Wall clock time and date at job start Sun Mar 29 2020 22:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21498 * 119.99892 * 0.02562 * 14 13 3 16 16 C 1.48330 * 119.99915 * 180.02562 * 14 13 3 17 17 C 1.42280 * 126.93747 * 179.71401 * 16 14 13 18 18 C 1.35310 * 103.92176 * 179.90987 * 17 16 14 19 19 C 1.50700 * 126.66534 * 180.13006 * 18 17 16 20 20 O 1.34018 * 106.66968 * 0.34596 * 18 17 16 21 21 N 1.20910 * 111.84500 * 359.75854 * 20 18 17 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 28 28 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 29 29 H 1.07997 * 128.03329 * 0.02860 * 17 16 14 30 30 H 1.08998 * 109.47069 * 180.28480 * 19 18 17 31 31 H 1.08995 * 109.46976 * 300.28339 * 19 18 17 32 32 H 1.09004 * 109.47011 * 60.28374 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3410 2.6318 0.4328 16 6 0.0430 3.3279 2.6343 17 6 -1.1934 3.9740 2.9142 18 6 -1.0534 4.4068 4.1886 19 6 -2.0746 5.1619 4.9998 20 8 0.1716 4.0376 4.5876 21 7 0.7670 3.4423 3.7198 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8292 -0.0609 -2.9500 28 1 2.2719 2.1231 1.9979 29 1 -2.0462 4.0900 2.2618 30 1 -1.6679 5.3748 5.9884 31 1 -2.3174 6.0982 4.4975 32 1 -2.9770 4.5587 5.1002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090253638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:05 Heat of formation + Delta-G solvation = -6.918411 kcal Electronic energy + Delta-G solvation = -16811.584497 eV Core-core repulsion = 13967.541618 eV Total energy + Delta-G solvation = -2844.042879 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.13437 -40.75720 -37.10958 -35.16019 -34.63769 -34.07929 -32.71474 -29.16557 -28.66016 -26.10267 -24.71471 -23.68213 -21.84752 -21.06346 -19.02860 -18.90829 -18.28798 -17.48509 -17.24099 -16.34238 -16.21470 -15.27617 -14.82023 -14.68664 -14.43961 -14.03543 -13.90407 -13.58475 -13.29361 -13.22050 -12.99096 -12.70027 -12.40566 -12.24737 -12.12973 -11.69627 -11.46264 -11.20025 -11.13791 -10.58807 -10.36891 -9.82707 -8.21042 -6.39103 0.11224 0.71570 1.42577 1.44552 1.52578 2.00217 2.16119 2.22434 2.42786 3.00521 3.08195 3.64892 3.96974 4.19334 4.39173 4.42850 4.50085 4.67897 4.81508 4.85497 4.88991 4.98518 5.18046 5.28306 5.34984 5.40080 5.52142 5.69549 5.79688 6.07824 6.63707 6.69506 7.07116 7.17833 7.35048 8.84398 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.005881 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.845198 B = 4759.994541 C = 5248.761451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.276 3.724 4 H 0.008 0.992 5 C -0.556 4.556 6 H 0.066 0.934 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.272 1.272 13 N -0.690 5.690 14 C 0.579 3.421 15 O -0.562 6.562 16 C -0.047 4.047 17 C -0.203 4.203 18 C -0.015 4.015 19 C -0.070 4.070 20 O 0.128 5.872 21 N -0.354 5.354 22 H 0.037 0.963 23 H 0.051 0.949 24 H 0.032 0.968 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.268 0.732 28 H 0.402 0.598 29 H 0.191 0.809 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 7.565 14.218 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.594 4.594 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.796 3.204 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.338 5.338 14 C 0.364 3.636 15 O -0.441 6.441 16 C -0.204 4.204 17 C -0.225 4.225 18 C -0.078 4.078 19 C -0.126 4.126 20 O 0.050 5.950 21 N -0.054 5.054 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.236 0.764 29 H 0.208 0.792 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.241 6.986 13.603 17.371 hybrid contribution 0.592 -0.079 -0.722 0.937 sum -7.649 6.907 12.881 16.497 Atomic orbital electron populations 1.21693 0.96753 0.99568 1.00221 1.21803 0.93988 0.98700 1.01554 1.18557 0.94095 0.89475 0.80479 0.97454 1.21477 0.91146 1.39774 1.07014 0.91615 1.25735 1.03504 0.94034 0.94734 1.70012 1.37230 1.37851 1.09753 0.85400 0.78777 0.78465 0.77715 1.19086 1.20605 1.19768 1.46280 1.14667 1.54735 1.18135 1.17322 0.82529 0.78512 0.85268 1.90731 1.52342 1.61128 1.39856 1.23629 0.95770 1.05992 0.95051 1.22660 0.99002 1.03261 0.97612 1.25322 0.87533 1.00096 0.94870 1.20674 0.93147 0.99380 0.99448 1.84740 1.24164 1.51691 1.34368 1.74170 1.20262 1.12118 0.98819 0.94426 0.93032 0.94861 0.94312 0.90233 0.92292 0.76375 0.79210 0.87858 0.87072 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.51 71.98 0.61 -5.17 16 2 C -0.12 -6.20 5.45 30.59 0.17 -6.03 16 3 C 0.28 14.86 2.24 44.24 0.10 14.96 16 4 H 0.01 0.47 7.58 -2.39 -0.02 0.45 16 5 C -0.56 -30.69 8.73 25.60 0.22 -30.46 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -52.33 11.29 21.45 0.24 -52.08 16 9 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.69 -32.07 5.02 -448.52 -2.25 -34.32 16 14 C 0.58 25.75 6.42 86.93 0.56 26.30 16 15 O -0.56 -27.83 14.09 -3.71 -0.05 -27.88 16 16 C -0.05 -1.68 7.19 42.96 0.31 -1.37 16 17 C -0.20 -5.41 10.92 22.60 0.25 -5.17 16 18 C -0.01 -0.29 7.47 25.01 0.19 -0.11 16 19 C -0.07 -0.51 10.45 71.24 0.74 0.24 16 20 O 0.13 3.26 11.18 71.85 0.80 4.06 16 21 N -0.35 -11.68 11.84 -49.51 -0.59 -12.26 16 22 H 0.04 1.70 5.64 -2.39 -0.01 1.69 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.03 1.62 7.84 -2.38 -0.02 1.60 16 25 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 4.44 5.95 -2.39 -0.01 4.43 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.75 16 28 H 0.40 17.31 8.30 -92.71 -0.77 16.54 16 29 H 0.19 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -68.41 277.08 4.15 -64.26 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.37 Total: 18.54 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 3.59 Total: -5.23 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -2.59 Total: -98.67 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.75 Total: -23.82 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -68.41 4.15 -64.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090253638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.345 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds