Wall clock time and date at job start Sun Mar 29 2020 22:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 C 1.50706 * 109.46964 * 119.99964 * 2 1 3 5 5 C 1.35282 * 126.65163 * 120.00073 * 4 2 1 6 6 C 1.42329 * 103.92210 * 180.02562 * 5 4 2 7 7 C 1.48168 * 126.94778 * 180.02562 * 6 5 4 8 8 O 1.21545 * 120.00255 * 353.75373 * 7 6 5 9 9 N 1.34777 * 120.00160 * 173.76366 * 7 6 5 10 10 C 1.46503 * 120.00038 * 3.80948 * 9 7 6 11 11 C 1.36779 * 120.00128 * 183.81516 * 9 7 6 12 12 H 1.08004 * 120.00334 * 33.53074 * 11 9 7 13 13 C 1.39120 * 119.99799 * 213.53602 * 11 9 7 14 14 N 1.31311 * 120.00220 * 5.69979 * 13 11 9 15 15 Si 1.86801 * 119.99830 * 185.69760 * 13 11 9 16 16 H 1.48497 * 109.47071 * 59.99969 * 15 13 11 17 17 H 1.48502 * 109.47124 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47308 * 300.00145 * 15 13 11 19 19 N 1.31073 * 106.10562 * 359.97438 * 6 5 4 20 20 O 1.20904 * 111.41195 * 359.70315 * 19 6 5 21 21 H 1.09002 * 109.46965 * 59.99866 * 1 2 3 22 22 H 1.08999 * 109.46954 * 300.00003 * 1 2 3 23 23 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47205 * 239.99540 * 2 1 3 25 25 H 1.08999 * 109.47094 * 60.00083 * 3 2 1 26 26 H 1.09002 * 109.47428 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47196 * 299.99993 * 3 2 1 28 28 H 1.08001 * 128.03957 * 359.95915 * 5 4 2 29 29 H 1.08996 * 109.47106 * 84.46036 * 10 9 7 30 30 H 1.09002 * 109.47247 * 204.46630 * 10 9 7 31 31 H 1.09006 * 109.46909 * 324.46330 * 10 9 7 32 32 H 0.97003 * 120.00508 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8131 -1.8147 1.2633 6 6 2.9909 -2.0673 2.6527 7 6 3.7701 -3.1687 3.2651 8 8 4.2465 -4.0394 2.5635 9 7 3.9504 -3.2054 4.6002 10 6 3.3069 -2.2038 5.4541 11 6 4.7343 -4.1776 5.1581 12 1 5.5948 -4.5508 4.6226 13 6 4.4231 -4.6858 6.4152 14 7 3.3170 -4.3150 7.0179 15 14 5.5788 -5.8957 7.2458 16 1 6.9079 -5.2609 7.4344 17 1 5.0237 -6.2828 8.5676 18 1 5.7240 -7.1048 6.3959 19 7 2.3270 -1.1278 3.2809 20 8 1.7972 -0.3673 2.5046 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 3.2087 -2.3751 0.4291 29 1 2.2883 -2.5191 5.6797 30 1 3.8697 -2.1017 6.3820 31 1 3.2841 -1.2451 4.9357 32 1 3.1001 -4.6690 7.8946 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154658533.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:28 Heat of formation + Delta-G solvation = 8.993368 kcal Electronic energy + Delta-G solvation = -16904.939180 eV Core-core repulsion = 14061.586288 eV Total energy + Delta-G solvation = -2843.352892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.04274 -40.38110 -37.03693 -36.78141 -34.94558 -33.70094 -31.63535 -28.44937 -27.97133 -27.26271 -25.10533 -24.04485 -22.83550 -20.28224 -19.05613 -18.76576 -18.20054 -17.68695 -16.87832 -16.12991 -15.93141 -15.79145 -15.19809 -14.56432 -14.43229 -14.06905 -13.90254 -13.57822 -13.30020 -12.96531 -12.83231 -12.75011 -12.42553 -12.16567 -12.13259 -12.08495 -11.68935 -11.34750 -11.10051 -10.88009 -10.38303 -9.79114 -8.47874 -6.22908 0.23493 0.76825 1.37089 1.42431 1.50039 2.07469 2.19505 2.27779 2.67445 2.99830 3.17664 3.55792 3.94793 4.10551 4.16534 4.20548 4.41672 4.59353 4.70083 4.87850 4.88557 4.95314 5.02417 5.03333 5.17586 5.19845 5.29526 5.42709 5.44325 5.96563 6.29082 6.93264 7.13757 7.22587 7.77433 8.56196 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.059357 B = 0.005589 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.611040 B = 5008.770340 C = 5238.847300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.008 4.008 3 C -0.148 4.148 4 C -0.013 4.013 5 C -0.201 4.201 6 C -0.030 4.030 7 C 0.497 3.503 8 O -0.615 6.615 9 N -0.432 5.432 10 C 0.122 3.878 11 C -0.354 4.354 12 H 0.080 0.920 13 C 0.002 3.998 14 N -0.892 5.892 15 Si 1.004 2.996 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.272 1.272 19 N -0.353 5.353 20 O 0.120 5.880 21 H 0.096 0.904 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.124 0.876 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.186 0.814 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 11.490 -10.799 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 C -0.205 4.205 4 C -0.077 4.077 5 C -0.224 4.224 6 C -0.187 4.187 7 C 0.286 3.714 8 O -0.502 6.502 9 N -0.149 5.149 10 C -0.021 4.021 11 C -0.482 4.482 12 H 0.097 0.903 13 C -0.202 4.202 14 N -0.528 5.528 15 Si 0.825 3.175 16 H -0.184 1.184 17 H -0.190 1.190 18 H -0.197 1.197 19 N -0.057 5.057 20 O 0.047 5.953 21 H 0.114 0.886 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.141 0.859 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.203 0.797 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.366 11.296 -9.576 15.751 hybrid contribution 0.726 -1.238 0.122 1.440 sum -4.641 10.059 -9.454 14.563 Atomic orbital electron populations 1.21909 0.92106 1.02628 1.03984 1.20084 0.97447 0.96558 0.88584 1.21904 1.01354 0.93307 1.03981 1.25150 0.98605 0.96219 0.87683 1.22579 1.04322 1.00043 0.95465 1.23643 1.02863 0.97966 0.94259 1.17493 0.84760 0.85844 0.83328 1.90543 1.55932 1.41402 1.62288 1.43656 1.41227 1.25644 1.04419 1.21635 0.96931 0.89519 0.93988 1.19700 1.08233 1.17960 1.02299 0.90253 1.26484 0.97881 0.98651 0.97196 1.69990 1.23496 1.43342 1.15977 0.84866 0.77944 0.77556 0.77165 1.18387 1.19036 1.19722 1.74390 1.11123 1.03623 1.16514 1.84707 1.54225 1.42128 1.14278 0.88561 0.92292 0.92897 0.85850 0.92257 0.92685 0.88629 0.79710 0.94215 0.92379 0.91084 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.18 71.98 0.66 -1.41 16 2 C -0.01 -0.12 3.34 -11.54 -0.04 -0.16 16 3 C -0.15 -1.98 9.18 71.98 0.66 -1.31 16 4 C -0.01 -0.36 5.98 25.01 0.15 -0.21 16 5 C -0.20 -7.10 10.91 22.61 0.25 -6.86 16 6 C -0.03 -1.39 6.87 42.91 0.29 -1.09 16 7 C 0.50 28.10 7.65 86.88 0.66 28.77 16 8 O -0.61 -37.96 16.80 -3.86 -0.06 -38.02 16 9 N -0.43 -25.09 2.97 -661.85 -1.97 -27.06 16 10 C 0.12 6.34 7.96 127.77 1.02 7.35 16 11 C -0.35 -21.25 9.01 84.13 0.76 -20.50 16 12 H 0.08 4.90 7.65 -2.91 -0.02 4.88 16 13 C 0.00 0.09 5.16 84.98 0.44 0.52 16 14 N -0.89 -49.93 11.07 21.69 0.24 -49.69 16 15 Si 1.00 43.16 29.56 68.60 2.03 45.19 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 N -0.35 -14.68 8.69 -49.49 -0.43 -15.11 16 20 O 0.12 3.97 11.18 71.80 0.80 4.77 16 21 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.12 1.55 8.12 -2.39 -0.02 1.53 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.19 5.86 8.06 -2.91 -0.02 5.83 16 29 H 0.04 2.14 7.77 -2.39 -0.02 2.12 16 30 H 0.06 3.04 7.17 -2.39 -0.02 3.02 16 31 H 0.07 3.35 5.32 -2.38 -0.01 3.34 16 32 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -73.08 278.07 6.58 -66.50 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.12 Total: 8.33 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 4.85 Total: 5.11 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -2.16 Total: -91.86 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: 0.74 Total: -33.26 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.08 6.58 -66.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154658533.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.490 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds