Wall clock time and date at job start Sun Mar 29 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31389 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48496 * 109.46997 * 89.99994 * 3 2 1 5 5 H 1.48498 * 109.47047 * 210.00154 * 3 2 1 6 6 H 1.48497 * 109.46960 * 330.00087 * 3 2 1 7 7 C 1.38898 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 154.98641 * 7 2 1 9 9 N 1.37511 * 120.00024 * 334.98153 * 7 2 1 10 10 C 1.34764 * 124.17515 * 327.04981 * 9 7 2 11 11 O 1.21236 * 127.16064 * 0.02562 * 10 9 7 12 12 C 1.51587 * 105.68233 * 179.97438 * 10 9 7 13 13 N 1.47310 * 103.59389 * 0.31971 * 12 10 9 14 14 C 1.46493 * 126.69352 * 179.77199 * 13 12 10 15 15 C 1.54274 * 110.03286 * 237.18450 * 14 13 12 16 16 C 1.54891 * 104.19608 * 217.10165 * 15 14 13 17 17 C 1.54886 * 102.74671 * 37.94456 * 16 15 14 18 18 C 1.53873 * 110.03619 * 120.01949 * 14 13 12 19 19 C 1.33790 * 124.17517 * 147.35040 * 9 7 2 20 20 O 1.21523 * 123.77383 * 359.96818 * 19 9 7 21 21 H 0.96998 * 119.99853 * 174.22886 * 1 2 3 22 22 H 1.09006 * 110.76626 * 241.71694 * 12 10 9 23 23 H 1.08992 * 110.56668 * 118.83072 * 12 10 9 24 24 H 1.08998 * 110.01862 * 358.62296 * 14 13 12 25 25 H 1.08997 * 110.48672 * 335.78450 * 15 14 13 26 26 H 1.09003 * 110.48553 * 98.42634 * 15 14 13 27 27 H 1.08997 * 110.75562 * 279.62710 * 16 15 14 28 28 H 1.09000 * 110.90866 * 156.33103 * 16 15 14 29 29 H 1.09002 * 110.48717 * 203.37734 * 17 16 15 30 30 H 1.09003 * 110.60380 * 80.79176 * 17 16 15 31 31 H 1.09000 * 110.03288 * 238.57279 * 18 14 13 32 32 H 1.08999 * 110.03047 * 359.94945 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0464 1.4000 5 1 3.5454 1.4402 -0.7001 6 1 1.4453 2.6526 -0.7000 7 6 2.0083 -1.2029 -0.0005 8 1 3.0124 -1.2466 -0.3961 9 7 1.4175 -2.3381 0.5026 10 6 0.5421 -2.3454 1.5272 11 8 0.1418 -1.3888 2.1552 12 6 0.1612 -3.7985 1.7304 13 7 0.9452 -4.5086 0.7051 14 6 0.9597 -5.9525 0.4585 15 6 2.3995 -6.4943 0.5760 16 6 2.4884 -7.5787 -0.5264 17 6 1.6691 -6.9568 -1.6844 18 6 0.4954 -6.2467 -0.9787 19 6 1.6451 -3.5724 0.0391 20 8 2.4009 -3.8203 -0.8797 21 1 -0.4850 -0.8358 -0.0845 22 1 -0.9064 -3.9448 1.5661 23 1 0.4438 -4.1324 2.7286 24 1 0.3100 -6.4594 1.1720 25 1 3.1223 -5.7001 0.3892 26 1 2.5619 -6.9357 1.5593 27 1 2.0347 -8.5105 -0.1891 28 1 3.5228 -7.7417 -0.8291 29 1 1.2985 -7.7357 -2.3508 30 1 2.2726 -6.2376 -2.2383 31 1 -0.3793 -6.8969 -0.9628 32 1 0.2584 -5.3150 -1.4925 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113006905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:29 Heat of formation + Delta-G solvation = -66.755062 kcal Electronic energy + Delta-G solvation = -17722.789509 eV Core-core repulsion = 14876.151918 eV Total energy + Delta-G solvation = -2846.637591 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.07038 -39.71566 -38.46704 -36.72741 -36.00637 -33.54026 -29.93293 -29.63756 -27.65631 -26.83792 -23.30670 -22.92532 -21.57787 -20.55523 -19.75027 -17.88738 -17.85221 -17.26965 -16.85861 -16.35353 -15.75807 -15.59423 -15.11937 -14.92276 -14.83824 -14.56366 -14.16154 -13.70957 -12.80571 -12.80431 -12.58455 -12.36587 -12.04817 -11.99366 -11.93633 -11.91108 -11.48996 -11.37026 -11.16007 -10.80976 -10.33840 -9.79013 -8.98731 -6.45589 0.92546 1.44956 1.55451 1.58413 1.78073 2.29555 2.39579 2.64197 3.03955 3.41382 3.64385 3.68048 3.97274 4.17583 4.28949 4.36501 4.49242 4.57321 4.58964 4.76051 4.85087 4.91345 5.04003 5.18973 5.26459 5.34034 5.50044 5.56961 5.77533 5.79018 6.19602 6.50543 6.95047 7.11657 7.65267 8.33418 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040425 B = 0.007851 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.469903 B = 3565.417123 C = 3903.269358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C -0.012 4.012 3 Si 1.133 2.867 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.271 1.271 7 C -0.458 4.458 8 H 0.078 0.922 9 N -0.441 5.441 10 C 0.451 3.549 11 O -0.522 6.522 12 C 0.081 3.919 13 N -0.621 5.621 14 C 0.171 3.829 15 C -0.139 4.139 16 C -0.108 4.108 17 C -0.121 4.121 18 C -0.134 4.134 19 C 0.668 3.332 20 O -0.591 6.591 21 H 0.256 0.744 22 H 0.136 0.864 23 H 0.147 0.853 24 H 0.143 0.857 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.104 0.896 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -15.418 2.835 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.219 4.219 3 Si 0.951 3.049 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.096 0.904 9 N -0.174 5.174 10 C 0.242 3.758 11 O -0.398 6.398 12 C -0.045 4.045 13 N -0.360 5.360 14 C 0.070 3.930 15 C -0.177 4.177 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.172 4.172 19 C 0.372 3.628 20 O -0.470 6.470 21 H 0.065 0.935 22 H 0.154 0.846 23 H 0.165 0.835 24 H 0.161 0.839 25 H 0.055 0.945 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.254 -13.529 2.702 13.799 hybrid contribution 0.220 -1.174 -0.429 1.269 sum -0.034 -14.703 2.273 14.878 Atomic orbital electron populations 1.70705 1.08101 1.30129 1.39592 1.28056 0.96002 1.05923 0.91930 0.82738 0.74317 0.69741 0.78114 1.19744 1.18716 1.19626 1.20339 1.01199 0.87018 1.49836 0.90428 1.42398 1.39493 1.07126 1.28345 1.21656 0.81633 0.92542 0.79960 1.90669 1.56896 1.42011 1.50201 1.22521 0.99752 0.86591 0.95604 1.48013 1.45591 1.06724 1.35717 1.22013 0.98540 0.74173 0.98244 1.22787 0.95586 0.98406 1.00942 1.22393 1.00304 0.97932 0.93948 1.22276 0.96437 0.98939 0.98260 1.22553 0.99764 0.99982 0.94925 1.16559 0.82131 0.81790 0.82304 1.90738 1.41539 1.83028 1.31732 0.93454 0.84617 0.83532 0.83939 0.94536 0.88705 0.87990 0.91743 0.89562 0.95003 0.87768 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -53.04 12.16 21.65 0.26 -52.78 16 2 C -0.01 -0.72 4.66 84.92 0.40 -0.32 16 3 Si 1.13 51.43 29.99 68.60 2.06 53.49 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.46 -27.75 9.38 83.96 0.79 -26.96 16 8 H 0.08 4.82 7.95 -2.91 -0.02 4.80 16 9 N -0.44 -24.21 2.52 -598.60 -1.51 -25.72 16 10 C 0.45 22.30 6.94 87.94 0.61 22.91 16 11 O -0.52 -29.46 15.52 -2.89 -0.04 -29.51 16 12 C 0.08 2.63 7.65 85.76 0.66 3.29 16 13 N -0.62 -22.06 2.87 -813.71 -2.34 -24.40 16 14 C 0.17 4.34 3.65 45.72 0.17 4.51 16 15 C -0.14 -3.52 6.33 31.67 0.20 -3.32 16 16 C -0.11 -2.24 6.91 31.88 0.22 -2.02 16 17 C -0.12 -3.08 6.83 31.67 0.22 -2.86 16 18 C -0.13 -3.52 6.13 31.32 0.19 -3.33 16 19 C 0.67 32.85 7.20 179.44 1.29 34.15 16 20 O -0.59 -32.35 15.83 -3.79 -0.06 -32.41 16 21 H 0.26 16.24 7.05 -92.71 -0.65 15.59 16 22 H 0.14 3.58 8.14 -2.38 -0.02 3.56 16 23 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 24 H 0.14 2.26 8.13 -2.39 -0.02 2.24 16 25 H 0.04 1.29 6.57 -2.39 -0.02 1.27 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.03 1.03 7.46 -2.39 -0.02 1.02 16 Total: -1.00 -80.96 268.20 4.34 -76.62 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.24 Total: 8.66 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 4.74 Total: 26.05 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -3.59 Total: -102.90 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.10 Total: -61.92 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.06 Total: 53.49 kcal Total: -80.96 4.34 -76.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113006905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.866 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds