Wall clock time and date at job start Sun Mar 29 2020 22:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21493 * 120.00387 * 0.02562 * 14 13 3 16 16 C 1.48331 * 120.00085 * 180.02562 * 14 13 3 17 17 C 1.42274 * 126.94016 * 180.02562 * 16 14 13 18 18 C 1.35324 * 103.91877 * 179.97438 * 17 16 14 19 19 C 1.50705 * 126.65919 * 180.02562 * 18 17 16 20 20 O 1.34009 * 106.67020 * 359.97438 * 18 17 16 21 21 N 1.20903 * 111.84926 * 359.71241 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.07997 * 128.03843 * 0.02562 * 17 16 14 30 30 H 1.08997 * 109.47038 * 90.00240 * 19 18 17 31 31 H 1.09001 * 109.46664 * 210.00132 * 19 18 17 32 32 H 1.09002 * 109.47068 * 329.99940 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3406 2.6326 -0.4324 16 6 0.0426 3.3272 -2.6345 17 6 -1.1957 3.9686 -2.9161 18 6 -1.0542 4.4049 -4.1892 19 6 -2.0753 5.1604 -5.0002 20 8 0.1707 4.0356 -4.5882 21 7 0.7686 3.4462 -3.7183 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0605 2.9503 28 1 2.2720 2.1232 -1.9977 29 1 -2.0498 4.0818 -2.2648 30 1 -1.9395 6.2312 -4.8488 31 1 -1.9476 4.9238 -6.0565 32 1 -3.0773 4.8726 -4.6819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090253637.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:03 Heat of formation + Delta-G solvation = 14.060759 kcal Electronic energy + Delta-G solvation = -16810.718159 eV Core-core repulsion = 13967.585005 eV Total energy + Delta-G solvation = -2843.133154 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.92820 -38.97903 -35.18925 -33.97527 -33.36684 -32.27783 -30.84064 -27.88538 -27.15860 -24.48942 -22.90702 -22.37807 -20.05010 -19.28629 -17.71189 -17.57219 -16.82589 -15.74449 -15.32236 -14.52741 -14.40138 -13.95400 -13.74273 -13.45801 -13.19631 -12.70540 -12.55137 -12.14860 -11.57121 -11.36064 -11.25180 -11.00615 -10.83847 -10.36266 -10.26533 -10.15631 -9.67451 -9.38904 -9.37667 -9.08681 -8.51940 -7.91881 -6.13521 -4.23051 1.33545 1.85918 3.02142 3.26629 3.31326 3.33085 3.73049 3.78664 4.27464 4.35874 4.74545 5.01025 5.16860 5.17952 5.19858 5.41450 5.59501 5.73901 6.00551 6.36703 6.43009 6.62241 7.01606 7.14648 7.29027 7.35821 7.58269 7.69049 7.85353 8.13834 8.15963 8.58578 8.72120 8.98556 9.43640 10.91939 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.005881 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.675613 B = 4760.060775 C = 5249.000985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.580 3.420 15 O -0.532 6.532 16 C -0.014 4.014 17 C -0.186 4.186 18 C -0.047 4.047 19 C -0.070 4.070 20 O 0.113 5.887 21 N -0.336 5.336 22 H 0.036 0.964 23 H 0.051 0.949 24 H 0.025 0.975 25 H 0.102 0.898 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.395 0.605 29 H 0.178 0.822 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 6.694 -12.100 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.335 5.335 14 C 0.361 3.639 15 O -0.409 6.409 16 C -0.174 4.174 17 C -0.208 4.208 18 C -0.110 4.110 19 C -0.127 4.127 20 O 0.040 5.960 21 N -0.038 5.038 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.120 0.880 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.228 0.772 29 H 0.195 0.805 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.894 6.123 -11.472 15.212 hybrid contribution 0.580 0.102 0.155 0.609 sum -7.314 6.225 -11.316 14.843 Atomic orbital electron populations 1.21854 0.98333 0.98258 1.01159 1.21950 0.92643 0.99566 1.02547 1.18916 0.94562 0.89316 0.80416 0.92952 1.21178 0.90469 1.39319 1.06471 0.92023 1.24873 0.98748 0.94662 0.95262 1.69880 1.35295 1.37478 1.09309 0.86477 0.84649 0.78364 0.77461 1.20146 1.21074 1.20103 1.46473 1.13786 1.54237 1.19004 1.16920 0.83469 0.79295 0.84173 1.90762 1.51723 1.60130 1.38249 1.24030 0.93444 1.03799 0.96092 1.22457 0.99812 1.02534 0.96011 1.24448 0.88493 1.02414 0.95642 1.20309 0.94242 0.99002 0.99175 1.84760 1.23081 1.53024 1.35168 1.74182 1.19417 1.11469 0.98731 0.94497 0.92993 0.95598 0.87973 0.94861 0.92438 0.77190 0.80471 0.89451 0.89849 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.18 5.45 -26.74 -0.15 -3.33 16 3 C 0.27 6.96 2.24 -69.09 -0.15 6.80 16 4 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.49 8.73 -34.44 -0.30 -14.79 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 N -0.69 -15.49 5.02 -55.73 -0.28 -15.77 16 14 C 0.58 12.52 6.41 -12.11 -0.08 12.44 16 15 O -0.53 -12.70 14.09 5.37 0.08 -12.62 16 16 C -0.01 -0.25 7.19 -82.52 -0.59 -0.84 16 17 C -0.19 -2.62 10.92 -39.07 -0.43 -3.05 16 18 C -0.05 -0.53 7.47 -35.34 -0.26 -0.80 16 19 C -0.07 -0.42 10.45 36.01 0.38 -0.04 16 20 O 0.11 1.58 11.18 17.26 0.19 1.77 16 21 N -0.34 -5.67 11.84 33.30 0.39 -5.28 16 22 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 23 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 8.30 8.30 -40.82 -0.34 7.96 16 29 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 277.08 15.07 4.18 4.18 Total: -1.00 -30.59 277.08 -5.02 -35.61 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.82 Total: 5.12 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.37 Total: -4.70 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.74 Total: -45.20 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.27 Total: -10.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.59 -5.02 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090253637.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.671 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds