Wall clock time and date at job start Sun Mar 29 2020 23:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47274 * 2 1 4 4 N 1.46503 * 109.47361 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99664 * 264.48749 * 4 3 2 6 6 H 1.08008 * 119.99643 * 138.94879 * 5 4 3 7 7 C 1.38947 * 120.00631 * 318.94934 * 5 4 3 8 8 N 1.31409 * 119.99534 * 341.77539 * 7 5 4 9 9 Si 1.86791 * 120.00321 * 161.77766 * 7 5 4 10 10 H 1.48498 * 109.47315 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.47508 * 210.00221 * 9 7 5 12 12 H 1.48503 * 109.47349 * 330.00151 * 9 7 5 13 13 C 1.34774 * 119.99664 * 84.76527 * 4 3 2 14 14 O 1.21295 * 119.99945 * 179.72832 * 13 4 3 15 15 C 1.50701 * 120.00326 * 359.72487 * 13 4 3 16 16 C 1.50702 * 109.47148 * 180.02562 * 15 13 4 17 17 C 1.41377 * 126.80296 * 124.70939 * 16 15 13 18 18 C 1.35452 * 103.98720 * 179.88569 * 17 16 15 19 19 O 1.34038 * 106.44183 * 0.37086 * 18 17 16 20 20 N 1.20925 * 111.57120 * 359.74796 * 19 18 17 21 21 H 1.08999 * 109.47377 * 300.00344 * 1 2 3 22 22 H 1.09003 * 109.46997 * 60.00446 * 1 2 3 23 23 H 1.08993 * 109.47080 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47377 * 239.99656 * 2 1 3 25 25 H 1.09003 * 109.46997 * 119.99554 * 2 1 3 26 26 H 1.08999 * 109.47199 * 59.99548 * 3 2 1 27 27 H 1.09003 * 109.46744 * 299.99709 * 3 2 1 28 28 H 0.97006 * 119.99894 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46803 * 300.00084 * 15 13 4 30 30 H 1.08991 * 109.47256 * 59.99730 * 15 13 4 31 31 H 1.08005 * 128.00863 * 0.02562 * 17 16 15 32 32 H 1.08000 * 126.77827 * 180.09211 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.5568 1.1827 6 1 5.0708 0.9564 1.3566 7 6 3.7511 2.4449 2.1570 8 7 2.9252 3.4156 1.8371 9 14 4.3349 2.2589 3.9216 10 1 5.5786 3.0463 4.1171 11 1 3.2841 2.7557 4.8458 12 1 4.6063 0.8266 4.2049 13 6 4.1793 1.3359 -1.1614 14 8 5.3923 1.3409 -1.1614 15 6 3.4264 1.2104 -2.4608 16 6 4.4062 1.1064 -3.6011 17 6 4.4705 0.0803 -4.5716 18 6 5.5062 0.4445 -5.3649 19 8 5.9861 1.5899 -4.8604 20 7 5.3644 1.9407 -3.8843 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 2.6185 4.0355 2.5173 29 1 2.8035 0.3163 -2.4348 30 1 2.7961 2.0883 -2.6018 31 1 3.8386 -0.7910 -4.6611 32 1 5.8756 -0.0859 -6.2301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155271326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:56 Heat of formation + Delta-G solvation = 24.999464 kcal Electronic energy + Delta-G solvation = -17048.910584 eV Core-core repulsion = 14206.251768 eV Total energy + Delta-G solvation = -2842.658816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.52625 -38.59165 -35.34121 -34.07520 -32.76563 -31.34418 -31.16769 -28.85927 -25.79218 -24.38578 -22.76734 -21.39241 -20.90782 -18.87122 -17.30562 -17.18869 -16.78421 -15.81669 -14.90704 -14.87413 -14.32690 -13.91416 -13.74265 -13.14592 -12.79197 -12.70691 -12.24110 -11.81536 -11.59770 -11.40469 -11.23657 -10.96857 -10.84769 -10.60591 -10.33057 -10.25982 -9.97260 -9.71530 -9.23659 -8.89151 -8.35878 -7.38287 -6.29029 -3.97388 1.89240 2.66210 3.19867 3.27797 3.32623 3.62996 3.93231 4.18895 4.61005 4.74909 4.99253 5.12756 5.44031 5.51777 5.60095 5.61819 5.73033 5.75265 5.96238 6.06891 6.11794 6.20167 6.35959 6.41245 6.44998 6.58713 6.90293 7.23739 7.61412 8.32504 8.55102 8.76235 9.23226 9.41875 10.04971 10.76303 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.007480 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.961404 B = 3742.370976 C = 4494.946580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.108 3.892 4 N -0.443 5.443 5 C -0.308 4.308 6 H 0.087 0.913 7 C 0.039 3.961 8 N -0.872 5.872 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.466 3.534 14 O -0.566 6.566 15 C -0.064 4.064 16 C 0.038 3.962 17 C -0.231 4.231 18 C -0.079 4.079 19 O 0.099 5.901 20 N -0.333 5.333 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -6.862 -9.531 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.016 4.016 4 N -0.163 5.163 5 C -0.436 4.436 6 H 0.104 0.896 7 C -0.166 4.166 8 N -0.510 5.510 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.252 3.748 14 O -0.448 6.448 15 C -0.104 4.104 16 C -0.122 4.122 17 C -0.253 4.253 18 C -0.160 4.160 19 O 0.030 5.970 20 N -0.034 5.034 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.185 0.815 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.771 -5.541 -8.844 11.097 hybrid contribution -0.384 -0.853 0.623 1.124 sum -4.154 -6.394 -8.221 11.213 Atomic orbital electron populations 1.21684 0.96301 1.00697 1.01628 1.22005 0.94910 0.99360 1.01731 1.21551 0.82310 0.94203 1.03569 1.43397 1.04350 1.63857 1.04650 1.19342 1.11950 1.21355 0.90911 0.89569 1.25415 0.97074 0.93517 1.00558 1.69931 1.33575 1.13435 1.34022 0.86089 0.78454 0.78844 0.82234 1.20286 1.20822 1.19415 1.20085 0.88139 0.82165 0.84388 1.90562 1.13903 1.53841 1.86511 1.20144 0.95697 1.04149 0.90457 1.23116 0.97437 0.92869 0.98799 1.22669 1.02560 1.02550 0.97501 1.25883 0.97350 0.90742 1.02033 1.84883 1.46721 1.33515 1.31889 1.73928 1.06568 1.22865 1.00065 0.92699 0.93132 0.93433 0.93206 0.91613 0.87721 0.93439 0.92307 0.88323 0.88316 0.81537 0.77286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.14 -2.46 6.17 -26.73 -0.16 -2.63 16 3 C 0.11 2.31 4.69 -4.04 -0.02 2.29 16 4 N -0.44 -11.38 2.51 -114.81 -0.29 -11.67 16 5 C -0.31 -8.71 8.84 -14.94 -0.13 -8.84 16 6 H 0.09 2.56 7.82 -52.48 -0.41 2.15 16 7 C 0.04 1.04 4.95 -17.47 -0.09 0.96 16 8 N -0.87 -23.97 11.61 55.50 0.64 -23.33 16 9 Si 0.92 21.00 29.59 -169.99 -5.03 15.97 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.47 11.85 7.58 -10.99 -0.08 11.76 16 14 O -0.57 -16.78 15.51 5.54 0.09 -16.70 16 15 C -0.06 -1.23 4.91 -29.03 -0.14 -1.38 16 16 C 0.04 0.72 6.10 -82.10 -0.50 0.21 16 17 C -0.23 -3.29 11.12 -39.38 -0.44 -3.73 16 18 C -0.08 -0.99 12.30 29.74 0.37 -0.62 16 19 O 0.10 1.69 11.20 17.18 0.19 1.88 16 20 N -0.33 -6.99 11.46 33.42 0.38 -6.61 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.81 6.58 -51.93 -0.34 0.46 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.10 2.49 5.76 -51.93 -0.30 2.19 16 27 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.10 1.58 6.52 -51.93 -0.34 1.24 16 30 H 0.10 1.81 7.40 -51.93 -0.38 1.42 16 31 H 0.17 1.78 8.06 -52.48 -0.42 1.35 16 32 H 0.21 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -34.45 277.49 -4.45 -38.90 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.79 Total: 0.98 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.83 Total: -3.62 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.74 Total: -41.61 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.28 Total: -14.82 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.45 -4.45 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155271326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.904 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds