Wall clock time and date at job start Sun Mar 29 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38129 * 126.29477 * 2 1 4 4 C 1.47288 * 126.42603 * 359.97438 * 3 2 1 5 5 O 1.21520 * 119.99827 * 0.02562 * 4 3 2 6 6 O 1.34753 * 119.99755 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99971 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47249 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47283 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00099 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00419 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99198 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00191 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47346 * 59.99603 * 13 11 9 15 15 H 1.48496 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47134 * 299.99608 * 13 11 9 17 17 C 1.41339 * 107.14276 * 179.97438 * 3 2 1 18 18 N 1.30423 * 108.01728 * 0.02562 * 17 3 2 19 19 N 1.34224 * 126.29500 * 179.68623 * 2 1 3 20 20 C 1.46496 * 125.74348 * 0.02888 * 19 2 1 21 21 H 1.09002 * 109.47152 * 89.99848 * 1 2 3 22 22 H 1.09001 * 109.46980 * 329.99949 * 1 2 3 23 23 H 1.09004 * 109.47113 * 209.99930 * 1 2 3 24 24 H 1.09002 * 109.46876 * 300.00045 * 7 6 4 25 25 H 1.08997 * 109.47017 * 60.00217 * 7 6 4 26 26 H 1.08995 * 109.47012 * 300.00462 * 8 7 6 27 27 H 1.08997 * 109.47016 * 60.00115 * 8 7 6 28 28 H 0.97003 * 119.99272 * 180.02562 * 12 11 9 29 29 H 1.07999 * 125.98784 * 179.97438 * 17 3 2 30 30 H 1.08995 * 109.47446 * 89.99590 * 20 19 2 31 31 H 1.09002 * 109.46619 * 209.99805 * 20 19 2 32 32 H 1.08998 * 109.46936 * 329.99356 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 -0.0005 5 8 0.7018 2.7873 -0.0006 6 8 2.8014 3.5096 0.0001 7 6 2.2982 4.8717 0.0001 8 6 3.4745 5.8500 0.0001 9 6 2.9523 7.2635 -0.0005 10 1 1.8878 7.4460 -0.0013 11 6 3.8334 8.3241 -0.0011 12 7 5.1296 8.1019 -0.0016 13 14 3.1860 10.0763 -0.0012 14 1 2.3583 10.2982 1.2115 15 1 4.3277 11.0258 -0.0025 16 1 2.3573 10.2978 -1.2134 17 6 3.6598 0.6496 0.0006 18 7 3.6340 -0.6544 0.0004 19 7 2.3016 -1.0818 0.0059 20 6 1.8498 -2.4753 0.0130 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.6907 5.0345 -0.8902 25 1 1.6900 5.0342 0.8898 26 1 4.0824 5.6872 0.8901 27 1 4.0824 5.6873 -0.8898 28 1 5.7495 8.8481 -0.0017 29 1 4.5460 1.2669 0.0004 30 1 1.7381 -2.8263 -1.0129 31 1 2.5842 -3.0927 0.5303 32 1 0.8910 -2.5438 0.5269 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105811829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:56 Heat of formation + Delta-G solvation = -45.534052 kcal Electronic energy + Delta-G solvation = -16175.258284 eV Core-core repulsion = 13329.540905 eV Total energy + Delta-G solvation = -2845.717379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.57140 -40.87651 -37.52872 -35.42277 -34.69992 -33.07540 -32.25444 -28.95161 -27.78714 -26.90671 -24.17469 -22.86308 -21.91983 -20.61624 -19.06036 -18.28549 -17.50756 -17.42736 -16.72084 -16.65679 -16.36387 -15.34034 -14.95609 -14.59925 -14.33740 -14.16128 -13.97922 -13.56306 -13.43816 -13.07728 -13.06686 -13.00267 -12.56545 -12.53409 -12.02094 -11.73693 -11.47757 -11.40755 -11.25834 -10.58355 -10.46348 -9.81826 -8.24472 -6.37738 0.27289 0.95799 1.28576 1.42949 1.46696 1.54649 1.94374 2.13828 2.43178 3.09789 3.48612 3.53007 3.85695 4.01152 4.28032 4.31023 4.33375 4.40285 4.49003 4.63002 4.68357 4.74285 4.88671 5.05224 5.26761 5.35566 5.50243 5.60619 5.77125 5.83297 6.09378 6.40500 6.75126 6.87668 7.31795 8.88070 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.059551 B = 0.004245 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.074425 B = 6594.821650 C = 7033.839967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.173 3.827 3 C -0.318 4.318 4 C 0.536 3.464 5 O -0.546 6.546 6 O -0.363 6.363 7 C 0.094 3.906 8 C 0.031 3.969 9 C -0.551 4.551 10 H 0.066 0.934 11 C 0.005 3.995 12 N -0.928 5.928 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.265 1.265 17 C 0.101 3.899 18 N -0.320 5.320 19 N -0.356 5.356 20 C 0.082 3.918 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.113 0.887 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.268 0.732 29 H 0.204 0.796 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -21.090 0.084 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.038 3.962 3 C -0.330 4.330 4 C 0.383 3.617 5 O -0.439 6.439 6 O -0.279 6.279 7 C 0.021 3.979 8 C -0.006 4.006 9 C -0.589 4.589 10 H 0.084 0.916 11 C -0.193 4.193 12 N -0.566 5.566 13 Si 0.798 3.202 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.086 4.086 18 N -0.139 5.139 19 N -0.134 5.134 20 C -0.056 4.056 21 H 0.121 0.879 22 H 0.104 0.896 23 H 0.132 0.868 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.076 0.924 29 H 0.220 0.780 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.279 -22.159 0.086 23.656 hybrid contribution -0.244 1.915 -0.028 1.930 sum -8.523 -20.245 0.058 21.966 Atomic orbital electron populations 1.20839 0.83488 1.05873 1.05414 1.21886 0.96161 0.85665 0.92487 1.19233 0.94737 0.89917 1.29160 1.20369 0.83563 0.85940 0.71779 1.90718 1.18573 1.85262 1.49307 1.86545 1.40332 1.17332 1.83728 1.23138 0.98045 0.75765 1.00979 1.18976 0.92860 0.92168 0.96643 1.21362 0.93805 0.91162 1.52533 0.91577 1.25982 0.94934 1.04356 0.94074 1.70100 1.02730 1.33429 1.50383 0.85360 0.77924 0.77584 0.79338 1.18996 1.20531 1.19014 1.24376 0.97762 0.91796 0.94652 1.77181 0.97314 1.12935 1.26486 1.48791 1.03256 1.07844 1.53550 1.22495 1.03008 0.74355 1.05765 0.87932 0.89616 0.86825 0.92191 0.92173 0.97564 0.97575 0.92368 0.77952 0.88329 0.87903 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 9.57 71.24 0.68 -0.93 16 2 C 0.17 4.09 7.01 42.17 0.30 4.39 16 3 C -0.32 -10.00 6.13 -20.16 -0.12 -10.12 16 4 C 0.54 20.63 7.95 70.20 0.56 21.19 16 5 O -0.55 -22.06 14.63 19.77 0.29 -21.77 16 6 O -0.36 -15.70 10.07 -56.63 -0.57 -16.27 16 7 C 0.09 4.40 5.41 71.98 0.39 4.79 16 8 C 0.03 1.70 5.35 29.85 0.16 1.86 16 9 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 10 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 11 C 0.01 0.31 5.46 84.66 0.46 0.78 16 12 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 13 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 C 0.10 2.98 11.87 85.67 1.02 4.00 16 18 N -0.32 -8.61 12.50 -56.25 -0.70 -9.31 16 19 N -0.36 -7.33 3.98 -354.28 -1.41 -8.74 16 20 C 0.08 0.69 11.24 127.77 1.44 2.13 16 21 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.09 1.88 6.50 -2.39 -0.02 1.87 16 23 H 0.11 0.89 7.04 -2.38 -0.02 0.87 16 24 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.20 5.48 8.06 -2.91 -0.02 5.46 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 0.27 7.01 -2.39 -0.02 0.25 16 Total: -1.00 -73.63 286.07 6.15 -67.48 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.12 Total: 2.09 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.11 Total: -3.50 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.83 Total: -74.13 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.28 Total: -38.04 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.63 6.15 -67.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105811829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.947 kcal (2) G-P(sol) polarization free energy of solvation -73.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds