Wall clock time and date at job start Sun Mar 29 2020 22:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33698 * 126.27368 * 2 1 4 4 C 1.30616 * 108.98986 * 180.31056 * 3 2 1 5 5 O 1.33663 * 109.16112 * 359.72687 * 4 3 2 6 6 C 1.35347 * 107.67993 * 0.02562 * 5 4 3 7 7 C 1.46724 * 126.64419 * 180.02562 * 6 5 4 8 8 O 1.21680 * 120.00214 * 173.14598 * 7 6 5 9 9 N 1.34781 * 119.99745 * 353.14610 * 7 6 5 10 10 C 1.46499 * 120.00282 * 3.54353 * 9 7 6 11 11 C 1.46502 * 119.99781 * 183.54399 * 9 7 6 12 12 H 1.08998 * 109.47158 * 0.02562 * 11 9 7 13 13 C 1.53002 * 109.46834 * 119.99721 * 11 9 7 14 14 C 1.50699 * 109.47171 * 239.99615 * 11 9 7 15 15 H 1.07998 * 119.99656 * 0.02562 * 14 11 9 16 16 C 1.37876 * 120.00246 * 179.97438 * 14 11 9 17 17 N 1.31508 * 120.00185 * 180.02562 * 16 14 11 18 18 Si 1.86806 * 119.99731 * 0.02562 * 16 14 11 19 19 H 1.48496 * 109.47293 * 89.99683 * 18 16 14 20 20 H 1.48502 * 109.46863 * 210.00042 * 18 16 14 21 21 H 1.48498 * 109.46788 * 329.99716 * 18 16 14 22 22 H 1.09000 * 109.46948 * 270.15107 * 1 2 3 23 23 H 1.09003 * 109.46877 * 30.14013 * 1 2 3 24 24 H 1.08994 * 109.47383 * 150.14577 * 1 2 3 25 25 H 1.08005 * 125.42123 * 179.72839 * 4 3 2 26 26 H 1.08993 * 109.46944 * 84.00023 * 10 9 7 27 27 H 1.08997 * 109.46990 * 204.00561 * 10 9 7 28 28 H 1.09000 * 109.46737 * 324.00324 * 10 9 7 29 29 H 1.09000 * 109.46807 * 179.97438 * 13 11 9 30 30 H 1.08995 * 109.47867 * 299.99973 * 13 11 9 31 31 H 1.08998 * 109.47216 * 60.00253 * 13 11 9 32 32 H 0.97000 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6898 -0.0067 5 8 3.5890 -0.6461 -0.0052 6 6 2.3136 -1.0992 0.0023 7 6 1.8826 -2.5016 0.0070 8 8 0.7044 -2.7756 0.1393 9 7 2.7916 -3.4865 -0.1353 10 6 4.2177 -3.1610 -0.2167 11 6 2.3536 -4.8826 -0.2086 12 1 1.2673 -4.9271 -0.1317 13 6 2.7949 -5.4861 -1.5436 14 6 2.9704 -5.6627 0.9237 15 1 3.6230 -5.1679 1.6277 16 6 2.7007 -7.0078 1.0614 17 7 3.2385 -7.6884 2.0498 18 14 1.5713 -7.8634 -0.1560 19 1 2.3738 -8.3938 -1.2873 20 1 0.8705 -8.9835 0.5219 21 1 0.5718 -6.8929 -0.6702 22 1 -0.3633 0.0027 1.0277 23 1 -0.3633 0.8888 -0.5160 24 1 -0.3634 -0.8912 -0.5115 25 1 4.4044 1.3442 -0.0125 26 1 4.6236 -3.0529 0.7890 27 1 4.7439 -3.9613 -0.7370 28 1 4.3464 -2.2265 -0.7628 29 1 2.4694 -6.5249 -1.5979 30 1 2.3489 -4.9219 -2.3626 31 1 3.8813 -5.4416 -1.6210 32 1 3.0491 -8.6348 2.1465 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093232576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:01 Heat of formation + Delta-G solvation = -24.177641 kcal Electronic energy + Delta-G solvation = -17287.835704 eV Core-core repulsion = 14443.044408 eV Total energy + Delta-G solvation = -2844.791295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.46469 -40.74170 -37.59056 -36.26849 -34.79404 -32.96566 -32.00590 -28.91506 -27.81816 -27.17651 -25.09294 -23.44773 -22.16359 -20.71702 -19.01575 -18.35801 -17.97590 -17.76192 -17.33416 -16.48541 -15.82401 -15.60169 -15.07483 -14.80282 -14.37177 -14.16413 -14.11720 -13.94812 -13.64052 -13.18656 -13.13475 -13.01823 -12.59483 -12.11162 -12.08632 -11.81062 -11.60674 -11.40497 -11.09229 -10.81952 -10.09298 -9.49862 -8.36995 -6.43240 -0.18476 1.26841 1.36470 1.41870 1.45002 1.46733 2.01741 2.20672 2.26754 2.97930 3.16652 3.57977 3.69794 4.25910 4.39014 4.39857 4.44948 4.54885 4.58493 4.67076 4.68482 4.82762 4.87916 4.98155 5.11311 5.26069 5.33896 5.41709 5.59421 6.12049 6.42149 6.56042 6.61042 6.98717 7.23708 8.79154 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039840 B = 0.007074 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.637239 B = 3957.284629 C = 4241.808808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.071 3.929 3 N -0.520 5.520 4 C 0.220 3.780 5 O -0.186 6.186 6 C -0.128 4.128 7 C 0.587 3.413 8 O -0.561 6.561 9 N -0.584 5.584 10 C 0.086 3.914 11 C 0.232 3.768 12 H 0.040 0.960 13 C -0.156 4.156 14 C -0.532 4.532 15 H 0.042 0.958 16 C 0.024 3.976 17 N -0.939 5.939 18 Si 0.942 3.058 19 H -0.251 1.251 20 H -0.295 1.295 21 H -0.257 1.257 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.312 0.688 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 14.977 -8.285 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 N -0.249 5.249 4 C -0.004 4.004 5 O -0.073 6.073 6 C -0.183 4.183 7 C 0.375 3.625 8 O -0.443 6.443 9 N -0.313 5.313 10 C -0.056 4.056 11 C 0.130 3.870 12 H 0.058 0.942 13 C -0.213 4.213 14 C -0.570 4.570 15 H 0.060 0.940 16 C -0.175 4.175 17 N -0.578 5.578 18 Si 0.769 3.231 19 H -0.177 1.177 20 H -0.222 1.222 21 H -0.182 1.182 22 H 0.102 0.898 23 H 0.114 0.886 24 H 0.095 0.905 25 H 0.326 0.674 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.312 15.213 -8.136 17.302 hybrid contribution 0.039 -1.443 0.171 1.454 sum 1.351 13.770 -7.965 15.965 Atomic orbital electron populations 1.20344 0.84933 1.04164 1.03925 1.22278 0.99057 0.86585 0.97339 1.70375 1.02460 1.30975 1.21130 1.29691 0.98284 0.79509 0.92915 1.84717 1.28286 1.25064 1.69256 1.22592 0.82468 0.95249 1.17972 1.16845 0.85467 0.82528 0.77611 1.90771 1.17698 1.82519 1.53294 1.47878 1.07974 1.06681 1.68724 1.21933 0.79461 1.02229 1.02002 1.19110 0.96120 0.77625 0.94162 0.94175 1.22342 1.02676 0.99568 0.96736 1.21313 1.29719 0.94330 1.11643 0.94017 1.25674 0.96780 0.97883 0.97194 1.70000 1.45630 1.09369 1.32771 0.85957 0.79817 0.78220 0.79136 1.17663 1.22212 1.18166 0.89795 0.88595 0.90450 0.67387 0.93471 0.89738 0.88683 0.93457 0.92163 0.90954 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 9.80 71.24 0.70 -1.38 16 2 C 0.07 2.14 7.16 41.83 0.30 2.44 16 3 N -0.52 -13.18 11.26 -303.12 -3.41 -16.59 16 4 C 0.22 3.99 13.21 130.42 1.72 5.72 16 5 O -0.19 -4.77 7.50 -7.11 -0.05 -4.82 16 6 C -0.13 -4.26 6.79 24.05 0.16 -4.10 16 7 C 0.59 24.40 7.64 86.46 0.66 25.06 16 8 O -0.56 -26.36 14.23 -4.28 -0.06 -26.42 16 9 N -0.58 -24.49 2.75 -831.48 -2.29 -26.78 16 10 C 0.09 2.85 8.86 127.77 1.13 3.99 16 11 C 0.23 11.13 2.22 44.25 0.10 11.23 16 12 H 0.04 2.13 5.96 -2.39 -0.01 2.12 16 13 C -0.16 -6.27 8.66 71.98 0.62 -5.64 16 14 C -0.53 -29.98 8.95 25.60 0.23 -29.75 16 15 H 0.04 2.60 7.89 -2.91 -0.02 2.57 16 16 C 0.02 1.36 5.45 84.66 0.46 1.82 16 17 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 18 Si 0.94 44.18 24.37 68.60 1.67 45.85 16 19 H -0.25 -10.73 6.87 99.48 0.68 -10.05 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.26 -11.76 6.53 99.48 0.65 -11.11 16 22 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.08 2.36 6.64 -2.39 -0.02 2.35 16 25 H 0.31 1.21 8.06 -2.91 -0.02 1.19 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 2.71 6.44 -2.39 -0.02 2.70 16 28 H 0.10 2.56 5.41 -2.39 -0.01 2.55 16 29 H 0.05 1.96 3.27 -2.39 -0.01 1.95 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.68 6.67 -2.39 -0.02 2.66 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -73.41 264.53 3.31 -70.10 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.06 Total: 6.43 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.09 Total: 9.38 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -5.40 Total: -100.53 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.11 Total: -31.24 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -73.41 3.31 -70.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093232576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.925 kcal (2) G-P(sol) polarization free energy of solvation -73.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds