Wall clock time and date at job start Sun Mar 29 2020 22:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34262 * 126.52212 * 2 1 4 4 C 1.34052 * 108.22466 * 179.97438 * 3 2 1 5 5 N 1.29934 * 109.24178 * 359.74267 * 4 3 2 6 6 C 1.36065 * 108.48033 * 0.41035 * 5 4 3 7 7 C 1.47416 * 126.45155 * 179.86054 * 6 5 4 8 8 O 1.21615 * 120.00188 * 179.68539 * 7 6 5 9 9 N 1.34777 * 119.99966 * 359.68863 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46861 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00200 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00031 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47227 * 90.00066 * 17 15 13 19 19 H 1.48500 * 109.46628 * 209.99752 * 17 15 13 20 20 H 1.48493 * 109.47109 * 329.99411 * 17 15 13 21 21 H 1.08997 * 109.46656 * 270.04470 * 1 2 3 22 22 H 1.08998 * 109.46680 * 30.04043 * 1 2 3 23 23 H 1.08998 * 109.46786 * 150.04210 * 1 2 3 24 24 H 1.07998 * 125.37688 * 180.02562 * 4 3 2 25 25 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 26 26 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 27 27 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 28 28 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 29 29 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 30 30 H 1.08992 * 109.47534 * 299.99582 * 12 11 10 31 31 H 1.08996 * 109.47134 * 60.00388 * 12 11 10 32 32 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0790 0.0000 4 6 3.5788 0.6581 0.0006 5 7 3.6003 -0.6410 0.0064 6 6 2.3171 -1.0936 0.0006 7 6 1.8854 -2.5031 0.0013 8 8 0.7003 -2.7762 0.0014 9 7 2.8042 -3.4892 0.0019 10 6 2.3752 -4.8901 0.0020 11 6 3.6051 -5.8001 0.0021 12 6 3.1571 -7.2630 0.0029 13 6 4.3686 -8.1593 0.0023 14 1 5.3590 -7.7286 0.0011 15 6 4.2126 -9.5293 0.0023 16 7 3.0066 -10.0538 0.0033 17 14 5.7144 -10.6403 0.0024 18 1 6.1123 -10.9347 1.4025 19 1 5.3910 -11.9094 -0.6976 20 1 6.8333 -9.9600 -0.6977 21 1 -0.3632 0.0008 1.0277 22 1 -0.3632 0.8896 -0.5145 23 1 -0.3633 -0.8904 -0.5132 24 1 4.4489 1.2979 0.0011 25 1 3.7494 -3.2715 0.0015 26 1 1.7771 -5.0868 0.8919 27 1 1.7778 -5.0872 -0.8881 28 1 4.2028 -5.6032 -0.8880 29 1 4.2029 -5.6030 0.8921 30 1 2.5598 -7.4596 0.8931 31 1 2.5593 -7.4604 -0.8869 32 1 2.8968 -11.0175 0.0037 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171498436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:45 Heat of formation + Delta-G solvation = -34.793083 kcal Electronic energy + Delta-G solvation = -15953.160138 eV Core-core repulsion = 13107.908523 eV Total energy + Delta-G solvation = -2845.251615 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.62798 -39.31562 -35.46301 -35.02789 -33.27810 -32.55773 -31.18282 -27.93492 -26.55049 -24.19510 -22.91205 -21.78699 -20.72633 -20.12033 -18.11124 -17.10153 -16.42672 -16.19768 -15.56410 -15.21261 -14.81319 -14.41867 -14.05048 -13.82268 -13.37088 -13.23447 -12.63798 -12.26626 -11.82075 -11.81510 -11.47688 -10.99807 -10.88772 -10.70989 -10.58756 -10.09425 -9.84385 -9.40633 -9.16858 -9.10587 -8.72349 -8.35401 -6.00210 -4.03014 0.93892 1.90007 2.35078 3.30013 3.32521 3.34411 3.38778 3.42218 3.89217 4.44181 4.46122 4.77345 4.96390 5.21581 5.25341 5.35670 5.62104 5.71014 5.79094 5.81822 5.92083 6.17747 6.48097 6.62000 6.84079 7.01769 7.21897 7.65440 7.74150 7.78026 7.98745 8.30899 8.40649 9.03607 9.61068 11.11145 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.055731 B = 0.003803 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.293024 B = 7360.911329 C = 7832.152446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.039 3.961 3 O -0.203 6.203 4 C 0.171 3.829 5 N -0.462 5.462 6 C -0.075 4.075 7 C 0.595 3.405 8 O -0.540 6.540 9 N -0.706 5.706 10 C 0.116 3.884 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.255 0.745 25 H 0.407 0.593 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 22.448 -0.043 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.017 4.017 3 O -0.089 6.089 4 C -0.058 4.058 5 N -0.191 5.191 6 C -0.194 4.194 7 C 0.380 3.620 8 O -0.418 6.418 9 N -0.356 5.356 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.110 0.890 22 H 0.098 0.902 23 H 0.132 0.868 24 H 0.270 0.730 25 H 0.242 0.758 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.827 21.677 -0.041 21.754 hybrid contribution 0.996 -0.079 0.027 1.000 sum -0.831 21.598 -0.014 21.614 Atomic orbital electron populations 1.20607 0.82533 1.05421 1.04726 1.23780 0.95239 0.83317 0.99366 1.84368 1.18609 1.36340 1.69594 1.27999 0.85260 0.91254 1.01238 1.70748 1.21898 1.10158 1.16294 1.21635 0.88716 0.95913 1.13176 1.16740 0.85711 0.82530 0.77042 1.90775 1.16276 1.83265 1.51524 1.46033 1.10033 1.06748 1.72751 1.21731 0.98957 0.77769 1.02188 1.21901 0.95166 0.97796 1.01084 1.19031 0.96915 0.87749 0.97677 1.21216 0.92847 0.91128 1.50839 0.92612 1.25029 0.95830 0.98324 0.95282 1.69968 1.21103 1.11619 1.50651 0.86575 0.83098 0.80123 0.78092 1.20663 1.21219 1.19875 0.88992 0.90224 0.86798 0.72966 0.75796 0.91459 0.91468 0.92611 0.92618 0.96227 0.96223 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.88 36.01 0.36 -0.33 16 2 C 0.04 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.20 -1.99 10.73 6.49 0.07 -1.92 16 4 C 0.17 1.47 13.19 51.96 0.69 2.16 16 5 N -0.46 -5.74 11.06 -11.49 -0.13 -5.87 16 6 C -0.07 -1.04 6.99 -83.02 -0.58 -1.62 16 7 C 0.59 9.72 7.81 -12.52 -0.10 9.62 16 8 O -0.54 -9.85 14.80 5.26 0.08 -9.77 16 9 N -0.71 -11.43 5.55 -61.38 -0.34 -11.77 16 10 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 11 C -0.12 -2.46 5.27 -26.73 -0.14 -2.60 16 12 C 0.02 0.61 4.97 -27.89 -0.14 0.48 16 13 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.11 1.21 6.48 -51.93 -0.34 0.88 16 24 H 0.25 0.77 8.06 -52.49 -0.42 0.35 16 25 H 0.41 6.02 8.20 -40.82 -0.33 5.68 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 286.01 15.07 4.31 4.31 Total: -1.00 -33.36 286.01 -4.92 -38.29 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.02 Total: -0.12 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.61 Total: -3.55 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.27 Total: -43.89 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.15 Total: -11.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.36 -4.92 -38.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171498436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.495 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds