 C -0.114 4.114 7 C 0.297 3.703 8 O -0.502 6.502 9 N -0.138 5.138 10 C -0.016 4.016 11 C -0.486 4.486 12 H 0.122 0.878 13 C -0.194 4.194 14 N -0.518 5.518 15 Si 0.811 3.189 16 H -0.185 1.185 17 H -0.190 1.190 18 H -0.201 1.201 19 O 0.042 5.958 20 N -0.101 5.101 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.206 0.794 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.886 3.648 9.322 11.612 hybrid contribution 0.430 -0.245 -0.484 0.692 sum -5.456 3.403 8.838 10.930 Atomic orbital electron populations 1.21810 0.92093 1.02001 1.03698 1.19737 0.97131 0.96088 0.90524 1.21847 1.01011 0.93129 1.03888 1.24110 1.01110 0.90030 0.97978 1.22842 1.04597 1.01356 0.91829 1.24308 1.04432 0.88420 0.94228 1.17118 0.85758 0.83583 0.83821 1.90649 1.63592 1.33190 1.62819 1.43695 1.49712 1.08681 1.11692 1.21318 0.97838 1.01210 0.81225 1.20103 1.08405 0.96956 1.23160 0.87802 1.26356 0.93220 1.03417 0.96361 1.69970 1.08399 1.38318 1.35090 0.84934 0.78891 0.76738 0.78369 1.18498 1.18977 1.20147 1.85289 1.62524 1.34294 1.13723 1.73657 1.16731 1.18418 1.01309 0.93676 0.92222 0.88747 0.89103 0.88900 0.93151 0.91766 0.79362 0.93535 0.91290 0.93122 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.17 71.98 0.66 -2.09 16 2 C -0.02 -0.37 3.38 -11.54 -0.04 -0.41 16 3 C -0.14 -2.69 8.81 71.98 0.63 -2.06 16 4 C 0.03 0.90 6.20 43.52 0.27 1.17 16 5 C -0.18 -6.95 10.13 22.70 0.23 -6.72 16 6 C -0.05 -2.22 6.94 24.36 0.17 -2.05 16 7 C 0.51 26.31 7.62 86.62 0.66 26.97 16 8 O -0.61 -33.07 16.55 -4.20 -0.07 -33.14 16 9 N -0.42 -22.24 2.96 -662.85 -1.96 -24.20 16 10 C 0.13 6.16 8.70 127.77 1.11 7.28 16 11 C -0.36 -18.70 8.16 84.16 0.69 -18.01 16 12 H 0.10 5.40 5.81 -2.91 -0.02 5.38 16 13 C 0.01 0.62 5.18 84.99 0.44 1.06 16 14 N -0.88 -45.56 11.14 21.70 0.24 -45.32 16 15 Si 0.99 39.93 29.56 68.60 2.03 41.95 16 16 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 19 O 0.11 4.92 8.20 65.45 0.54 5.46 16 20 N -0.39 -16.31 12.04 -48.76 -0.59 -16.90 16 21 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.21 7.49 -2.38 -0.02 1.19 16 28 H 0.19 6.24 7.66 -2.91 -0.02 6.22 16 29 H 0.05 2.34 7.73 -2.39 -0.02 2.32 16 30 H 0.07 3.30 7.29 -2.39 -0.02 3.28 16 31 H 0.05 2.31 7.50 -2.39 -0.02 2.30 16 32 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -61.56 276.72 6.13 -55.43 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.12 Total: 11.59 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.82 Total: 5.13 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.31 Total: -86.42 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: 0.47 Total: -27.68 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -61.56 6.13 -55.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072786301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.487 kcal (2) G-P(sol) polarization free energy of solvation -61.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds