Wall clock time and date at job start Sun Mar 29 2020 22:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34255 * 126.52657 * 2 1 4 4 C 1.34057 * 108.22698 * 179.87496 * 3 2 1 5 5 N 1.29926 * 109.24272 * 0.39840 * 4 3 2 6 6 C 1.36067 * 108.47816 * 359.75857 * 5 4 3 7 7 C 1.47419 * 126.44941 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00277 * 175.04292 * 7 6 5 9 9 N 1.34773 * 120.00133 * 355.04409 * 7 6 5 10 10 C 1.46497 * 120.00128 * 2.50864 * 9 7 6 11 11 C 1.46505 * 120.00223 * 182.51086 * 9 7 6 12 12 H 1.08998 * 109.47122 * 359.97438 * 11 9 7 13 13 C 1.52998 * 109.46972 * 240.00008 * 11 9 7 14 14 C 1.50694 * 109.47322 * 120.00123 * 11 9 7 15 15 H 1.08002 * 120.00083 * 34.70177 * 14 11 9 16 16 C 1.37882 * 120.00172 * 214.71132 * 14 11 9 17 17 N 1.31514 * 119.99974 * 184.47739 * 16 14 11 18 18 Si 1.86799 * 119.99649 * 4.47276 * 16 14 11 19 19 H 1.48496 * 109.47239 * 94.38797 * 18 16 14 20 20 H 1.48503 * 109.46644 * 214.38532 * 18 16 14 21 21 H 1.48502 * 109.47182 * 334.38138 * 18 16 14 22 22 H 1.08991 * 109.47197 * 269.68808 * 1 2 3 23 23 H 1.09004 * 109.46526 * 29.68740 * 1 2 3 24 24 H 1.08996 * 109.47077 * 149.67918 * 1 2 3 25 25 H 1.07996 * 125.37820 * 180.13834 * 4 3 2 26 26 H 1.09012 * 109.47127 * 83.87817 * 10 9 7 27 27 H 1.08994 * 109.47507 * 203.87709 * 10 9 7 28 28 H 1.08997 * 109.47325 * 323.88075 * 10 9 7 29 29 H 1.08993 * 109.47225 * 294.95472 * 13 11 9 30 30 H 1.09001 * 109.47251 * 54.95719 * 13 11 9 31 31 H 1.09002 * 109.46881 * 174.95220 * 13 11 9 32 32 H 0.97001 * 119.99831 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0028 5 7 3.6002 -0.6411 -0.0040 6 6 2.3170 -1.0936 -0.0060 7 6 1.8853 -2.5032 -0.0128 8 8 0.7040 -2.7778 0.0771 9 7 2.7998 -3.4875 -0.1184 10 6 4.2265 -3.1593 -0.1713 11 6 2.3671 -4.8858 -0.1806 12 1 1.2794 -4.9323 -0.1276 13 6 2.9679 -5.6583 0.9956 14 6 2.8341 -5.4992 -1.4754 15 1 3.7801 -5.2019 -1.9035 16 6 2.0537 -6.4397 -2.1137 17 7 2.4998 -7.0394 -3.1959 18 14 0.3630 -6.8622 -1.4413 19 1 -0.6637 -6.0408 -2.1315 20 1 0.0834 -8.3020 -1.6741 21 1 0.3251 -6.5800 0.0161 22 1 -0.3633 -0.0056 1.0276 23 1 -0.3632 0.8928 -0.5090 24 1 -0.3633 -0.8871 -0.5188 25 1 4.4489 1.2976 0.0056 26 1 4.6080 -3.0325 0.8420 27 1 4.7672 -3.9670 -0.6646 28 1 4.3661 -2.2341 -0.7304 29 1 4.0527 -5.6881 0.8945 30 1 2.7035 -5.1619 1.9293 31 1 2.5753 -6.6751 1.0008 32 1 1.9506 -7.7008 -3.6451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:52 Heat of formation + Delta-G solvation = -1.998849 kcal Electronic energy + Delta-G solvation = -17284.053562 eV Core-core repulsion = 14440.224011 eV Total energy + Delta-G solvation = -2843.829551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.30154 -38.95083 -35.47412 -34.74795 -32.53878 -32.22521 -30.29687 -27.25073 -25.99214 -25.23268 -23.71927 -22.11158 -20.54842 -18.88510 -17.33398 -16.82099 -16.75631 -15.89942 -15.36123 -14.72219 -14.38772 -13.95841 -13.46752 -13.03392 -12.94210 -12.47580 -12.45464 -12.30187 -12.21462 -11.74416 -11.37775 -11.15593 -11.02969 -10.72578 -10.44398 -10.11856 -9.70084 -9.29358 -9.15069 -8.77988 -8.58635 -7.58482 -6.14950 -4.16907 1.29909 2.28703 2.67448 3.31010 3.39597 3.46110 3.74316 3.88257 4.23476 4.39686 4.80115 5.04300 5.24442 5.29121 5.52283 5.55397 5.92734 6.03801 6.13251 6.24747 6.29058 6.34268 6.47042 6.61710 6.80609 6.96763 7.12211 7.47846 7.61334 7.67521 8.17988 8.52142 8.86022 8.92064 9.47242 10.96961 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.007776 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.010169 B = 3600.141903 C = 3958.407651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.028 3.972 3 O -0.205 6.205 4 C 0.158 3.842 5 N -0.453 5.453 6 C -0.059 4.059 7 C 0.584 3.416 8 O -0.555 6.555 9 N -0.567 5.567 10 C 0.081 3.919 11 C 0.219 3.781 12 H 0.068 0.932 13 C -0.145 4.145 14 C -0.524 4.524 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.892 5.892 18 Si 0.874 3.126 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.259 1.259 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.112 0.888 25 H 0.251 0.749 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.055 0.945 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 14.431 7.114 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.028 4.028 3 O -0.092 6.092 4 C -0.069 4.069 5 N -0.183 5.183 6 C -0.179 4.179 7 C 0.370 3.630 8 O -0.436 6.436 9 N -0.296 5.296 10 C -0.062 4.062 11 C 0.119 3.881 12 H 0.086 0.914 13 C -0.204 4.204 14 C -0.562 4.562 15 H 0.097 0.903 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.701 3.299 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.183 1.183 22 H 0.107 0.893 23 H 0.094 0.906 24 H 0.130 0.870 25 H 0.267 0.733 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.409 13.732 7.005 15.422 hybrid contribution -0.974 0.224 0.159 1.012 sum -0.565 13.956 7.165 15.698 Atomic orbital electron populations 1.20527 0.82788 1.05099 1.04405 1.23699 0.95121 0.83319 1.00672 1.84320 1.18610 1.36460 1.69822 1.28100 0.85207 0.91800 1.01841 1.71021 1.21858 1.09220 1.16194 1.21844 0.88333 0.96284 1.11439 1.16839 0.85732 0.82388 0.78055 1.90706 1.16573 1.82908 1.53414 1.48178 1.06473 1.07389 1.67517 1.21967 0.81166 1.02382 1.00722 1.19467 0.97319 0.76178 0.95145 0.91445 1.22197 1.01140 1.00037 0.97017 1.21143 1.07212 1.22536 1.05323 0.90293 1.24964 0.97898 0.95322 0.94326 1.69898 1.37566 1.26532 1.18868 0.86881 0.85010 0.77452 0.80604 1.19908 1.21230 1.18343 0.89311 0.90585 0.86956 0.73340 0.94168 0.90927 0.89456 0.93084 0.95498 0.92603 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.83 36.00 0.35 -0.55 16 2 C 0.03 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.21 -2.63 10.73 6.50 0.07 -2.56 16 4 C 0.16 1.80 13.19 51.96 0.69 2.49 16 5 N -0.45 -7.12 7.85 -11.48 -0.09 -7.21 16 6 C -0.06 -1.07 6.67 -83.02 -0.55 -1.63 16 7 C 0.58 12.88 7.67 -12.52 -0.10 12.78 16 8 O -0.56 -13.27 14.20 5.27 0.07 -13.20 16 9 N -0.57 -12.86 2.75 -176.54 -0.49 -13.35 16 10 C 0.08 1.57 8.68 59.85 0.52 2.09 16 11 C 0.22 5.48 2.25 -69.08 -0.16 5.32 16 12 H 0.07 1.81 3.87 -51.93 -0.20 1.61 16 13 C -0.15 -3.19 9.10 37.16 0.34 -2.85 16 14 C -0.52 -14.76 8.69 -34.44 -0.30 -15.05 16 15 H 0.08 2.37 6.92 -52.49 -0.36 2.00 16 16 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 17 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 18 Si 0.87 22.19 27.28 -169.99 -4.64 17.55 16 19 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.26 -6.38 6.41 56.52 0.36 -6.01 16 22 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.11 1.66 6.60 -51.93 -0.34 1.32 16 25 H 0.25 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.07 1.46 6.64 -51.93 -0.34 1.12 16 28 H 0.09 1.62 5.34 -51.93 -0.28 1.34 16 29 H 0.05 1.06 7.84 -51.93 -0.41 0.65 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 270.64 15.07 4.08 4.08 Total: -1.00 -33.61 270.64 -3.43 -37.04 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -3.65 Total: -1.02 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 0.43 Total: 4.94 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.20 Total: -46.84 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.14 Total: -15.76 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.64 Total: 17.55 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.61 -3.43 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.038 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds