Wall clock time and date at job start Sun Mar 29 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30619 * 125.42770 * 2 1 4 4 C 1.33684 * 108.99989 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.27794 * 179.73373 * 4 3 2 6 6 C 1.36348 * 107.45107 * 0.02562 * 4 3 2 7 7 C 1.46720 * 126.64276 * 179.97438 * 6 4 3 8 8 O 1.21684 * 120.00155 * 352.61145 * 7 6 4 9 9 N 1.34776 * 120.00099 * 172.60720 * 7 6 4 10 10 C 1.46504 * 119.99974 * 3.63754 * 9 7 6 11 11 C 1.46498 * 120.00335 * 183.63285 * 9 7 6 12 12 C 1.50701 * 109.46840 * 89.99806 * 11 9 7 13 13 H 1.08001 * 120.00464 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99990 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00143 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00225 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46810 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46763 * 120.00399 * 16 14 12 19 19 H 1.48498 * 109.47154 * 240.00475 * 16 14 12 20 20 O 1.33667 * 125.41973 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47111 * 90.02076 * 1 2 3 22 22 H 1.08994 * 109.46872 * 210.02816 * 1 2 3 23 23 H 1.09002 * 109.46992 * 330.02202 * 1 2 3 24 24 H 1.08999 * 109.46737 * 90.02435 * 5 4 3 25 25 H 1.08995 * 109.47302 * 210.02819 * 5 4 3 26 26 H 1.09005 * 109.46643 * 330.03151 * 5 4 3 27 27 H 1.09003 * 109.46953 * 83.96475 * 10 9 7 28 28 H 1.09000 * 109.47202 * 203.96736 * 10 9 7 29 29 H 1.08997 * 109.46906 * 323.96475 * 10 9 7 30 30 H 1.08995 * 109.47681 * 210.00276 * 11 9 7 31 31 H 1.09007 * 109.47340 * 330.00826 * 11 9 7 32 32 H 0.97002 * 120.00650 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2642 1.0643 0.0000 4 6 3.5464 0.6863 0.0006 5 6 4.7453 1.5994 -0.0049 6 6 3.5708 -0.6770 0.0003 7 6 4.7635 -1.5315 0.0003 8 8 5.8667 -1.0363 -0.1351 9 7 4.6372 -2.8649 0.1502 10 6 3.3054 -3.4698 0.2333 11 6 5.8315 -3.7095 0.2300 12 6 6.2578 -3.8418 1.6694 13 1 5.6952 -3.3467 2.4470 14 6 7.3657 -4.5959 1.9937 15 7 8.0506 -5.1992 1.0470 16 14 7.8938 -4.7605 3.7780 17 1 6.9629 -3.9918 4.6426 18 1 7.8666 -6.1920 4.1721 19 1 9.2712 -4.2292 3.9376 20 8 2.2817 -1.0893 0.0005 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 5.0355 1.8240 1.0215 25 1 5.5729 1.1093 -0.5176 26 1 4.4944 2.5253 -0.5224 27 1 2.9181 -3.6352 -0.7721 28 1 3.3713 -4.4226 0.7587 29 1 2.6361 -2.8016 0.7752 30 1 5.6065 -4.6963 -0.1745 31 1 6.6370 -3.2553 -0.3471 32 1 8.8302 -5.7294 1.2751 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097050849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:03 Heat of formation + Delta-G solvation = -13.621259 kcal Electronic energy + Delta-G solvation = -16983.481455 eV Core-core repulsion = 14139.147918 eV Total energy + Delta-G solvation = -2844.333536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.26300 -38.82714 -35.60225 -34.58177 -32.81655 -32.46496 -29.27973 -28.36377 -27.05144 -25.60380 -23.22632 -21.70156 -21.20549 -19.42541 -17.00604 -16.80340 -16.49585 -15.65094 -15.49490 -14.45422 -14.32185 -14.10377 -13.35178 -13.23708 -13.03769 -12.82669 -12.69170 -12.45825 -12.20112 -11.94506 -11.72480 -11.28883 -10.92835 -10.82293 -10.72346 -10.49421 -10.20852 -9.69671 -9.34562 -8.59561 -8.49387 -7.76459 -6.10168 -4.15715 1.11010 2.56519 2.62254 3.27155 3.34709 3.38742 3.63288 3.80261 4.03698 4.40588 4.86501 4.93639 5.16610 5.20664 5.24304 5.33585 5.62391 5.71196 5.81135 5.87388 5.91398 6.05537 6.09898 6.31660 6.53759 6.92718 7.31495 7.39783 7.72188 7.85673 8.14063 8.20784 8.71246 8.91367 9.49656 10.97934 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033866 B = 0.006379 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.600686 B = 4388.417336 C = 4643.528568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.490 5.490 4 C 0.062 3.938 5 C -0.079 4.079 6 C -0.094 4.094 7 C 0.592 3.408 8 O -0.515 6.515 9 N -0.586 5.586 10 C 0.080 3.920 11 C 0.244 3.756 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.900 3.100 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.281 1.281 20 O -0.182 6.182 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 7.466 -2.341 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.014 4.014 3 N -0.221 5.221 4 C -0.062 4.062 5 C -0.136 4.136 6 C -0.150 4.150 7 C 0.377 3.623 8 O -0.393 6.393 9 N -0.317 5.317 10 C -0.063 4.063 11 C 0.125 3.875 12 C -0.569 4.569 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.207 1.207 20 O -0.069 6.069 21 H 0.112 0.888 22 H 0.108 0.892 23 H 0.118 0.882 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.778 8.087 -2.444 16.162 hybrid contribution 0.415 -0.932 1.035 1.453 sum -13.362 7.156 -1.410 15.223 Atomic orbital electron populations 1.20277 0.81299 1.05157 1.04673 1.26474 0.96663 0.79473 0.98761 1.70253 1.01791 1.30192 1.19855 1.21975 0.93217 0.91470 0.99542 1.20364 0.92584 0.97118 1.03533 1.23524 0.82300 0.95442 1.13688 1.16446 0.84923 0.81968 0.78933 1.90812 1.23886 1.73244 1.51376 1.48128 1.09205 1.05857 1.68483 1.21838 0.83992 0.99661 1.00859 1.19447 0.81184 0.88932 0.97912 1.21449 1.12121 1.30927 0.92418 0.92302 1.24930 0.95924 0.95275 0.97836 1.69936 1.18593 1.32417 1.32223 0.86414 0.78690 0.77698 0.84481 1.19785 1.20874 1.20735 1.84698 1.16570 1.36295 1.69328 0.88843 0.89182 0.88182 0.90370 0.88305 0.90971 0.93442 0.90163 0.91551 0.94430 0.93294 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.01 0.38 -0.06 16 2 C 0.19 2.64 8.32 -12.79 -0.11 2.53 16 3 N -0.49 -7.89 11.26 -7.07 -0.08 -7.97 16 4 C 0.06 1.09 7.16 -82.47 -0.59 0.50 16 5 C -0.08 -1.23 9.96 36.01 0.36 -0.87 16 6 C -0.09 -1.79 6.79 -36.84 -0.25 -2.04 16 7 C 0.59 13.23 7.64 -12.84 -0.10 13.13 16 8 O -0.51 -12.85 14.33 5.20 0.07 -12.77 16 9 N -0.59 -13.07 2.86 -184.49 -0.53 -13.59 16 10 C 0.08 1.39 9.65 59.85 0.58 1.97 16 11 C 0.24 6.39 5.16 -5.19 -0.03 6.36 16 12 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 16 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 O -0.18 -2.92 7.51 4.42 0.03 -2.88 16 21 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.10 1.68 6.34 -51.93 -0.33 1.36 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 29 H 0.07 1.07 5.43 -51.93 -0.28 0.79 16 30 H 0.04 0.98 8.07 -51.93 -0.42 0.57 16 31 H 0.05 1.42 7.37 -51.93 -0.38 1.04 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 280.32 15.07 4.22 4.22 Total: -1.00 -33.11 280.32 -4.65 -37.76 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -3.91 Total: -3.81 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -0.18 Total: 7.86 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.13 Total: -47.09 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.11 Total: -15.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.11 -4.65 -37.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097050849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.140 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds