Wall clock time and date at job start Sun Mar 29 2020 22:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38129 * 126.29477 * 2 1 4 4 C 1.47288 * 126.42603 * 359.97438 * 3 2 1 5 5 O 1.21520 * 119.99827 * 0.02562 * 4 3 2 6 6 O 1.34753 * 119.99755 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99971 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47249 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47283 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00099 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00419 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99198 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00191 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47346 * 59.99603 * 13 11 9 15 15 H 1.48496 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47134 * 299.99608 * 13 11 9 17 17 C 1.41339 * 107.14276 * 179.97438 * 3 2 1 18 18 N 1.30423 * 108.01728 * 0.02562 * 17 3 2 19 19 N 1.34224 * 126.29500 * 179.68623 * 2 1 3 20 20 C 1.46496 * 125.74348 * 0.02888 * 19 2 1 21 21 H 1.09002 * 109.47152 * 89.99848 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99949 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99930 * 1 2 3 24 24 H 1.09002 * 109.46876 * 300.00045 * 7 6 4 25 25 H 1.08997 * 109.47017 * 60.00217 * 7 6 4 26 26 H 1.08995 * 109.47012 * 300.00462 * 8 7 6 27 27 H 1.08997 * 109.47016 * 60.00115 * 8 7 6 28 28 H 0.97003 * 119.99272 * 180.02562 * 12 11 9 29 29 H 1.07999 * 125.98784 * 179.97438 * 17 3 2 30 30 H 1.08995 * 109.47446 * 89.99590 * 20 19 2 31 31 H 1.09002 * 109.46619 * 209.99805 * 20 19 2 32 32 H 1.08998 * 109.46936 * 329.99356 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7018 2.7873 -0.0006 6 8 2.8014 3.5096 0.0001 7 6 2.2982 4.8717 0.0001 8 6 3.4745 5.8500 0.0001 9 6 2.9523 7.2635 -0.0005 10 1 1.8878 7.4460 -0.0013 11 6 3.8334 8.3241 -0.0011 12 7 5.1296 8.1019 -0.0016 13 14 3.1860 10.0763 -0.0012 14 1 2.3583 10.2982 1.2115 15 1 4.3277 11.0258 -0.0025 16 1 2.3573 10.2978 -1.2134 17 6 3.6598 0.6496 0.0006 18 7 3.6340 -0.6544 0.0004 19 7 2.3016 -1.0818 0.0059 20 6 1.8498 -2.4753 0.0130 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.6907 5.0345 -0.8902 25 1 1.6900 5.0342 0.8898 26 1 4.0824 5.6872 0.8901 27 1 4.0824 5.6873 -0.8898 28 1 5.7495 8.8481 -0.0017 29 1 4.5460 1.2669 0.0004 30 1 1.7381 -2.8263 -1.0129 31 1 2.5842 -3.0927 0.5303 32 1 0.8910 -2.5438 0.5269 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105811829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:57 Heat of formation + Delta-G solvation = -23.902538 kcal Electronic energy + Delta-G solvation = -16174.320271 eV Core-core repulsion = 13329.540905 eV Total energy + Delta-G solvation = -2844.779366 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52011 -39.34058 -35.89948 -33.85382 -33.25153 -32.09429 -30.25034 -27.86888 -27.02018 -24.96214 -22.77765 -21.15541 -20.54140 -19.49606 -17.63026 -16.43572 -16.16776 -15.75995 -15.54160 -15.46657 -14.50507 -14.35327 -13.54445 -13.47210 -13.03055 -12.90318 -12.64668 -12.61010 -12.32512 -12.28582 -11.15721 -11.06729 -10.89229 -10.66961 -10.61979 -10.06869 -9.56047 -9.55163 -9.52593 -9.25926 -8.71872 -8.39318 -6.05922 -4.09954 1.36416 2.14071 2.15696 3.33206 3.34773 3.37488 3.45250 3.48403 4.31385 4.38976 4.45147 4.75030 4.80835 4.98136 5.09122 5.26347 5.30544 5.34619 5.55593 5.76622 5.92038 6.18694 6.20842 6.40588 6.65921 6.72153 7.12095 7.45251 7.62618 7.69391 7.92708 8.27314 8.42106 8.95508 9.54000 11.05610 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.059551 B = 0.004245 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.074425 B = 6594.821650 C = 7033.839967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.157 3.843 3 C -0.278 4.278 4 C 0.538 3.462 5 O -0.530 6.530 6 O -0.353 6.353 7 C 0.078 3.922 8 C 0.024 3.976 9 C -0.526 4.526 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.900 3.100 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.109 3.891 18 N -0.306 5.306 19 N -0.366 5.366 20 C 0.097 3.903 21 H 0.088 0.912 22 H 0.107 0.893 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.263 0.737 29 H 0.201 0.799 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 -19.857 0.092 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.025 3.975 3 C -0.291 4.291 4 C 0.383 3.617 5 O -0.421 6.421 6 O -0.269 6.269 7 C 0.005 3.995 8 C -0.013 4.013 9 C -0.564 4.564 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.529 5.529 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.079 4.079 18 N -0.124 5.124 19 N -0.146 5.146 20 C -0.044 4.044 21 H 0.107 0.893 22 H 0.126 0.874 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.218 0.782 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.608 -20.873 0.094 21.894 hybrid contribution -0.754 1.737 -0.029 1.894 sum -7.362 -19.136 0.065 20.504 Atomic orbital electron populations 1.20723 0.85935 1.04894 1.04293 1.21480 0.94860 0.86296 0.94867 1.19242 0.93407 0.91004 1.25429 1.19887 0.83999 0.85334 0.72464 1.90740 1.18208 1.84980 1.48198 1.86561 1.39479 1.17780 1.83036 1.23606 0.99987 0.75000 1.00874 1.19161 0.92109 0.91126 0.98880 1.20957 0.93209 0.90117 1.52156 0.92317 1.24981 0.94799 0.99446 0.94929 1.69969 1.01306 1.31798 1.49795 0.86536 0.78328 0.83691 0.78754 1.20087 1.21167 1.20093 1.24279 0.97796 0.91327 0.94499 1.77233 0.95511 1.13488 1.26205 1.48344 1.04326 1.06220 1.55707 1.21943 1.01274 0.77340 1.03802 0.89333 0.87422 0.91035 0.92378 0.92372 0.95335 0.95337 0.92699 0.78237 0.90273 0.88814 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.57 36.01 0.34 -0.62 16 2 C 0.16 2.01 7.01 -81.59 -0.57 1.44 16 3 C -0.28 -4.39 6.13 -105.08 -0.64 -5.03 16 4 C 0.54 10.16 7.95 34.41 0.27 10.43 16 5 O -0.53 -10.62 14.63 -19.28 -0.28 -10.90 16 6 O -0.35 -7.37 10.07 -40.63 -0.41 -7.78 16 7 C 0.08 1.78 5.41 37.16 0.20 1.98 16 8 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 9 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 10 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 13 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.11 1.58 11.87 -16.97 -0.20 1.38 16 18 N -0.31 -4.27 12.50 30.87 0.39 -3.88 16 19 N -0.37 -4.23 3.98 -63.33 -0.25 -4.48 16 20 C 0.10 0.60 11.24 59.84 0.67 1.27 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.11 1.27 6.50 -51.93 -0.34 0.93 16 23 H 0.07 0.45 7.04 -51.93 -0.37 0.08 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.20 2.57 8.06 -52.49 -0.42 2.15 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.33 7.01 -51.93 -0.36 -0.03 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -33.58 286.07 -5.01 -38.59 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -3.99 Total: -4.24 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.48 Total: -2.30 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.87 Total: -34.23 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.69 Total: -18.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.58 -5.01 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105811829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.686 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds