Wall clock time and date at job start Sun Mar 29 2020 22:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34255 * 126.52657 * 2 1 4 4 C 1.34057 * 108.22698 * 179.87496 * 3 2 1 5 5 N 1.29926 * 109.24272 * 0.39840 * 4 3 2 6 6 C 1.36067 * 108.47816 * 359.75857 * 5 4 3 7 7 C 1.47419 * 126.44941 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00277 * 175.04292 * 7 6 5 9 9 N 1.34773 * 120.00133 * 355.04409 * 7 6 5 10 10 C 1.46497 * 120.00128 * 2.50864 * 9 7 6 11 11 C 1.46505 * 120.00223 * 182.51086 * 9 7 6 12 12 H 1.08998 * 109.47122 * 359.97438 * 11 9 7 13 13 C 1.52998 * 109.46972 * 240.00008 * 11 9 7 14 14 C 1.50694 * 109.47322 * 120.00123 * 11 9 7 15 15 H 1.08002 * 120.00083 * 34.70177 * 14 11 9 16 16 C 1.37882 * 120.00172 * 214.71132 * 14 11 9 17 17 N 1.31514 * 119.99974 * 184.47739 * 16 14 11 18 18 Si 1.86799 * 119.99649 * 4.47276 * 16 14 11 19 19 H 1.48496 * 109.47239 * 94.38797 * 18 16 14 20 20 H 1.48503 * 109.46644 * 214.38532 * 18 16 14 21 21 H 1.48502 * 109.47182 * 334.38138 * 18 16 14 22 22 H 1.08991 * 109.47197 * 269.68808 * 1 2 3 23 23 H 1.09004 * 109.46526 * 29.68740 * 1 2 3 24 24 H 1.08996 * 109.47077 * 149.67918 * 1 2 3 25 25 H 1.07996 * 125.37820 * 180.13834 * 4 3 2 26 26 H 1.09012 * 109.47127 * 83.87817 * 10 9 7 27 27 H 1.08994 * 109.47507 * 203.87709 * 10 9 7 28 28 H 1.08997 * 109.47325 * 323.88075 * 10 9 7 29 29 H 1.08993 * 109.47225 * 294.95472 * 13 11 9 30 30 H 1.09001 * 109.47251 * 54.95719 * 13 11 9 31 31 H 1.09002 * 109.46881 * 174.95220 * 13 11 9 32 32 H 0.97001 * 119.99831 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0028 5 7 3.6002 -0.6411 -0.0040 6 6 2.3170 -1.0936 -0.0060 7 6 1.8853 -2.5032 -0.0128 8 8 0.7040 -2.7778 0.0771 9 7 2.7998 -3.4875 -0.1184 10 6 4.2265 -3.1593 -0.1713 11 6 2.3671 -4.8858 -0.1806 12 1 1.2794 -4.9323 -0.1276 13 6 2.9679 -5.6583 0.9956 14 6 2.8341 -5.4992 -1.4754 15 1 3.7801 -5.2019 -1.9035 16 6 2.0537 -6.4397 -2.1137 17 7 2.4998 -7.0394 -3.1959 18 14 0.3630 -6.8622 -1.4413 19 1 -0.6637 -6.0408 -2.1315 20 1 0.0834 -8.3020 -1.6741 21 1 0.3251 -6.5800 0.0161 22 1 -0.3633 -0.0056 1.0276 23 1 -0.3632 0.8928 -0.5090 24 1 -0.3633 -0.8871 -0.5188 25 1 4.4489 1.2976 0.0056 26 1 4.6080 -3.0325 0.8420 27 1 4.7672 -3.9670 -0.6646 28 1 4.3661 -2.2341 -0.7304 29 1 4.0527 -5.6881 0.8945 30 1 2.7035 -5.1619 1.9293 31 1 2.5753 -6.6751 1.0008 32 1 1.9506 -7.7008 -3.6451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:52 Heat of formation + Delta-G solvation = -27.147141 kcal Electronic energy + Delta-G solvation = -17285.144074 eV Core-core repulsion = 14440.224011 eV Total energy + Delta-G solvation = -2844.920063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.39251 -40.63552 -37.26977 -35.94736 -34.60515 -33.33115 -32.16456 -28.43196 -27.58491 -27.28495 -25.08872 -23.34699 -22.02695 -20.44881 -19.27932 -18.34007 -17.89333 -17.56888 -16.88584 -16.24959 -15.84064 -15.61928 -14.87859 -14.63607 -14.37490 -14.16649 -14.04879 -13.79348 -13.65815 -13.19409 -13.06884 -12.90700 -12.70145 -12.43231 -12.23936 -11.81896 -11.46614 -11.23024 -10.84666 -10.78842 -9.97611 -9.32451 -8.38182 -6.43421 0.11330 1.15705 1.27647 1.33314 1.43575 1.63502 2.18442 2.27473 2.35683 3.00864 3.19371 3.68554 3.79031 4.27037 4.37226 4.49835 4.54985 4.59783 4.67342 4.72641 4.84219 4.88824 4.98542 5.08897 5.15121 5.30703 5.42444 5.50795 5.79488 6.11781 6.50733 6.61475 6.70198 7.16640 7.28262 8.77332 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.007776 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.010169 B = 3600.141903 C = 3958.407651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.042 3.958 3 O -0.196 6.196 4 C 0.193 3.807 5 N -0.489 5.489 6 C -0.100 4.100 7 C 0.575 3.425 8 O -0.585 6.585 9 N -0.582 5.582 10 C 0.090 3.910 11 C 0.220 3.780 12 H 0.049 0.951 13 C -0.138 4.138 14 C -0.524 4.524 15 H 0.049 0.951 16 C 0.028 3.972 17 N -0.934 5.934 18 Si 0.929 3.071 19 H -0.280 1.280 20 H -0.272 1.272 21 H -0.248 1.248 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.309 0.691 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 16.695 8.486 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.015 4.015 3 O -0.083 6.083 4 C -0.035 4.035 5 N -0.218 5.218 6 C -0.218 4.218 7 C 0.364 3.636 8 O -0.468 6.468 9 N -0.310 5.310 10 C -0.053 4.053 11 C 0.118 3.882 12 H 0.067 0.933 13 C -0.196 4.196 14 C -0.562 4.562 15 H 0.067 0.933 16 C -0.172 4.172 17 N -0.573 5.573 18 Si 0.753 3.247 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.171 1.171 22 H 0.122 0.878 23 H 0.127 0.873 24 H 0.104 0.896 25 H 0.323 0.677 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.426 15.996 8.392 18.069 hybrid contribution -0.872 -0.294 -0.279 0.962 sum -0.446 15.702 8.114 17.680 Atomic orbital electron populations 1.20589 0.81429 1.05374 1.05426 1.23966 0.96028 0.83049 0.98486 1.84384 1.19021 1.35274 1.69617 1.29359 0.85831 0.91040 0.97256 1.70871 1.20843 1.11447 1.18608 1.21356 0.90303 0.94743 1.15417 1.17354 0.85228 0.83992 0.77024 1.90668 1.17644 1.83889 1.54553 1.48145 1.07874 1.06738 1.68276 1.21993 0.79346 1.02058 1.01858 1.19278 0.96375 0.77913 0.94618 0.93276 1.22065 1.01416 0.99667 0.96488 1.21334 1.05988 1.22319 1.06576 0.93325 1.25685 1.01335 0.95492 0.94690 1.70002 1.39135 1.27740 1.20453 0.86001 0.80455 0.77686 0.80517 1.20604 1.19759 1.17126 0.87778 0.87288 0.89633 0.67675 0.92222 0.92633 0.88449 0.92324 0.93592 0.92592 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 9.83 71.24 0.70 -0.97 16 2 C 0.04 1.18 7.44 25.19 0.19 1.36 16 3 O -0.20 -4.25 10.73 0.34 0.00 -4.25 16 4 C 0.19 3.57 13.19 130.52 1.72 5.30 16 5 N -0.49 -14.17 7.85 -305.15 -2.40 -16.56 16 6 C -0.10 -3.52 6.67 40.41 0.27 -3.25 16 7 C 0.58 25.49 7.67 86.66 0.66 26.15 16 8 O -0.58 -28.33 14.20 -4.08 -0.06 -28.39 16 9 N -0.58 -26.54 2.75 -830.70 -2.29 -28.83 16 10 C 0.09 3.46 8.68 127.77 1.11 4.57 16 11 C 0.22 11.06 2.25 44.24 0.10 11.16 16 12 H 0.05 2.66 3.87 -2.39 -0.01 2.65 16 13 C -0.14 -5.94 9.10 71.98 0.65 -5.29 16 14 C -0.52 -30.27 8.69 25.60 0.22 -30.05 16 15 H 0.05 3.04 6.92 -2.91 -0.02 3.02 16 16 C 0.03 1.62 5.47 84.66 0.46 2.09 16 17 N -0.93 -58.11 13.96 21.45 0.30 -57.81 16 18 Si 0.93 46.34 27.28 68.60 1.87 48.21 16 19 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.25 -11.78 6.41 99.48 0.64 -11.14 16 22 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.09 2.51 6.60 -2.39 -0.02 2.50 16 25 H 0.31 1.47 8.06 -2.91 -0.02 1.44 16 26 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 2.28 6.64 -2.39 -0.02 2.27 16 28 H 0.10 3.56 5.34 -2.39 -0.01 3.55 16 29 H 0.06 2.39 7.84 -2.39 -0.02 2.38 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -75.25 270.64 4.59 -70.65 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.07 Total: 5.90 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.09 Total: 11.08 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.38 Total: -103.20 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.87 Total: 48.21 kcal Total: -75.25 4.59 -70.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.507 kcal (2) G-P(sol) polarization free energy of solvation -75.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds