Wall clock time and date at job start Sun Mar 29 2020 21:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86807 * 119.99750 * 2 1 4 4 H 1.48493 * 109.47133 * 264.70408 * 3 2 1 5 5 H 1.48505 * 109.46884 * 24.70115 * 3 2 1 6 6 H 1.48496 * 109.47230 * 144.70243 * 3 2 1 7 7 C 1.40045 * 120.00661 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99480 * 351.55701 * 7 2 1 9 9 C 1.46371 * 120.00469 * 171.54985 * 7 2 1 10 10 O 1.21691 * 119.99727 * 346.06548 * 9 7 2 11 11 N 1.34777 * 119.99865 * 166.06215 * 9 7 2 12 12 C 1.46768 * 119.95339 * 354.67330 * 11 9 7 13 13 C 1.53888 * 109.23846 * 235.36193 * 12 11 9 14 14 N 1.47586 * 106.51975 * 312.78657 * 13 12 11 15 15 C 1.34036 * 127.00782 * 238.84402 * 14 13 12 16 16 O 1.21279 * 125.45065 * 341.59581 * 15 14 13 17 17 C 1.51430 * 109.27531 * 161.62226 * 15 14 13 18 18 C 1.54512 * 104.34570 * 22.95698 * 17 15 14 19 19 C 1.47541 * 121.39406 * 55.26208 * 14 13 12 20 20 H 1.08998 * 111.08463 * 63.56936 * 19 14 13 21 21 C 1.47202 * 119.94679 * 174.69208 * 11 9 7 22 22 H 0.97000 * 120.00122 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.50567 * 355.28994 * 12 11 9 24 24 H 1.09000 * 109.50868 * 115.43399 * 12 11 9 25 25 H 1.09004 * 110.04500 * 72.04285 * 13 12 11 26 26 H 1.09004 * 110.04455 * 193.43856 * 13 12 11 27 27 H 1.09001 * 110.48158 * 264.20384 * 17 15 14 28 28 H 1.08997 * 110.48096 * 141.71258 * 17 15 14 29 29 H 1.08997 * 110.71037 * 97.44137 * 18 17 15 30 30 H 1.09001 * 110.71035 * 220.68401 * 18 17 15 31 31 H 1.09001 * 109.80662 * 4.24329 * 21 11 9 32 32 H 1.08994 * 109.80264 * 243.37032 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.6001 1.9819 -1.3940 5 1 1.3866 2.6825 0.5851 6 1 3.4778 1.4753 0.8090 7 6 2.0072 -1.2127 0.0005 8 1 1.4759 -2.1430 0.1383 9 6 3.4589 -1.2197 -0.1857 10 8 4.0253 -0.2212 -0.5898 11 7 4.1685 -2.3318 0.0904 12 6 3.5034 -3.4959 0.6875 13 6 4.2300 -3.8836 1.9874 14 7 5.6721 -3.8986 1.6736 15 6 6.5132 -4.9352 1.7944 16 8 6.3157 -5.9271 2.4637 17 6 7.7517 -4.6734 0.9633 18 6 7.7956 -3.1360 0.8154 19 6 6.3447 -2.7207 1.0931 20 1 6.3166 -1.8750 1.7801 21 6 5.6094 -2.3769 -0.2071 22 1 -0.4850 0.8400 0.0004 23 1 2.4658 -3.2475 0.9106 24 1 3.5362 -4.3320 -0.0111 25 1 4.0245 -3.1471 2.7643 26 1 3.9074 -4.8717 2.3154 27 1 7.6627 -5.1481 -0.0138 28 1 8.6413 -5.0322 1.4809 29 1 8.4696 -2.6970 1.5510 30 1 8.0903 -2.8542 -0.1955 31 1 5.9415 -1.4054 -0.5732 32 1 5.8079 -3.1425 -0.9570 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168523479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:31 Heat of formation + Delta-G solvation = -90.103345 kcal Electronic energy + Delta-G solvation = -17465.521856 eV Core-core repulsion = 14617.871808 eV Total energy + Delta-G solvation = -2847.650048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82386 -39.95451 -38.00223 -35.99188 -35.02966 -33.77292 -31.01390 -29.36480 -28.43266 -25.34825 -24.34712 -22.21153 -21.64835 -20.18952 -18.65230 -18.04108 -17.32535 -17.16022 -16.85941 -16.40268 -15.87951 -15.84456 -15.08511 -14.65110 -14.52491 -14.22576 -14.09696 -13.82100 -13.47847 -13.17344 -13.00716 -12.72765 -12.50127 -12.36253 -12.07435 -11.81894 -11.54485 -11.22668 -10.85676 -10.15315 -10.03151 -9.16550 -8.80267 -7.03131 1.32279 1.38045 1.49571 1.59723 1.90485 2.07114 2.32619 2.62707 3.27551 3.39082 3.62134 3.76274 3.97735 4.10755 4.19244 4.23651 4.34185 4.51180 4.62018 4.67713 4.82615 4.88627 4.97723 5.06655 5.12681 5.15448 5.46352 5.65227 5.91330 6.13830 6.23242 6.58582 7.05333 7.10768 7.93299 8.24824 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.042850 B = 0.007386 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.278148 B = 3789.944570 C = 4218.795437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.070 3.930 3 Si 1.012 2.988 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.283 1.283 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.551 3.449 10 O -0.640 6.640 11 N -0.633 5.633 12 C 0.108 3.892 13 C 0.117 3.883 14 N -0.620 5.620 15 C 0.512 3.488 16 O -0.583 6.583 17 C -0.142 4.142 18 C -0.109 4.109 19 C 0.116 3.884 20 H 0.077 0.923 21 C 0.108 3.892 22 H 0.292 0.708 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.539 -6.314 1.538 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.146 4.146 3 Si 0.844 3.156 4 H -0.219 1.219 5 H -0.231 1.231 6 H -0.210 1.210 7 C -0.589 4.589 8 H 0.103 0.897 9 C 0.359 3.641 10 O -0.534 6.534 11 N -0.366 5.366 12 C -0.016 4.016 13 C -0.006 4.006 14 N -0.354 5.354 15 C 0.302 3.698 16 O -0.464 6.464 17 C -0.182 4.182 18 C -0.147 4.147 19 C 0.011 3.989 20 H 0.095 0.905 21 C -0.015 4.015 22 H 0.102 0.898 23 H 0.114 0.886 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.430 -6.335 1.734 14.950 hybrid contribution -0.465 0.660 0.017 0.807 sum 12.964 -5.676 1.751 14.260 Atomic orbital electron populations 1.69562 1.08377 1.31144 1.38813 1.26268 0.95275 1.03855 0.89241 0.84580 0.76371 0.76145 0.78463 1.21869 1.23120 1.20979 1.21014 0.90159 0.95686 1.52000 0.89676 1.18250 0.88105 0.81191 0.76554 1.90173 1.72787 1.34458 1.56028 1.47615 1.08635 1.14874 1.65469 1.22004 0.98030 0.87737 0.93782 1.22199 0.78529 1.02938 0.96939 1.48835 1.09489 1.13986 1.63043 1.21592 0.86844 0.81086 0.80235 1.90674 1.80222 1.32158 1.43313 1.22403 0.96073 0.98024 1.01693 1.22360 0.92418 0.93879 1.06093 1.22245 0.93856 0.88049 0.94735 0.90461 1.21999 0.80339 1.02906 0.96287 0.89781 0.88564 0.91579 0.91118 0.88050 0.86046 0.86358 0.87787 0.86553 0.89530 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.95 13.92 21.84 0.30 -46.65 16 2 C 0.07 3.86 5.52 85.30 0.47 4.33 16 3 Si 1.01 51.08 25.86 68.60 1.77 52.86 16 4 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -15.01 6.64 99.48 0.66 -14.35 16 7 C -0.55 -30.11 9.15 24.83 0.23 -29.88 16 8 H 0.09 4.63 6.21 -2.91 -0.02 4.61 16 9 C 0.55 27.89 7.28 86.36 0.63 28.52 16 10 O -0.64 -35.22 11.72 -4.32 -0.05 -35.27 16 11 N -0.63 -25.21 2.93 -822.17 -2.41 -27.62 16 12 C 0.11 3.70 6.43 86.63 0.56 4.26 16 13 C 0.12 3.50 7.10 86.47 0.61 4.11 16 14 N -0.62 -17.43 2.92 -789.65 -2.31 -19.74 16 15 C 0.51 14.13 8.05 88.01 0.71 14.84 16 16 O -0.58 -20.76 17.78 -3.03 -0.05 -20.81 16 17 C -0.14 -2.37 6.90 30.59 0.21 -2.16 16 18 C -0.11 -1.65 6.68 31.26 0.21 -1.44 16 19 C 0.12 2.90 3.78 45.04 0.17 3.07 16 20 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 21 C 0.11 3.34 5.85 86.34 0.50 3.85 16 22 H 0.29 14.78 8.29 -92.71 -0.77 14.01 16 23 H 0.10 3.63 5.40 -2.39 -0.01 3.61 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.10 2.85 7.95 -2.39 -0.02 2.83 16 27 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.12 1.29 7.81 -2.39 -0.02 1.27 16 31 H 0.09 2.94 6.95 -2.39 -0.02 2.92 16 32 H 0.08 2.06 8.11 -2.39 -0.02 2.04 16 Total: -1.00 -70.52 262.31 2.64 -67.88 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: 1.08 Total: -0.14 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 4.30 Total: 29.49 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -4.41 Total: -94.01 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -0.10 Total: -56.08 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 1.77 Total: 52.86 kcal Total: -70.52 2.64 -67.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168523479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.223 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds