Wall clock time and date at job start Sun Mar 29 2020 22:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21493 * 120.00387 * 0.02562 * 14 13 3 16 16 C 1.48331 * 120.00085 * 180.02562 * 14 13 3 17 17 C 1.42274 * 126.94016 * 180.02562 * 16 14 13 18 18 C 1.35324 * 103.91877 * 179.97438 * 17 16 14 19 19 C 1.50705 * 126.65919 * 180.02562 * 18 17 16 20 20 O 1.34009 * 106.67020 * 359.97438 * 18 17 16 21 21 N 1.20903 * 111.84926 * 359.71241 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.07997 * 128.03843 * 0.02562 * 17 16 14 30 30 H 1.08997 * 109.47038 * 90.00240 * 19 18 17 31 31 H 1.09001 * 109.46664 * 210.00132 * 19 18 17 32 32 H 1.09002 * 109.47068 * 329.99940 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3406 2.6326 -0.4324 16 6 0.0426 3.3272 -2.6345 17 6 -1.1957 3.9686 -2.9161 18 6 -1.0542 4.4049 -4.1892 19 6 -2.0753 5.1604 -5.0002 20 8 0.1707 4.0356 -4.5882 21 7 0.7686 3.4462 -3.7183 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0605 2.9503 28 1 2.2720 2.1232 -1.9977 29 1 -2.0498 4.0818 -2.2648 30 1 -1.9395 6.2312 -4.8488 31 1 -1.9476 4.9238 -6.0565 32 1 -3.0773 4.8726 -4.6819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090253637.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:02 Heat of formation + Delta-G solvation = -6.916522 kcal Electronic energy + Delta-G solvation = -16811.627802 eV Core-core repulsion = 13967.585005 eV Total energy + Delta-G solvation = -2844.042797 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.13622 -40.75820 -37.11044 -35.16174 -34.63799 -34.07835 -32.71443 -29.16500 -28.66001 -26.10212 -24.71504 -23.68583 -21.84700 -21.06345 -19.02981 -18.90953 -18.28976 -17.48629 -17.24025 -16.34185 -16.21547 -15.27625 -14.82215 -14.68567 -14.44516 -14.03329 -13.89841 -13.58455 -13.29829 -13.22048 -12.99077 -12.70031 -12.39760 -12.24725 -12.12996 -11.69688 -11.46240 -11.20049 -11.13785 -10.58778 -10.37341 -9.82714 -8.21045 -6.39108 0.11098 0.71727 1.42568 1.44559 1.52594 1.99954 2.16183 2.22217 2.42790 3.00569 3.08181 3.64919 3.96377 4.18999 4.39254 4.42897 4.50034 4.67904 4.81035 4.85351 4.90075 4.98542 5.18047 5.27983 5.35002 5.40069 5.52150 5.69543 5.79667 6.07847 6.63705 6.69485 7.07023 7.17813 7.35044 8.84388 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038629 B = 0.005881 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.675613 B = 4760.060775 C = 5249.000985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.276 3.724 4 H 0.008 0.992 5 C -0.556 4.556 6 H 0.066 0.934 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.972 3.028 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.266 1.266 13 N -0.690 5.690 14 C 0.579 3.421 15 O -0.562 6.562 16 C -0.047 4.047 17 C -0.202 4.202 18 C -0.015 4.015 19 C -0.070 4.070 20 O 0.128 5.872 21 N -0.353 5.353 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.038 0.962 27 H 0.268 0.732 28 H 0.402 0.598 29 H 0.191 0.809 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 7.557 -14.222 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.594 4.594 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.797 3.203 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.191 1.191 13 N -0.338 5.338 14 C 0.364 3.636 15 O -0.441 6.441 16 C -0.205 4.205 17 C -0.225 4.225 18 C -0.079 4.079 19 C -0.126 4.126 20 O 0.050 5.950 21 N -0.053 5.053 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.236 0.764 29 H 0.208 0.792 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.238 6.983 -13.604 17.369 hybrid contribution 0.593 -0.078 0.721 0.937 sum -7.645 6.905 -12.883 16.495 Atomic orbital electron populations 1.21693 0.96752 0.99572 1.00221 1.21802 0.93990 0.98698 1.01555 1.18556 0.94095 0.89475 0.80484 0.97454 1.21477 0.91146 1.39759 1.07024 0.91616 1.25737 1.03507 0.94030 0.94739 1.70016 1.37227 1.37873 1.09735 0.85398 0.78773 0.78465 0.77714 1.19758 1.20604 1.19097 1.46278 1.14665 1.54736 1.18139 1.17320 0.82528 0.78511 0.85266 1.90729 1.52357 1.61125 1.39843 1.23631 0.95670 1.06036 0.95137 1.22680 0.99033 1.03189 0.97590 1.25327 0.87593 1.00036 0.94897 1.20674 0.93169 0.99319 0.99473 1.84728 1.24144 1.51934 1.34157 1.74176 1.20174 1.12214 0.98777 0.94431 0.94854 0.93028 0.90232 0.94313 0.92296 0.76374 0.79198 0.87301 0.87743 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.51 71.98 0.61 -5.17 16 2 C -0.12 -6.20 5.45 30.59 0.17 -6.03 16 3 C 0.28 14.86 2.24 44.24 0.10 14.95 16 4 H 0.01 0.47 7.58 -2.39 -0.02 0.45 16 5 C -0.56 -30.69 8.73 25.60 0.22 -30.46 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -52.33 11.29 21.45 0.24 -52.09 16 9 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 N -0.69 -32.07 5.02 -448.53 -2.25 -34.32 16 14 C 0.58 25.75 6.41 86.93 0.56 26.30 16 15 O -0.56 -27.83 14.09 -3.69 -0.05 -27.88 16 16 C -0.05 -1.69 7.19 42.96 0.31 -1.38 16 17 C -0.20 -5.40 10.92 22.60 0.25 -5.16 16 18 C -0.02 -0.30 7.47 25.01 0.19 -0.11 16 19 C -0.07 -0.51 10.45 71.24 0.74 0.24 16 20 O 0.13 3.26 11.18 71.95 0.80 4.07 16 21 N -0.35 -11.67 11.84 -49.50 -0.59 -12.25 16 22 H 0.04 1.70 5.65 -2.39 -0.01 1.69 16 23 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 24 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.08 4.44 5.95 -2.39 -0.01 4.43 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.40 17.31 8.30 -92.71 -0.77 16.54 16 29 H 0.19 4.44 8.06 -2.91 -0.02 4.41 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -68.42 277.08 4.15 -64.26 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.37 Total: 18.53 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 3.59 Total: -5.24 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -2.59 Total: -98.66 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.75 Total: -23.81 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -68.42 4.15 -64.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090253637.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.348 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds