Wall clock time and date at job start Sun Mar 29 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34251 * 126.52189 * 2 1 4 4 C 1.34051 * 108.23023 * 179.87283 * 3 2 1 5 5 N 1.29938 * 109.23500 * 0.40165 * 4 3 2 6 6 C 1.36067 * 108.47966 * 359.75655 * 5 4 3 7 7 C 1.47419 * 126.44754 * 179.97438 * 6 5 4 8 8 O 1.21609 * 120.00228 * 175.11354 * 7 6 5 9 9 N 1.34784 * 119.99958 * 355.12174 * 7 6 5 10 10 C 1.46503 * 119.99962 * 2.50916 * 9 7 6 11 11 C 1.46496 * 119.99810 * 182.51963 * 9 7 6 12 12 H 1.09001 * 109.47260 * 359.97438 * 11 9 7 13 13 C 1.53002 * 109.47278 * 119.99563 * 11 9 7 14 14 C 1.50695 * 109.47119 * 239.99336 * 11 9 7 15 15 H 1.08005 * 119.99955 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00477 * 179.97438 * 14 11 9 17 17 N 1.31521 * 119.99751 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00447 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46827 * 89.99999 * 18 16 14 20 20 H 1.48495 * 109.46937 * 210.00314 * 18 16 14 21 21 H 1.48494 * 109.46710 * 330.00058 * 18 16 14 22 22 H 1.09000 * 109.47563 * 269.68387 * 1 2 3 23 23 H 1.09004 * 109.47621 * 29.68703 * 1 2 3 24 24 H 1.09003 * 109.47158 * 149.68361 * 1 2 3 25 25 H 1.07992 * 125.38210 * 180.15993 * 4 3 2 26 26 H 1.09002 * 109.46545 * 83.89339 * 10 9 7 27 27 H 1.08998 * 109.47169 * 203.89050 * 10 9 7 28 28 H 1.08994 * 109.47364 * 323.89566 * 10 9 7 29 29 H 1.08997 * 109.47199 * 180.02562 * 13 11 9 30 30 H 1.09000 * 109.46886 * 299.99633 * 13 11 9 31 31 H 1.09001 * 109.46941 * 59.99847 * 13 11 9 32 32 H 0.97000 * 119.99879 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6582 0.0028 5 7 3.6002 -0.6410 -0.0040 6 6 2.3169 -1.0935 -0.0061 7 6 1.8853 -2.5031 -0.0139 8 8 0.7040 -2.7779 0.0747 9 7 2.8001 -3.4874 -0.1191 10 6 4.2269 -3.1590 -0.1704 11 6 2.3675 -4.8856 -0.1825 12 1 1.2797 -4.9321 -0.1308 13 6 2.8430 -5.5075 -1.4971 14 6 2.9581 -5.6471 0.9760 15 1 3.5919 -5.1402 1.6885 16 6 2.6885 -6.9908 1.1270 17 7 1.9154 -7.6079 0.2602 18 14 3.4200 -7.9347 2.5635 19 1 2.4916 -7.8723 3.7209 20 1 3.6270 -9.3517 2.1707 21 1 4.7228 -7.3302 2.9408 22 1 -0.3634 -0.0057 1.0276 23 1 -0.3634 0.8928 -0.5090 24 1 -0.3634 -0.8872 -0.5188 25 1 4.4488 1.2979 0.0060 26 1 4.6072 -3.0329 0.8433 27 1 4.7681 -3.9663 -0.6637 28 1 4.3669 -2.2334 -0.7286 29 1 2.5208 -6.5477 -1.5444 30 1 2.4158 -4.9567 -2.3351 31 1 3.9308 -5.4610 -1.5484 32 1 1.7260 -8.5533 0.3662 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440914.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:49 Heat of formation + Delta-G solvation = -26.070117 kcal Electronic energy + Delta-G solvation = -17185.680018 eV Core-core repulsion = 14340.806658 eV Total energy + Delta-G solvation = -2844.873359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.38952 -40.57046 -37.24373 -35.95104 -34.64859 -33.31886 -31.41781 -28.39596 -27.56702 -27.28898 -25.09042 -23.35261 -22.13448 -20.49377 -18.62378 -18.30000 -17.85365 -17.53961 -16.88318 -16.18377 -15.99129 -15.57843 -14.86500 -14.54246 -14.35707 -14.06744 -13.81446 -13.61122 -13.48171 -13.00818 -12.94497 -12.74946 -12.68334 -12.31588 -12.21225 -12.11889 -11.41627 -11.21328 -10.81764 -10.53664 -9.96943 -9.31477 -8.16661 -6.33364 0.12146 1.16795 1.40084 1.41087 1.51781 1.64064 2.25202 2.33612 2.46053 3.10701 3.19364 3.69441 3.80783 4.27615 4.42189 4.53008 4.59689 4.76807 4.79354 4.86179 4.89152 5.00000 5.04070 5.14951 5.38694 5.43498 5.60261 5.65774 5.98965 6.13162 6.50541 6.72284 6.77539 7.22355 7.40944 8.87907 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037473 B = 0.006593 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.026668 B = 4245.611373 C = 4417.949230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.042 3.958 3 O -0.195 6.195 4 C 0.194 3.806 5 N -0.490 5.490 6 C -0.100 4.100 7 C 0.572 3.428 8 O -0.586 6.586 9 N -0.585 5.585 10 C 0.094 3.906 11 C 0.261 3.739 12 H 0.016 0.984 13 C -0.132 4.132 14 C -0.542 4.542 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.966 3.034 19 H -0.280 1.280 20 H -0.275 1.275 21 H -0.266 1.266 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.310 0.690 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.045 0.955 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 17.078 -1.525 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.015 4.015 3 O -0.082 6.082 4 C -0.034 4.034 5 N -0.218 5.218 6 C -0.217 4.217 7 C 0.361 3.639 8 O -0.468 6.468 9 N -0.313 5.313 10 C -0.048 4.048 11 C 0.159 3.841 12 H 0.034 0.966 13 C -0.191 4.191 14 C -0.580 4.580 15 H 0.072 0.928 16 C -0.182 4.182 17 N -0.554 5.554 18 Si 0.791 3.209 19 H -0.206 1.206 20 H -0.200 1.200 21 H -0.190 1.190 22 H 0.117 0.883 23 H 0.130 0.870 24 H 0.105 0.895 25 H 0.324 0.676 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.892 16.342 -1.539 16.870 hybrid contribution -0.206 -0.570 0.712 0.935 sum 3.685 15.773 -0.826 16.219 Atomic orbital electron populations 1.20582 0.81457 1.05494 1.05245 1.23940 0.96002 0.83021 0.98522 1.84381 1.19011 1.35205 1.69635 1.29376 0.85839 0.91004 0.97169 1.70862 1.20810 1.11484 1.18693 1.21351 0.90344 0.94646 1.15400 1.17395 0.85273 0.84052 0.77220 1.90682 1.17966 1.83937 1.54257 1.48099 1.07801 1.07057 1.68380 1.21969 0.79325 1.02003 1.01552 1.18651 0.94877 0.75949 0.94594 0.96562 1.21889 0.99524 1.02288 0.95367 1.21528 1.31247 0.94786 1.10455 0.92810 1.25722 0.95268 0.98218 0.99032 1.70009 1.37397 1.11050 1.36951 0.85439 0.78813 0.77812 0.78867 1.20589 1.20042 1.18996 0.88317 0.86978 0.89507 0.67568 0.94050 0.91915 0.87635 0.90859 0.95975 0.93592 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 9.83 71.24 0.70 -1.02 16 2 C 0.04 1.21 7.44 25.18 0.19 1.40 16 3 O -0.20 -4.27 10.73 0.42 0.00 -4.27 16 4 C 0.19 3.61 13.20 130.52 1.72 5.33 16 5 N -0.49 -14.40 7.85 -305.16 -2.40 -16.80 16 6 C -0.10 -3.59 6.67 40.40 0.27 -3.32 16 7 C 0.57 26.63 7.67 86.66 0.66 27.30 16 8 O -0.59 -30.43 14.19 -4.06 -0.06 -30.48 16 9 N -0.58 -28.07 2.75 -830.69 -2.29 -30.36 16 10 C 0.09 3.71 8.79 127.77 1.12 4.84 16 11 C 0.26 14.43 2.62 44.25 0.12 14.54 16 12 H 0.02 1.05 6.90 -2.39 -0.02 1.03 16 13 C -0.13 -6.71 8.96 71.98 0.64 -6.07 16 14 C -0.54 -31.18 8.37 25.60 0.21 -30.96 16 15 H 0.05 3.08 7.65 -2.91 -0.02 3.06 16 16 C 0.02 0.98 5.30 84.65 0.45 1.43 16 17 N -0.92 -53.76 11.32 21.45 0.24 -53.51 16 18 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.09 2.59 6.59 -2.39 -0.02 2.57 16 25 H 0.31 1.43 8.06 -2.91 -0.02 1.40 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 2.45 6.44 -2.39 -0.02 2.43 16 28 H 0.11 3.68 5.34 -2.39 -0.01 3.67 16 29 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 2.15 6.67 -2.39 -0.02 2.13 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -74.00 271.15 4.76 -69.24 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.14 Total: 6.28 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.09 Total: 13.47 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.44 Total: -100.67 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.05 Total: -34.75 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.00 4.76 -69.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440914.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.172 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds