Wall clock time and date at job start Sun Mar 29 2020 21:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86807 * 119.99750 * 2 1 4 4 H 1.48493 * 109.47133 * 264.70408 * 3 2 1 5 5 H 1.48505 * 109.46884 * 24.70115 * 3 2 1 6 6 H 1.48496 * 109.47230 * 144.70243 * 3 2 1 7 7 C 1.40045 * 120.00661 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99480 * 351.55701 * 7 2 1 9 9 C 1.46371 * 120.00469 * 171.54985 * 7 2 1 10 10 O 1.21691 * 119.99727 * 346.06548 * 9 7 2 11 11 N 1.34777 * 119.99865 * 166.06215 * 9 7 2 12 12 C 1.46768 * 119.95339 * 354.67330 * 11 9 7 13 13 C 1.53888 * 109.23846 * 235.36193 * 12 11 9 14 14 N 1.47586 * 106.51975 * 312.78657 * 13 12 11 15 15 C 1.34036 * 127.00782 * 238.84402 * 14 13 12 16 16 O 1.21279 * 125.45065 * 341.59581 * 15 14 13 17 17 C 1.51430 * 109.27531 * 161.62226 * 15 14 13 18 18 C 1.54512 * 104.34570 * 22.95698 * 17 15 14 19 19 C 1.47541 * 121.39406 * 55.26208 * 14 13 12 20 20 H 1.08998 * 111.08463 * 63.56936 * 19 14 13 21 21 C 1.47202 * 119.94679 * 174.69208 * 11 9 7 22 22 H 0.97000 * 120.00122 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.50567 * 355.28994 * 12 11 9 24 24 H 1.09000 * 109.50868 * 115.43399 * 12 11 9 25 25 H 1.09004 * 110.04500 * 72.04285 * 13 12 11 26 26 H 1.09004 * 110.04455 * 193.43856 * 13 12 11 27 27 H 1.09001 * 110.48158 * 264.20384 * 17 15 14 28 28 H 1.08997 * 110.48096 * 141.71258 * 17 15 14 29 29 H 1.08997 * 110.71037 * 97.44137 * 18 17 15 30 30 H 1.09001 * 110.71035 * 220.68401 * 18 17 15 31 31 H 1.09001 * 109.80662 * 4.24329 * 21 11 9 32 32 H 1.08994 * 109.80264 * 243.37032 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.6001 1.9819 -1.3940 5 1 1.3866 2.6825 0.5851 6 1 3.4778 1.4753 0.8090 7 6 2.0072 -1.2127 0.0005 8 1 1.4759 -2.1430 0.1383 9 6 3.4589 -1.2197 -0.1857 10 8 4.0253 -0.2212 -0.5898 11 7 4.1685 -2.3318 0.0904 12 6 3.5034 -3.4959 0.6875 13 6 4.2300 -3.8836 1.9874 14 7 5.6721 -3.8986 1.6736 15 6 6.5132 -4.9352 1.7944 16 8 6.3157 -5.9271 2.4637 17 6 7.7517 -4.6734 0.9633 18 6 7.7956 -3.1360 0.8154 19 6 6.3447 -2.7207 1.0931 20 1 6.3166 -1.8750 1.7801 21 6 5.6094 -2.3769 -0.2071 22 1 -0.4850 0.8400 0.0004 23 1 2.4658 -3.2475 0.9106 24 1 3.5362 -4.3320 -0.0111 25 1 4.0245 -3.1471 2.7643 26 1 3.9074 -4.8717 2.3154 27 1 7.6627 -5.1481 -0.0138 28 1 8.6413 -5.0322 1.4809 29 1 8.4696 -2.6970 1.5510 30 1 8.0903 -2.8542 -0.1955 31 1 5.9415 -1.4054 -0.5732 32 1 5.8079 -3.1425 -0.9570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168523479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:31 Heat of formation + Delta-G solvation = -66.713844 kcal Electronic energy + Delta-G solvation = -17464.507611 eV Core-core repulsion = 14617.871808 eV Total energy + Delta-G solvation = -2846.635803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61520 -38.24705 -36.55586 -34.56222 -32.97194 -32.42905 -29.76142 -27.94222 -26.69538 -24.02809 -22.97121 -21.12401 -20.05374 -18.75059 -16.91274 -16.28221 -16.01514 -15.91755 -15.28685 -15.02024 -14.35353 -14.23528 -13.76693 -13.37186 -13.08590 -12.55034 -12.44651 -12.32993 -12.01506 -11.93247 -11.35878 -11.23903 -10.99282 -10.92098 -10.79446 -10.46557 -9.72869 -9.51261 -9.10752 -8.76273 -8.03408 -7.59039 -6.70578 -4.94180 2.63994 3.08467 3.38798 3.43499 3.65826 3.99363 4.11552 4.38022 4.44932 4.60563 4.75743 5.01922 5.22780 5.27133 5.34654 5.42556 5.57154 5.62624 5.70023 5.79322 5.89738 5.94448 6.11691 6.18105 6.32588 6.66959 6.93454 7.32052 7.48897 7.75137 8.18694 8.27106 8.59241 9.00736 9.90448 10.29771 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.042850 B = 0.007386 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.278148 B = 3789.944570 C = 4218.795437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.102 3.898 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.321 1.321 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.552 3.448 10 O -0.615 6.615 11 N -0.633 5.633 12 C 0.106 3.894 13 C 0.111 3.889 14 N -0.614 5.614 15 C 0.520 3.480 16 O -0.542 6.542 17 C -0.154 4.154 18 C -0.124 4.124 19 C 0.113 3.887 20 H 0.088 0.912 21 C 0.111 3.889 22 H 0.283 0.717 23 H 0.113 0.887 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.429 -5.793 1.718 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.117 4.117 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.253 1.253 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.362 3.638 10 O -0.507 6.507 11 N -0.367 5.367 12 C -0.019 4.019 13 C -0.011 4.011 14 N -0.349 5.349 15 C 0.308 3.692 16 O -0.420 6.420 17 C -0.194 4.194 18 C -0.162 4.162 19 C 0.008 3.992 20 H 0.106 0.894 21 C -0.013 4.013 22 H 0.093 0.907 23 H 0.131 0.869 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.311 -5.798 1.905 12.853 hybrid contribution 0.174 0.581 -0.035 0.607 sum 11.485 -5.217 1.870 12.753 Atomic orbital electron populations 1.69553 1.07957 1.30151 1.37768 1.25779 0.94752 1.02102 0.89054 0.85209 0.77667 0.77342 0.79754 1.20416 1.25252 1.19032 1.20772 0.88806 0.95807 1.51519 0.89082 1.18386 0.88317 0.80209 0.76916 1.90201 1.72368 1.33118 1.55018 1.47652 1.06891 1.15606 1.66565 1.21972 0.98780 0.88504 0.92599 1.22355 0.77734 1.02634 0.98352 1.48690 1.09770 1.13250 1.63156 1.20760 0.85647 0.82095 0.80702 1.90693 1.79104 1.30690 1.41534 1.22358 0.97942 0.97483 1.01660 1.22308 0.95402 0.94548 1.03937 1.22215 0.91596 0.88653 0.96741 0.89383 1.21738 0.82721 1.02729 0.94135 0.90670 0.86874 0.93036 0.90578 0.89043 0.87921 0.88475 0.89860 0.88957 0.88271 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.73 13.92 55.55 0.77 -21.95 16 2 C 0.10 2.80 5.52 -17.37 -0.10 2.70 16 3 Si 0.97 24.70 25.86 -169.99 -4.40 20.30 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.32 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.26 -7.04 6.64 56.52 0.38 -6.66 16 7 C -0.53 -14.35 9.15 -35.63 -0.33 -14.67 16 8 H 0.09 2.42 6.21 -52.48 -0.33 2.09 16 9 C 0.55 13.93 7.28 -12.99 -0.09 13.84 16 10 O -0.61 -16.91 11.72 5.20 0.06 -16.85 16 11 N -0.63 -12.84 2.93 -173.85 -0.51 -13.35 16 12 C 0.11 1.84 6.43 -3.43 -0.02 1.82 16 13 C 0.11 1.72 7.10 -2.98 -0.02 1.70 16 14 N -0.61 -9.27 2.92 -163.39 -0.48 -9.74 16 15 C 0.52 7.84 8.05 -10.96 -0.09 7.75 16 16 O -0.54 -10.08 17.78 5.56 0.10 -9.98 16 17 C -0.15 -1.62 6.90 -26.73 -0.18 -1.81 16 18 C -0.12 -1.21 6.68 -25.70 -0.17 -1.38 16 19 C 0.11 1.56 3.78 -66.98 -0.25 1.31 16 20 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 21 C 0.11 1.84 5.85 -3.52 -0.02 1.82 16 22 H 0.28 7.19 8.29 -40.82 -0.34 6.85 16 23 H 0.11 2.10 5.40 -51.93 -0.28 1.82 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.09 1.32 7.95 -51.93 -0.41 0.91 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.76 7.81 -51.93 -0.41 0.35 16 31 H 0.10 1.76 6.95 -51.93 -0.36 1.40 16 32 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 LS Contribution 262.31 15.07 3.95 3.95 Total: -1.00 -32.70 262.31 -5.68 -38.37 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -3.90 Total: -3.83 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -1.28 Total: 13.08 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.21 Total: -45.05 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: 0.16 Total: -26.83 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.40 Total: 20.30 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.70 -5.68 -38.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168523479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.340 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds