Wall clock time and date at job start Sun Mar 29 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30431 * 125.98999 * 2 1 4 4 N 1.39928 * 108.91811 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.74487 * 179.97438 * 4 3 2 6 6 C 1.34230 * 108.51253 * 359.72722 * 4 3 2 7 7 C 1.38126 * 107.40713 * 0.42940 * 6 4 3 8 8 C 1.47286 * 126.42766 * 179.83501 * 7 6 4 9 9 O 1.21521 * 120.00041 * 179.68926 * 8 7 6 10 10 O 1.34754 * 119.99967 * 359.68620 * 8 7 6 11 11 C 1.45198 * 117.00242 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47372 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99858 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99533 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00648 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46746 * 60.00121 * 17 15 13 19 19 H 1.48494 * 109.47327 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46893 * 300.00426 * 17 15 13 21 21 H 1.09001 * 109.47121 * 269.97524 * 1 2 3 22 22 H 1.08996 * 109.47667 * 29.97640 * 1 2 3 23 23 H 1.09009 * 109.47176 * 149.97850 * 1 2 3 24 24 H 1.09003 * 109.47294 * 89.97555 * 5 4 3 25 25 H 1.08995 * 109.47428 * 209.97891 * 5 4 3 26 26 H 1.09004 * 109.46692 * 329.97534 * 5 4 3 27 27 H 1.07998 * 126.29531 * 180.26454 * 6 4 3 28 28 H 1.08998 * 109.47176 * 300.00214 * 11 10 8 29 29 H 1.08994 * 109.46872 * 60.00181 * 11 10 8 30 30 H 1.08998 * 109.47020 * 300.00157 * 12 11 10 31 31 H 1.09006 * 109.46668 * 60.00008 * 12 11 10 32 32 H 0.96996 * 120.00279 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6111 0.6446 -0.0006 5 6 4.7782 1.5300 -0.0013 6 6 3.6448 -0.6973 0.0051 7 6 2.3377 -1.1436 -0.0006 8 6 1.8928 -2.5476 -0.0008 9 8 0.7061 -2.8090 -0.0004 10 8 2.8019 -3.5424 -0.0014 11 6 2.2916 -4.9018 -0.0010 12 6 3.4628 -5.8862 -0.0012 13 6 2.9331 -7.2971 -0.0002 14 1 1.8677 -7.4738 0.0002 15 6 3.8087 -8.3621 -0.0007 16 7 5.1061 -8.1468 -0.0016 17 14 3.1521 -10.1110 -0.0001 18 1 2.3220 -10.3284 -1.2120 19 1 4.2888 -11.0665 -0.0002 20 1 2.3236 -10.3282 1.2129 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5134 23 1 -0.3634 -0.8899 -0.5142 24 1 5.0680 1.7501 1.0262 25 1 5.6055 1.0403 -0.5151 26 1 4.5296 2.4583 -0.5156 27 1 4.5311 -1.3145 0.0102 28 1 1.6835 -5.0613 0.8894 29 1 1.6822 -5.0613 -0.8905 30 1 4.0712 -5.7268 -0.8914 31 1 4.0718 -5.7265 0.8886 32 1 5.7221 -8.8961 -0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172186715.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:59 Heat of formation + Delta-G solvation = -24.309343 kcal Electronic energy + Delta-G solvation = -16142.606516 eV Core-core repulsion = 13297.809509 eV Total energy + Delta-G solvation = -2844.797006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45829 -39.34231 -35.93074 -34.06930 -33.31595 -31.03074 -29.98932 -29.46002 -26.27213 -24.91760 -22.78169 -21.12099 -20.46296 -19.59293 -17.51935 -16.69369 -16.07434 -15.96286 -15.44028 -15.35315 -14.49554 -14.27267 -13.70112 -13.37139 -13.02205 -12.85799 -12.55436 -12.32256 -12.26618 -12.03776 -11.17820 -11.04383 -10.95442 -10.69130 -10.67088 -10.08735 -9.57340 -9.55783 -9.45416 -9.28673 -8.75786 -8.42101 -6.08913 -4.12864 1.42065 2.06842 2.18836 3.31623 3.33786 3.35799 3.45066 3.47982 4.21560 4.41885 4.64533 4.78575 4.84950 5.10589 5.14831 5.27794 5.43543 5.60790 5.67826 5.88160 5.95601 6.16875 6.18912 6.45102 6.66686 6.70063 7.10218 7.47680 7.59165 7.65285 7.89675 8.24627 8.41359 8.92593 9.51425 11.02628 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.042007 B = 0.004489 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.403361 B = 6236.186211 C = 6871.537799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.135 3.865 3 N -0.307 5.307 4 N -0.366 5.366 5 C 0.098 3.902 6 C 0.129 3.871 7 C -0.275 4.275 8 C 0.536 3.464 9 O -0.522 6.522 10 O -0.358 6.358 11 C 0.078 3.922 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.195 0.805 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 18.015 -0.066 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 N -0.129 5.129 4 N -0.144 5.144 5 C -0.043 4.043 6 C -0.022 4.022 7 C -0.288 4.288 8 C 0.380 3.620 9 O -0.413 6.413 10 O -0.275 6.275 11 C 0.005 3.995 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.212 0.788 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.880 19.183 -0.071 19.204 hybrid contribution -0.131 -1.926 0.039 1.931 sum -1.011 17.257 -0.033 17.287 Atomic orbital electron populations 1.20371 0.85545 1.04111 1.03668 1.22483 0.97292 0.88486 0.94945 1.77156 0.86027 1.22457 1.27283 1.48311 1.06145 1.04972 1.54950 1.21997 0.83809 0.94599 1.03910 1.23375 0.99657 0.84628 0.94578 1.19520 0.92538 0.91856 1.24915 1.19943 0.84213 0.85125 0.72671 1.90754 1.17959 1.84931 1.47613 1.86550 1.39834 1.17819 1.83271 1.23600 0.99872 0.75065 1.00969 1.19159 0.92170 0.91134 0.98749 1.20961 0.93258 0.90100 1.52085 0.92270 1.24972 0.94785 0.99462 0.94880 1.69960 1.01444 1.31695 1.49903 0.86536 0.78374 0.83611 0.78805 1.20058 1.21162 1.20063 0.90087 0.90982 0.88534 0.90214 0.88823 0.88945 0.78831 0.92332 0.92328 0.95423 0.95426 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.92 36.00 0.36 -0.62 16 2 C 0.14 1.99 7.27 -82.01 -0.60 1.39 16 3 N -0.31 -4.28 12.50 33.90 0.42 -3.86 16 4 N -0.37 -4.20 3.98 -67.58 -0.27 -4.47 16 5 C 0.10 0.60 11.44 59.85 0.68 1.29 16 6 C 0.13 1.63 11.33 -16.54 -0.19 1.44 16 7 C -0.28 -4.35 6.13 -105.08 -0.64 -4.99 16 8 C 0.54 10.14 7.95 34.41 0.27 10.41 16 9 O -0.52 -10.73 14.71 -19.28 -0.28 -11.02 16 10 O -0.36 -7.33 10.05 -40.64 -0.41 -7.73 16 11 C 0.08 1.75 5.41 37.16 0.20 1.95 16 12 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 13 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.10 1.32 6.56 -51.92 -0.34 0.98 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -33.46 288.68 -5.05 -38.51 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.11 Total: -4.46 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.47 Total: -2.12 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.89 Total: -33.90 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.69 Total: -18.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.46 -5.05 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172186715.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.200 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds