Wall clock time and date at job start Sun Mar 29 2020 22:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34262 * 126.52212 * 2 1 4 4 C 1.34052 * 108.22466 * 179.97438 * 3 2 1 5 5 N 1.29934 * 109.24178 * 359.74267 * 4 3 2 6 6 C 1.36065 * 108.48033 * 0.41035 * 5 4 3 7 7 C 1.47416 * 126.45155 * 179.86054 * 6 5 4 8 8 O 1.21615 * 120.00188 * 179.68539 * 7 6 5 9 9 N 1.34777 * 119.99966 * 359.68863 * 7 6 5 10 10 C 1.46506 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46861 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00200 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00031 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47227 * 90.00066 * 17 15 13 19 19 H 1.48500 * 109.46628 * 209.99752 * 17 15 13 20 20 H 1.48493 * 109.47109 * 329.99411 * 17 15 13 21 21 H 1.08997 * 109.46656 * 270.04470 * 1 2 3 22 22 H 1.08998 * 109.46680 * 30.04043 * 1 2 3 23 23 H 1.08998 * 109.46786 * 150.04210 * 1 2 3 24 24 H 1.07998 * 125.37688 * 180.02562 * 4 3 2 25 25 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 26 26 H 1.09004 * 109.47073 * 299.99562 * 10 9 7 27 27 H 1.09000 * 109.47212 * 59.99645 * 10 9 7 28 28 H 1.09004 * 109.46930 * 299.99770 * 11 10 9 29 29 H 1.09004 * 109.47059 * 59.99372 * 11 10 9 30 30 H 1.08992 * 109.47534 * 299.99582 * 12 11 10 31 31 H 1.08996 * 109.47134 * 60.00388 * 12 11 10 32 32 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0790 0.0000 4 6 3.5788 0.6581 0.0006 5 7 3.6003 -0.6410 0.0064 6 6 2.3171 -1.0936 0.0006 7 6 1.8854 -2.5031 0.0013 8 8 0.7003 -2.7762 0.0014 9 7 2.8042 -3.4892 0.0019 10 6 2.3752 -4.8901 0.0020 11 6 3.6051 -5.8001 0.0021 12 6 3.1571 -7.2630 0.0029 13 6 4.3686 -8.1593 0.0023 14 1 5.3590 -7.7286 0.0011 15 6 4.2126 -9.5293 0.0023 16 7 3.0066 -10.0538 0.0033 17 14 5.7144 -10.6403 0.0024 18 1 6.1123 -10.9347 1.4025 19 1 5.3910 -11.9094 -0.6976 20 1 6.8333 -9.9600 -0.6977 21 1 -0.3632 0.0008 1.0277 22 1 -0.3632 0.8896 -0.5145 23 1 -0.3633 -0.8904 -0.5132 24 1 4.4489 1.2979 0.0011 25 1 3.7494 -3.2715 0.0015 26 1 1.7771 -5.0868 0.8919 27 1 1.7778 -5.0872 -0.8881 28 1 4.2028 -5.6032 -0.8880 29 1 4.2029 -5.6030 0.8921 30 1 2.5598 -7.4596 0.8931 31 1 2.5593 -7.4604 -0.8869 32 1 2.8968 -11.0175 0.0037 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171498436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:44 Heat of formation + Delta-G solvation = -60.751241 kcal Electronic energy + Delta-G solvation = -15954.285768 eV Core-core repulsion = 13107.908523 eV Total energy + Delta-G solvation = -2846.377246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.44363 -40.61143 -37.04805 -35.91609 -35.18355 -33.37994 -33.01988 -29.23716 -27.96796 -25.59290 -24.26920 -22.79024 -22.32606 -21.39503 -19.19549 -18.50725 -17.93155 -17.24263 -16.83757 -16.66804 -16.44553 -15.61945 -15.36049 -15.16011 -14.47067 -14.19388 -13.95785 -13.76561 -13.55891 -13.35899 -12.76232 -12.57576 -12.43586 -12.39364 -11.86480 -11.70344 -11.64045 -11.28570 -11.07619 -10.55409 -10.27714 -9.87956 -8.19723 -6.31137 0.02963 1.05017 1.41731 1.43204 1.54241 1.57067 2.11145 2.19540 2.42623 3.10782 3.13963 3.62713 3.77860 4.12843 4.17950 4.24085 4.41128 4.52585 4.58094 4.86610 4.91241 4.91345 5.11247 5.13856 5.18996 5.36471 5.50874 5.69401 5.83384 6.21474 6.29130 6.59032 6.85617 7.05485 7.38269 8.92421 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.055731 B = 0.003803 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.293024 B = 7360.911329 C = 7832.152446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.048 3.952 3 O -0.197 6.197 4 C 0.198 3.802 5 N -0.498 5.498 6 C -0.109 4.109 7 C 0.592 3.408 8 O -0.567 6.567 9 N -0.703 5.703 10 C 0.130 3.870 11 C -0.103 4.103 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.261 1.261 21 H 0.103 0.897 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.307 0.693 25 H 0.415 0.585 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.065 0.935 30 H -0.005 1.005 31 H -0.005 1.005 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 24.384 -0.011 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.009 4.009 3 O -0.084 6.084 4 C -0.030 4.030 5 N -0.226 5.226 6 C -0.227 4.227 7 C 0.379 3.621 8 O -0.448 6.448 9 N -0.353 5.353 10 C 0.007 3.993 11 C -0.141 4.141 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.186 1.186 21 H 0.121 0.879 22 H 0.127 0.873 23 H 0.112 0.888 24 H 0.322 0.678 25 H 0.251 0.749 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.123 23.627 -0.008 23.627 hybrid contribution 0.462 -0.571 0.017 0.734 sum 0.339 23.056 0.009 23.059 Atomic orbital electron populations 1.20671 0.81210 1.05847 1.05526 1.24082 0.96125 0.83093 0.97604 1.84420 1.19029 1.35481 1.69462 1.29198 0.85860 0.90688 0.97296 1.70702 1.21268 1.12128 1.18534 1.21317 0.90207 0.94845 1.16342 1.17104 0.85250 0.83670 0.76081 1.90753 1.17306 1.84016 1.52681 1.45848 1.10578 1.05761 1.73102 1.21350 0.97717 0.78955 1.01320 1.21608 0.95899 0.94623 1.01944 1.18933 0.95842 0.91205 0.95307 1.21676 0.93806 0.91987 1.50648 0.91753 1.26012 0.99110 1.00154 0.94698 1.70108 1.23593 1.12123 1.51595 0.85407 0.79150 0.77768 0.78478 1.19784 1.20878 1.18557 0.87898 0.87323 0.88763 0.67831 0.74871 0.92428 0.92431 0.91661 0.91653 0.98657 0.98654 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.88 71.24 0.70 -0.57 16 2 C 0.05 1.04 7.44 25.19 0.19 1.22 16 3 O -0.20 -3.28 10.73 0.31 0.00 -3.28 16 4 C 0.20 2.74 13.19 130.52 1.72 4.46 16 5 N -0.50 -11.45 11.06 -305.16 -3.37 -14.83 16 6 C -0.11 -2.94 6.99 40.41 0.28 -2.66 16 7 C 0.59 19.55 7.81 86.66 0.68 20.23 16 8 O -0.57 -21.23 14.80 -4.08 -0.06 -21.30 16 9 N -0.70 -22.87 5.55 -466.35 -2.59 -25.45 16 10 C 0.13 4.85 5.67 86.38 0.49 5.34 16 11 C -0.10 -4.19 5.27 30.59 0.16 -4.03 16 12 C 0.02 1.32 4.97 29.85 0.15 1.46 16 13 C -0.54 -30.91 9.11 25.60 0.23 -30.67 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 16 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 17 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.09 2.01 6.48 -2.39 -0.02 1.99 16 24 H 0.31 0.29 8.06 -2.91 -0.02 0.27 16 25 H 0.41 12.10 8.20 -92.71 -0.76 11.34 16 26 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.29 286.01 1.73 -71.56 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.37 Total: 8.96 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.07 Total: -4.87 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -5.68 Total: -97.41 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.57 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -73.29 1.73 -71.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171498436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.811 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds