Wall clock time and date at job start Sun Mar 29 2020 21:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31389 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48496 * 109.46997 * 89.99994 * 3 2 1 5 5 H 1.48498 * 109.47047 * 210.00154 * 3 2 1 6 6 H 1.48497 * 109.46960 * 330.00087 * 3 2 1 7 7 C 1.38898 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 154.98641 * 7 2 1 9 9 N 1.37511 * 120.00024 * 334.98153 * 7 2 1 10 10 C 1.34764 * 124.17515 * 327.04981 * 9 7 2 11 11 O 1.21236 * 127.16064 * 0.02562 * 10 9 7 12 12 C 1.51587 * 105.68233 * 179.97438 * 10 9 7 13 13 N 1.47310 * 103.59389 * 0.31971 * 12 10 9 14 14 C 1.46493 * 126.69352 * 179.77199 * 13 12 10 15 15 C 1.54274 * 110.03286 * 237.18450 * 14 13 12 16 16 C 1.54891 * 104.19608 * 217.10165 * 15 14 13 17 17 C 1.54886 * 102.74671 * 37.94456 * 16 15 14 18 18 C 1.53873 * 110.03619 * 120.01949 * 14 13 12 19 19 C 1.33790 * 124.17517 * 147.35040 * 9 7 2 20 20 O 1.21523 * 123.77383 * 359.96818 * 19 9 7 21 21 H 0.96998 * 119.99853 * 174.22886 * 1 2 3 22 22 H 1.09006 * 110.76626 * 241.71694 * 12 10 9 23 23 H 1.08992 * 110.56668 * 118.83072 * 12 10 9 24 24 H 1.08998 * 110.01862 * 358.62296 * 14 13 12 25 25 H 1.08997 * 110.48672 * 335.78450 * 15 14 13 26 26 H 1.09003 * 110.48553 * 98.42634 * 15 14 13 27 27 H 1.08997 * 110.75562 * 279.62710 * 16 15 14 28 28 H 1.09000 * 110.90866 * 156.33103 * 16 15 14 29 29 H 1.09002 * 110.48717 * 203.37734 * 17 16 15 30 30 H 1.09003 * 110.60380 * 80.79176 * 17 16 15 31 31 H 1.09000 * 110.03288 * 238.57279 * 18 14 13 32 32 H 1.08999 * 110.03047 * 359.94945 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0464 1.4000 5 1 3.5454 1.4402 -0.7001 6 1 1.4453 2.6526 -0.7000 7 6 2.0083 -1.2029 -0.0005 8 1 3.0124 -1.2466 -0.3961 9 7 1.4175 -2.3381 0.5026 10 6 0.5421 -2.3454 1.5272 11 8 0.1418 -1.3888 2.1552 12 6 0.1612 -3.7985 1.7304 13 7 0.9452 -4.5086 0.7051 14 6 0.9597 -5.9525 0.4585 15 6 2.3995 -6.4943 0.5760 16 6 2.4884 -7.5787 -0.5264 17 6 1.6691 -6.9568 -1.6844 18 6 0.4954 -6.2467 -0.9787 19 6 1.6451 -3.5724 0.0391 20 8 2.4009 -3.8203 -0.8797 21 1 -0.4850 -0.8358 -0.0845 22 1 -0.9064 -3.9448 1.5661 23 1 0.4438 -4.1324 2.7286 24 1 0.3100 -6.4594 1.1720 25 1 3.1223 -5.7001 0.3892 26 1 2.5619 -6.9357 1.5593 27 1 2.0347 -8.5105 -0.1891 28 1 3.5228 -7.7417 -0.8291 29 1 1.2985 -7.7357 -2.3508 30 1 2.2726 -6.2376 -2.2383 31 1 -0.3793 -6.8969 -0.9628 32 1 0.2584 -5.3150 -1.4925 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113006905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:30 Heat of formation + Delta-G solvation = -43.447303 kcal Electronic energy + Delta-G solvation = -17721.778808 eV Core-core repulsion = 14876.151918 eV Total energy + Delta-G solvation = -2845.626891 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26687 -38.18026 -36.80919 -34.85977 -34.11685 -31.60967 -28.56212 -28.50671 -26.09003 -24.83960 -21.61335 -21.16689 -20.50672 -18.97327 -17.85784 -16.25108 -16.09115 -15.61422 -15.35678 -14.58858 -14.13483 -13.87601 -13.68953 -13.35289 -13.05629 -12.90497 -12.76413 -11.70009 -11.57882 -11.37160 -10.97281 -10.94857 -10.90128 -10.78127 -10.39281 -10.28085 -10.17182 -9.55810 -9.17007 -8.88163 -8.36845 -8.10553 -6.72723 -4.20034 2.78472 3.09656 3.37680 3.41332 3.57437 4.13712 4.25440 4.49531 4.66893 4.77220 5.02438 5.17364 5.20197 5.36893 5.52447 5.59009 5.61676 5.72213 5.74688 5.80561 5.98375 6.00233 6.09866 6.29917 6.38202 6.56521 6.78420 7.23707 7.72363 7.89409 8.35087 8.51863 8.83853 9.21296 9.64470 10.59090 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040425 B = 0.007851 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.469903 B = 3565.417123 C = 3903.269358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.028 3.972 3 Si 1.089 2.911 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.433 4.433 8 H 0.096 0.904 9 N -0.413 5.413 10 C 0.462 3.538 11 O -0.480 6.480 12 C 0.064 3.936 13 N -0.638 5.638 14 C 0.182 3.818 15 C -0.137 4.137 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.676 3.324 20 O -0.557 6.557 21 H 0.272 0.728 22 H 0.098 0.902 23 H 0.100 0.900 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -12.918 1.487 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.185 4.185 3 Si 0.914 3.086 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.558 4.558 8 H 0.114 0.886 9 N -0.145 5.145 10 C 0.250 3.750 11 O -0.354 6.354 12 C -0.063 4.063 13 N -0.379 5.379 14 C 0.079 3.921 15 C -0.176 4.176 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.172 4.172 19 C 0.381 3.619 20 O -0.434 6.434 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.514 -10.958 1.346 11.052 hybrid contribution -0.027 -1.825 -0.002 1.825 sum 0.487 -12.783 1.344 12.863 Atomic orbital electron populations 1.70574 1.07355 1.31208 1.36989 1.26522 0.95916 1.02663 0.93375 0.83230 0.74554 0.73426 0.77387 1.20657 1.20774 1.20654 1.20277 1.01444 0.85234 1.48866 0.88582 1.42102 1.38585 1.06662 1.27102 1.20572 0.83256 0.89790 0.81359 1.90710 1.55936 1.39615 1.49090 1.22400 0.98018 0.92044 0.93841 1.47836 1.47357 1.05776 1.36952 1.21394 0.97041 0.76871 0.96780 1.22785 0.97233 0.99033 0.98541 1.22385 1.00214 0.97320 0.95672 1.22275 0.96822 0.99151 0.97390 1.22514 0.98044 1.01236 0.95441 1.16391 0.81883 0.81518 0.82086 1.90772 1.39925 1.82562 1.30113 0.91770 0.88389 0.88215 0.89202 0.89799 0.91720 0.91836 0.91601 0.92216 0.90684 0.91642 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.05 12.16 55.49 0.67 -24.37 16 2 C 0.03 0.81 4.66 -17.50 -0.08 0.73 16 3 Si 1.09 25.11 29.99 -169.99 -5.10 20.01 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.43 -12.56 9.38 -14.76 -0.14 -12.70 16 8 H 0.10 2.82 7.95 -52.48 -0.42 2.40 16 9 N -0.41 -11.01 2.52 -65.56 -0.17 -11.18 16 10 C 0.46 11.40 6.94 -10.55 -0.07 11.33 16 11 O -0.48 -13.38 15.52 5.60 0.09 -13.29 16 12 C 0.06 1.15 7.65 -4.32 -0.03 1.11 16 13 N -0.64 -11.97 2.87 -171.11 -0.49 -12.46 16 14 C 0.18 2.65 3.65 -66.81 -0.24 2.41 16 15 C -0.14 -1.93 6.33 -25.07 -0.16 -2.09 16 16 C -0.12 -1.41 6.91 -24.74 -0.17 -1.58 16 17 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 18 C -0.13 -1.92 6.13 -25.61 -0.16 -2.08 16 19 C 0.68 16.29 7.20 -88.02 -0.63 15.66 16 20 O -0.56 -14.52 15.83 5.35 0.08 -14.43 16 21 H 0.27 8.30 7.05 -40.82 -0.29 8.01 16 22 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 23 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 24 H 0.09 1.03 8.13 -51.93 -0.42 0.61 16 25 H 0.08 1.49 6.57 -51.93 -0.34 1.15 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.30 7.46 -51.93 -0.39 0.91 16 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -33.95 268.20 -6.76 -40.72 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.03 Total: -0.06 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -1.86 Total: 11.02 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.02 Total: -48.01 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: 0.17 Total: -27.72 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.10 Total: 20.01 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.95 -6.76 -40.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113006905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.731 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds