Wall clock time and date at job start Sun Mar 29 2020 22:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21498 * 119.99892 * 0.02562 * 14 13 3 16 16 C 1.48330 * 119.99915 * 180.02562 * 14 13 3 17 17 C 1.42280 * 126.93747 * 179.71401 * 16 14 13 18 18 C 1.35310 * 103.92176 * 179.90987 * 17 16 14 19 19 C 1.50700 * 126.66534 * 180.13006 * 18 17 16 20 20 O 1.34018 * 106.66968 * 0.34596 * 18 17 16 21 21 N 1.20910 * 111.84500 * 359.75854 * 20 18 17 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 28 28 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 29 29 H 1.07997 * 128.03329 * 0.02860 * 17 16 14 30 30 H 1.08998 * 109.47069 * 180.28480 * 19 18 17 31 31 H 1.08995 * 109.46976 * 300.28339 * 19 18 17 32 32 H 1.09004 * 109.47011 * 60.28374 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3410 2.6318 0.4328 16 6 0.0430 3.3279 2.6343 17 6 -1.1934 3.9740 2.9142 18 6 -1.0534 4.4068 4.1886 19 6 -2.0746 5.1619 4.9998 20 8 0.1716 4.0376 4.5876 21 7 0.7670 3.4423 3.7198 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8292 -0.0609 -2.9500 28 1 2.2719 2.1231 1.9979 29 1 -2.0462 4.0900 2.2618 30 1 -1.6679 5.3748 5.9884 31 1 -2.3174 6.0982 4.4975 32 1 -2.9770 4.5587 5.1002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090253638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:06 Heat of formation + Delta-G solvation = 14.058813 kcal Electronic energy + Delta-G solvation = -16810.674856 eV Core-core repulsion = 13967.541618 eV Total energy + Delta-G solvation = -2843.133238 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.92625 -38.97784 -35.18813 -33.97210 -33.36806 -32.27856 -30.84066 -27.88614 -27.15856 -24.48964 -22.90509 -22.37529 -20.05065 -19.28607 -17.70845 -17.57087 -16.82539 -15.74271 -15.32334 -14.52695 -14.40280 -13.95182 -13.73801 -13.46648 -13.19565 -12.70438 -12.54761 -12.14935 -11.57059 -11.36592 -11.25252 -11.00622 -10.83823 -10.36244 -10.26315 -10.15687 -9.67406 -9.38835 -9.37314 -9.08690 -8.51961 -7.91862 -6.13521 -4.23048 1.33653 1.85802 3.02575 3.26621 3.31326 3.33080 3.73113 3.78710 4.27297 4.35804 4.75578 5.01247 5.17774 5.17929 5.18520 5.41171 5.59554 5.74124 6.00797 6.36714 6.43083 6.62279 7.01619 7.14686 7.29036 7.35844 7.58288 7.69055 7.85382 8.13824 8.16040 8.58605 8.72123 8.98572 9.43641 10.91946 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.005881 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.845198 B = 4759.994541 C = 5248.761451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.579 3.421 15 O -0.532 6.532 16 C -0.013 4.013 17 C -0.186 4.186 18 C -0.047 4.047 19 C -0.070 4.070 20 O 0.113 5.887 21 N -0.336 5.336 22 H 0.036 0.964 23 H 0.025 0.975 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.102 0.898 27 H 0.266 0.734 28 H 0.395 0.605 29 H 0.178 0.822 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 6.707 12.099 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.335 5.335 14 C 0.361 3.639 15 O -0.409 6.409 16 C -0.173 4.173 17 C -0.209 4.209 18 C -0.110 4.110 19 C -0.128 4.128 20 O 0.040 5.960 21 N -0.038 5.038 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.228 0.772 29 H 0.195 0.805 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.892 6.130 11.473 15.215 hybrid contribution 0.579 0.101 -0.156 0.608 sum -7.313 6.232 11.317 14.845 Atomic orbital electron populations 1.21854 0.98332 0.98256 1.01160 1.21951 0.92644 0.99567 1.02546 1.18917 0.94561 0.89316 0.80410 0.92954 1.21178 0.90471 1.39334 1.06462 0.92022 1.24871 0.98746 0.94665 0.95257 1.69876 1.35299 1.37456 1.09327 0.86480 0.84652 0.78367 0.77460 1.20098 1.21074 1.20150 1.46475 1.13790 1.54236 1.19000 1.16921 0.83470 0.79296 0.84175 1.90763 1.51708 1.60133 1.38262 1.24028 0.93540 1.03760 0.96006 1.22441 0.99780 1.02611 0.96028 1.24442 0.88429 1.02484 0.95618 1.20311 0.94234 0.99037 0.99177 1.84772 1.23098 1.52783 1.35379 1.74175 1.19505 1.11367 0.98776 0.94489 0.95600 0.92998 0.94860 0.87975 0.92436 0.77191 0.80468 0.89897 0.89176 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 6.96 2.24 -69.08 -0.15 6.81 16 4 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.49 8.73 -34.44 -0.30 -14.79 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.15 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.69 -15.49 5.02 -55.73 -0.28 -15.77 16 14 C 0.58 12.52 6.42 -12.11 -0.08 12.44 16 15 O -0.53 -12.70 14.09 5.37 0.08 -12.63 16 16 C -0.01 -0.24 7.19 -82.52 -0.59 -0.83 16 17 C -0.19 -2.63 10.92 -39.07 -0.43 -3.06 16 18 C -0.05 -0.53 7.47 -35.35 -0.26 -0.79 16 19 C -0.07 -0.42 10.45 36.01 0.38 -0.05 16 20 O 0.11 1.58 11.18 17.24 0.19 1.77 16 21 N -0.34 -5.68 11.84 33.30 0.39 -5.28 16 22 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 8.30 8.30 -40.82 -0.34 7.96 16 29 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 277.08 15.07 4.18 4.18 Total: -1.00 -30.59 277.08 -5.02 -35.61 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.82 Total: 5.13 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.37 Total: -4.70 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.74 Total: -45.20 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.27 Total: -10.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.59 -5.02 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090253638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.669 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds